co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G28480

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0071985: multivesicular body sorting pathway	0.00E+00
2	GO:0006654: phosphatidic acid biosynthetic process	0.00E+00
3	GO:1902289: negative regulation of defense response to oomycetes	0.00E+00
4	GO:0005993: trehalose catabolic process	0.00E+00
5	GO:2000378: negative regulation of reactive oxygen species metabolic process	0.00E+00
6	GO:0052386: cell wall thickening	0.00E+00
7	GO:0010407: non-classical arabinogalactan protein metabolic process	0.00E+00
8	GO:0019427: acetyl-CoA biosynthetic process from acetate	0.00E+00
9	GO:0043619: regulation of transcription from RNA polymerase II promoter in response to oxidative stress	0.00E+00
10	GO:0080149: sucrose induced translational repression	0.00E+00
11	GO:0097250: mitochondrial respiratory chain supercomplex assembly	0.00E+00
12	GO:1902009: positive regulation of toxin transport	0.00E+00
13	GO:0010499: proteasomal ubiquitin-independent protein catabolic process	0.00E+00
14	GO:0051553: flavone biosynthetic process	0.00E+00
15	GO:2000068: regulation of defense response to insect	0.00E+00
16	GO:0016192: vesicle-mediated transport	5.65E-07
17	GO:0006605: protein targeting	1.09E-05
18	GO:0000077: DNA damage checkpoint	3.42E-04
19	GO:0042350: GDP-L-fucose biosynthetic process	3.42E-04
20	GO:1990641: response to iron ion starvation	3.42E-04
21	GO:0010421: hydrogen peroxide-mediated programmed cell death	3.42E-04
22	GO:1990022: RNA polymerase III complex localization to nucleus	3.42E-04
23	GO:0044376: RNA polymerase II complex import to nucleus	3.42E-04
24	GO:0051090: regulation of sequence-specific DNA binding transcription factor activity	3.42E-04
25	GO:0019478: D-amino acid catabolic process	3.42E-04
26	GO:0006680: glucosylceramide catabolic process	3.42E-04
27	GO:0006083: acetate metabolic process	3.42E-04
28	GO:0016559: peroxisome fission	3.67E-04
29	GO:0006102: isocitrate metabolic process	3.67E-04
30	GO:0006886: intracellular protein transport	4.23E-04
31	GO:0015031: protein transport	4.39E-04
32	GO:0030968: endoplasmic reticulum unfolded protein response	4.51E-04
33	GO:0006623: protein targeting to vacuole	4.57E-04
34	GO:0008202: steroid metabolic process	6.39E-04
35	GO:0051607: defense response to virus	7.42E-04
36	GO:0080151: positive regulation of salicylic acid mediated signaling pathway	7.45E-04
37	GO:0006568: tryptophan metabolic process	7.45E-04
38	GO:0009805: coumarin biosynthetic process	7.45E-04
39	GO:0042853: L-alanine catabolic process	7.45E-04
40	GO:0040020: regulation of meiotic nuclear division	7.45E-04
41	GO:0006101: citrate metabolic process	7.45E-04
42	GO:0033512: L-lysine catabolic process to acetyl-CoA via saccharopine	7.45E-04
43	GO:0051252: regulation of RNA metabolic process	7.45E-04
44	GO:0000266: mitochondrial fission	9.79E-04
45	GO:0055046: microgametogenesis	1.11E-03
46	GO:0032504: multicellular organism reproduction	1.21E-03
47	GO:0010476: gibberellin mediated signaling pathway	1.21E-03
48	GO:0010325: raffinose family oligosaccharide biosynthetic process	1.21E-03
49	GO:0009410: response to xenobiotic stimulus	1.21E-03
50	GO:0061158: 3'-UTR-mediated mRNA destabilization	1.21E-03
51	GO:0042351: 'de novo' GDP-L-fucose biosynthetic process	1.21E-03
52	GO:0010253: UDP-rhamnose biosynthetic process	1.21E-03
53	GO:0044375: regulation of peroxisome size	1.21E-03
54	GO:0072661: protein targeting to plasma membrane	1.21E-03
55	GO:0007033: vacuole organization	1.39E-03
56	GO:0000162: tryptophan biosynthetic process	1.55E-03
57	GO:0006099: tricarboxylic acid cycle	1.58E-03
58	GO:0030150: protein import into mitochondrial matrix	1.72E-03
59	GO:0051639: actin filament network formation	1.74E-03
60	GO:0002239: response to oomycetes	1.74E-03
61	GO:0072334: UDP-galactose transmembrane transport	1.74E-03
62	GO:0009226: nucleotide-sugar biosynthetic process	1.74E-03
63	GO:0009963: positive regulation of flavonoid biosynthetic process	1.74E-03
64	GO:0071323: cellular response to chitin	1.74E-03
65	GO:0055070: copper ion homeostasis	1.74E-03
66	GO:0001676: long-chain fatty acid metabolic process	1.74E-03
67	GO:0006631: fatty acid metabolic process	1.86E-03
68	GO:0051707: response to other organism	2.06E-03
69	GO:0009939: positive regulation of gibberellic acid mediated signaling pathway	2.33E-03
70	GO:0051764: actin crosslink formation	2.33E-03
71	GO:1902584: positive regulation of response to water deprivation	2.33E-03
72	GO:0006621: protein retention in ER lumen	2.33E-03
73	GO:0045927: positive regulation of growth	2.98E-03
74	GO:0097428: protein maturation by iron-sulfur cluster transfer	2.98E-03
75	GO:0006097: glyoxylate cycle	2.98E-03
76	GO:0009229: thiamine diphosphate biosynthetic process	2.98E-03
77	GO:0006555: methionine metabolic process	3.68E-03
78	GO:0009920: cell plate formation involved in plant-type cell wall biogenesis	3.68E-03
79	GO:0010315: auxin efflux	3.68E-03
80	GO:1900425: negative regulation of defense response to bacterium	3.68E-03
81	GO:0009228: thiamine biosynthetic process	3.68E-03
82	GO:0006014: D-ribose metabolic process	3.68E-03
83	GO:0009759: indole glucosinolate biosynthetic process	3.68E-03
84	GO:0019509: L-methionine salvage from methylthioadenosine	4.43E-03
85	GO:0052033: pathogen-associated molecular pattern dependent induction by symbiont of host innate immune response	4.43E-03
86	GO:0030643: cellular phosphate ion homeostasis	4.43E-03
87	GO:0034389: lipid particle organization	4.43E-03
88	GO:0017148: negative regulation of translation	4.43E-03
89	GO:0080113: regulation of seed growth	4.43E-03
90	GO:0048444: floral organ morphogenesis	4.43E-03
91	GO:0006744: ubiquinone biosynthetic process	5.23E-03
92	GO:0080186: developmental vegetative growth	5.23E-03
93	GO:0006614: SRP-dependent cotranslational protein targeting to membrane	5.23E-03
94	GO:0010044: response to aluminum ion	5.23E-03
95	GO:0007155: cell adhesion	6.08E-03
96	GO:0009819: drought recovery	6.08E-03
97	GO:0045010: actