Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G28480

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0051553: flavone biosynthetic process0.00E+00
2GO:0001881: receptor recycling0.00E+00
3GO:0072722: response to amitrole0.00E+00
4GO:0006592: ornithine biosynthetic process0.00E+00
5GO:0009312: oligosaccharide biosynthetic process0.00E+00
6GO:0034976: response to endoplasmic reticulum stress2.16E-10
7GO:0045454: cell redox homeostasis1.01E-06
8GO:0046686: response to cadmium ion4.23E-06
9GO:0006457: protein folding4.05E-05
10GO:0006122: mitochondrial electron transport, ubiquinol to cytochrome c1.54E-04
11GO:0010265: SCF complex assembly2.25E-04
12GO:1990022: RNA polymerase III complex localization to nucleus2.25E-04
13GO:0044376: RNA polymerase II complex import to nucleus2.25E-04
14GO:0051775: response to redox state2.25E-04
15GO:0006096: glycolytic process2.46E-04
16GO:0006511: ubiquitin-dependent protein catabolic process2.51E-04
17GO:0006032: chitin catabolic process4.12E-04
18GO:0009627: systemic acquired resistance4.24E-04
19GO:0000272: polysaccharide catabolic process4.76E-04
20GO:0080183: response to photooxidative stress5.00E-04
21GO:0080151: positive regulation of salicylic acid mediated signaling pathway5.00E-04
22GO:0051788: response to misfolded protein5.00E-04
23GO:0002237: response to molecule of bacterial origin6.96E-04
24GO:0045793: positive regulation of cell size8.13E-04
25GO:0009410: response to xenobiotic stimulus8.13E-04
26GO:0010272: response to silver ion8.13E-04
27GO:0046168: glycerol-3-phosphate catabolic process8.13E-04
28GO:0008333: endosome to lysosome transport8.13E-04
29GO:0055074: calcium ion homeostasis8.13E-04
30GO:0006487: protein N-linked glycosylation9.55E-04
31GO:0009651: response to salt stress1.09E-03
32GO:0006168: adenine salvage1.16E-03
33GO:0071786: endoplasmic reticulum tubular network organization1.16E-03
34GO:0006882: cellular zinc ion homeostasis1.16E-03
35GO:0001676: long-chain fatty acid metabolic process1.16E-03
36GO:0046513: ceramide biosynthetic process1.16E-03
37GO:0032877: positive regulation of DNA endoreduplication1.16E-03
38GO:0006166: purine ribonucleoside salvage1.16E-03
39GO:0002239: response to oomycetes1.16E-03
40GO:0006072: glycerol-3-phosphate metabolic process1.16E-03
41GO:0009647: skotomorphogenesis1.16E-03
42GO:0009113: purine nucleobase biosynthetic process1.16E-03
43GO:0006164: purine nucleotide biosynthetic process1.16E-03
44GO:0051603: proteolysis involved in cellular protein catabolic process1.45E-03
45GO:0080142: regulation of salicylic acid biosynthetic process1.54E-03
46GO:0051781: positive regulation of cell division1.54E-03
47GO:0071219: cellular response to molecule of bacterial origin1.54E-03
48GO:0042147: retrograde transport, endosome to Golgi1.60E-03
49GO:0018279: protein N-linked glycosylation via asparagine1.97E-03
50GO:0006564: L-serine biosynthetic process1.97E-03
51GO:0044209: AMP salvage1.97E-03
52GO:0045116: protein neddylation1.97E-03
53GO:0036065: fucosylation1.97E-03
54GO:0015986: ATP synthesis coupled proton transport2.00E-03
55GO:0006623: protein targeting to vacuole2.15E-03
56GO:0002229: defense response to oomycetes2.30E-03
57GO:0043248: proteasome assembly2.43E-03
58GO:0030163: protein catabolic process2.61E-03
59GO:1901001: negative regulation of response to salt stress2.91E-03
60GO:0052033: pathogen-associated molecular pattern dependent induction by symbiont of host innate immune response2.91E-03
61GO:0009612: response to mechanical stimulus2.91E-03
62GO:0009615: response to virus3.31E-03
63GO:0010044: response to aluminum ion3.43E-03
64GO:0048528: post-embryonic root development3.43E-03
65GO:0071446: cellular response to salicylic acid stimulus3.43E-03
66GO:0009751: response to salicylic acid3.67E-03
67GO:0006950: response to stress3.89E-03
68GO:0009690: cytokinin metabolic process3.98E-03
69GO:0031540: regulation of anthocyanin biosynthetic process3.98E-03
70GO:0006102: isocitrate metabolic process3.98E-03
71GO:0009642: response to light intensity3.98E-03
72GO:0006526: arginine biosynthetic process4.56E-03
73GO:0006002: fructose 6-phosphate metabolic process4.56E-03
74GO:0010112: regulation of systemic acquired resistance5.16E-03
75GO:0006189: 'de novo' IMP biosynthetic process5.16E-03
76GO:0009060: aerobic respiration5.16E-03
77GO:0046685: response to arsenic-containing substance5.16E-03
78GO:0006099: tricarboxylic acid cycle5.71E-03
79GO:0071577: zinc II ion transmembrane transport5.79E-03
80GO:1900426: positive regulation of defense response to bacterium5.79E-03
81GO:0010205: photoinhibition5.79E-03
82GO:0043067: regulation of programmed cell death5.79E-03
83GO:0042761: very long-chain fatty acid biosynthetic process5.79E-03
84GO:0043069: negative regulation of programmed cell death6.45E-03
85GO:0051707: response to other organism7.04E-03
86GO:0016485: protein processing7.13E-03
87GO:0072593: reactive oxygen species metabolic process7.13E-03
88GO:0042742: defense response to bacterium7.80E-03
89GO:0009735: response to cytokinin7.82E-03
90GO:0016925: protein sumoylation7.84E-03
91GO:0006979: response to oxidative stress7.91E-03
92GO:0006094: gluconeogenesis8.57E-03
93GO:0006829: zinc II ion transport8.57E-03
94GO:0006812: cation transport8.84E-03
95GO:0009664: plant-type cell wall organization8.84E-03
96GO:0007034: vacuolar transport9.33E-03
97GO:0010053: root epidermal cell differentiation1.01E-02
98GO:0009969: xyloglucan biosynthetic process1.01E-02
99GO:0006071: glycerol metabolic process1.09E-02
100GO:0048316: seed development1.16E-02
101GO:0006289: nucleotide-excision repair1.17E-02
102GO:0009116: nucleoside metabolic process1.17E-02
103GO:0009863: salicylic acid mediated signaling pathway1.17E-02
104GO:0009626: plant-type hypersensitive response1.20E-02
105GO:0009695: jasmonic acid biosynthetic process1.26E-02
106GO:0016998: cell wall macromolecule catabolic process1.34E-02
107GO:0031408: oxylipin biosynthetic process1.34E-02
108GO:0009814: defense response, incompatible interaction1.43E-02
109GO:0009408: response to heat1.63E-02
110GO:0000413: protein peptidyl-prolyl isomerization1.81E-02
111GO:0010051: xylem and phloem pattern formation1.81E-02
112GO:0010118: stomatal movement1.81E-02
113GO:0042631: cellular response to water deprivation1.81E-02
114GO:0048868: pollen tube development1.91E-02
115GO:0010154: fruit development1.91E-02
116GO:0009790: embryo development1.99E-02
117GO:0048825: cotyledon development2.11E-02
118GO:0009749: response to glucose2.11E-02
119GO:0010193: response to ozone2.22E-02
120GO:0080156: mitochondrial mRNA modification2.22E-02
121GO:0007623: circadian rhythm2.35E-02
122GO:0006914: autophagy2.54E-02
123GO:0009567: double fertilization forming a zygote and endosperm2.54E-02
124GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process2.63E-02
125GO:0000910: cytokinesis2.77E-02
126GO:0009617: response to bacterium2.80E-02
127GO:0006888: ER to Golgi vesicle-mediated transport3.24E-02
128GO:0009817: defense response to fungus, incompatible interaction3.48E-02
129GO:0009826: unidimensional cell growth3.50E-02
130GO:0009832: plant-type cell wall biogenesis3.61E-02
131GO:0009813: flavonoid biosynthetic process3.61E-02
132GO:0015031: protein transport3.66E-02
133GO:0006499: N-terminal protein myristoylation3.73E-02
134GO:0010043: response to zinc ion3.86E-02
135GO:0009867: jasmonic acid mediated signaling pathway4.12E-02
136GO:0045087: innate immune response4.12E-02
137GO:0055085: transmembrane transport4.49E-02
138GO:0030001: metal ion transport4.52E-02
139GO:0006631: fatty acid metabolic process4.66E-02
140GO:0042542: response to hydrogen peroxide4.79E-02
141GO:0050832: defense response to fungus4.90E-02
142GO:0009926: auxin polar transport4.93E-02
143GO:0009744: response to sucrose4.93E-02
RankGO TermAdjusted P value
1GO:0003796: lysozyme activity0.00E+00
2GO:0008777: acetylornithine deacetylase activity0.00E+00
3GO:0008752: FMN reductase activity0.00E+00
4GO:0016639: oxidoreductase activity, acting on the CH-NH2 group of donors, NAD or NADP as acceptor0.00E+00
5GO:0033759: flavone synthase activity0.00E+00
6GO:0016881: acid-amino acid ligase activity0.00E+00
7GO:0008455: alpha-1,6-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity0.00E+00
8GO:0004637: phosphoribosylamine-glycine ligase activity0.00E+00
9GO:0052873: FMN reductase (NADPH) activity0.00E+00
10GO:0005212: structural constituent of eye lens0.00E+00
11GO:0003756: protein disulfide isomerase activity1.58E-09
12GO:0004298: threonine-type endopeptidase activity4.55E-08
13GO:0004579: dolichyl-diphosphooligosaccharide-protein glycotransferase activity4.54E-07
14GO:0008233: peptidase activity6.25E-06
15GO:0051287: NAD binding1.15E-05
16GO:0004576: oligosaccharyl transferase activity3.60E-05
17GO:0004722: protein serine/threonine phosphatase activity1.24E-04
18GO:0019786: Atg8-specific protease activity2.25E-04
19GO:0004321: fatty-acyl-CoA synthase activity2.25E-04
20GO:0008886: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (non-phosphorylating) activity2.25E-04
21GO:0004568: chitinase activity4.12E-04
22GO:0008517: folic acid transporter activity5.00E-04
23GO:0004776: succinate-CoA ligase (GDP-forming) activity5.00E-04
24GO:0019903: protein phosphatase binding5.00E-04
25GO:0050291: sphingosine N-acyltransferase activity5.00E-04
26GO:0004618: phosphoglycerate kinase activity5.00E-04
27GO:0019781: NEDD8 activating enzyme activity5.00E-04
28GO:0004617: phosphoglycerate dehydrogenase activity5.00E-04
29GO:0008805: carbon-monoxide oxygenase activity5.00E-04
30GO:0018708: thiol S-methyltransferase activity5.00E-04
31GO:0004775: succinate-CoA ligase (ADP-forming) activity5.00E-04
32GO:0019779: Atg8 activating enzyme activity5.00E-04
33GO:0003746: translation elongation factor activity6.99E-04
34GO:0004367: glycerol-3-phosphate dehydrogenase [NAD+] activity8.13E-04
35GO:0003955: NAD(P)H dehydrogenase (quinone) activity8.13E-04
36GO:0004365: glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity1.16E-03
37GO:0035529: NADH pyrophosphatase activity1.16E-03
38GO:0003999: adenine phosphoribosyltransferase activity1.16E-03
39GO:0004449: isocitrate dehydrogenase (NAD+) activity1.16E-03
40GO:0019776: Atg8 ligase activity1.54E-03
41GO:0015368: calcium:cation antiporter activity1.54E-03
42GO:0010011: auxin binding1.54E-03
43GO:0015369: calcium:proton antiporter activity1.54E-03
44GO:0070628: proteasome binding1.54E-03
45GO:0046933: proton-transporting ATP synthase activity, rotational mechanism1.87E-03
46GO:0046873: metal ion transmembrane transporter activity1.87E-03
47GO:0005496: steroid binding1.97E-03
48GO:0031386: protein tag1.97E-03
49GO:0047631: ADP-ribose diphosphatase activity1.97E-03
50GO:0008641: small protein activating enzyme activity1.97E-03
51GO:0004040: amidase activity1.97E-03
52GO:0016853: isomerase activity2.00E-03
53GO:0015035: protein disulfide oxidoreductase activity2.25E-03
54GO:0031593: polyubiquitin binding2.43E-03
55GO:0000210: NAD+ diphosphatase activity2.43E-03
56GO:0102391: decanoate--CoA ligase activity2.91E-03
57GO:0004467: long-chain fatty acid-CoA ligase activity3.43E-03
58GO:0008107: galactoside 2-alpha-L-fucosyltransferase activity3.43E-03
59GO:0008121: ubiquinol-cytochrome-c reductase activity3.43E-03
60GO:0003872: 6-phosphofructokinase activity3.43E-03
61GO:0015491: cation:cation antiporter activity3.98E-03
62GO:0005507: copper ion binding4.22E-03
63GO:0008417: fucosyltransferase activity5.16E-03
64GO:0016207: 4-coumarate-CoA ligase activity5.16E-03
65GO:0008889: glycerophosphodiester phosphodiesterase activity5.16E-03
66GO:0000989: transcription factor activity, transcription factor binding5.16E-03
67GO:0003993: acid phosphatase activity5.71E-03
68GO:0030955: potassium ion binding5.79E-03
69GO:0004743: pyruvate kinase activity5.79E-03
70GO:0045309: protein phosphorylated amino acid binding5.79E-03
71GO:0005509: calcium ion binding6.78E-03
72GO:0005524: ATP binding7.00E-03
73GO:0008559: xenobiotic-transporting ATPase activity7.13E-03
74GO:0008794: arsenate reductase (glutaredoxin) activity7.13E-03
75GO:0019904: protein domain specific binding7.13E-03
76GO:0004521: endoribonuclease activity7.84E-03
77GO:0008266: poly(U) RNA binding9.33E-03
78GO:0008061: chitin binding1.01E-02
79GO:0003712: transcription cofactor activity1.01E-02
80GO:0005385: zinc ion transmembrane transporter activity1.17E-02
81GO:0043130: ubiquitin binding1.17E-02
82GO:0008324: cation transmembrane transporter activity1.26E-02
83GO:0005199: structural constituent of cell wall1.91E-02
84GO:0001085: RNA polymerase II transcription factor binding1.91E-02
85GO:0010181: FMN binding2.01E-02
86GO:0004872: receptor activity2.11E-02
87GO:0003684: damaged DNA binding2.54E-02
88GO:0008483: transaminase activity2.65E-02
89GO:0008237: metallopeptidase activity2.65E-02
90GO:0016597: amino acid binding2.77E-02
91GO:0016887: ATPase activity2.83E-02
92GO:0042626: ATPase activity, coupled to transmembrane movement of substances2.99E-02
93GO:0008375: acetylglucosaminyltransferase activity3.12E-02
94GO:0009931: calcium-dependent protein serine/threonine kinase activity3.12E-02
95GO:0004683: calmodulin-dependent protein kinase activity3.24E-02
96GO:0030247: polysaccharide binding3.24E-02
97GO:0008168: methyltransferase activity3.50E-02
98GO:0000287: magnesium ion binding3.56E-02
99GO:0004222: metalloendopeptidase activity3.73E-02
100GO:0001228: transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding3.86E-02
101GO:0003697: single-stranded DNA binding4.12E-02
102GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors4.12E-02
103GO:0008422: beta-glucosidase activity4.39E-02
104GO:0050661: NADP binding4.52E-02
105GO:0003729: mRNA binding4.59E-02
106GO:0004364: glutathione transferase activity4.79E-02
107GO:0020037: heme binding4.99E-02
RankGO TermAdjusted P value
1GO:0000327: lytic vacuole within protein storage vacuole0.00E+00
2GO:0005783: endoplasmic reticulum3.07E-12
3GO:0005788: endoplasmic reticulum lumen1.22E-11
4GO:0000502: proteasome complex9.24E-10
5GO:0005774: vacuolar membrane1.85E-08
6GO:0005794: Golgi apparatus2.07E-08
7GO:0005839: proteasome core complex4.55E-08
8GO:0008250: oligosaccharyltransferase complex4.54E-07
9GO:0005886: plasma membrane2.96E-05
10GO:0000275: mitochondrial proton-transporting ATP synthase complex, catalytic core F(1)3.60E-05
11GO:0005773: vacuole4.22E-05
12GO:0005829: cytosol7.16E-05
13GO:0030904: retromer complex8.46E-05
14GO:0009506: plasmodesma2.02E-04
15GO:0009510: plasmodesmatal desmotubule2.25E-04
16GO:0019773: proteasome core complex, alpha-subunit complex2.44E-04
17GO:0009505: plant-type cell wall2.88E-04
18GO:0016020: membrane5.15E-04
19GO:0005750: mitochondrial respiratory chain complex III6.96E-04
20GO:0005753: mitochondrial proton-transporting ATP synthase complex7.77E-04
21GO:0009530: primary cell wall8.13E-04
22GO:0046861: glyoxysomal membrane8.13E-04
23GO:0031902: late endosome membrane8.67E-04
24GO:0009331: glycerol-3-phosphate dehydrogenase complex1.16E-03
25GO:0071782: endoplasmic reticulum tubular network1.16E-03
26GO:0005775: vacuolar lumen1.16E-03
27GO:0005776: autophagosome1.54E-03
28GO:0005945: 6-phosphofructokinase complex1.97E-03
29GO:0005771: multivesicular body2.43E-03
30GO:0071458: integral component of cytoplasmic side of endoplasmic reticulum membrane3.98E-03
31GO:0000421: autophagosome membrane3.98E-03
32GO:0000326: protein storage vacuole4.56E-03
33GO:0009514: glyoxysome4.56E-03
34GO:0000325: plant-type vacuole4.98E-03
35GO:0031090: organelle membrane5.16E-03
36GO:0005789: endoplasmic reticulum membrane5.19E-03
37GO:0005740: mitochondrial envelope6.45E-03
38GO:0017119: Golgi transport complex6.45E-03
39GO:0008541: proteasome regulatory particle, lid subcomplex7.13E-03
40GO:0016021: integral component of membrane8.65E-03
41GO:0005795: Golgi stack1.01E-02
42GO:0005758: mitochondrial intermembrane space1.17E-02
43GO:0005618: cell wall1.25E-02
44GO:0005741: mitochondrial outer membrane1.34E-02
45GO:0031410: cytoplasmic vesicle1.43E-02
46GO:0005730: nucleolus1.93E-02
47GO:0009504: cell plate2.11E-02
48GO:0032580: Golgi cisterna membrane2.54E-02
49GO:0048046: apoplast2.75E-02
50GO:0005667: transcription factor complex3.12E-02
51GO:0022626: cytosolic ribosome3.17E-02
52GO:0009507: chloroplast3.22E-02
53GO:0009570: chloroplast stroma3.54E-02
54GO:0015934: large ribosomal subunit3.86E-02
55GO:0005874: microtubule4.34E-02
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Gene type



Gene DE type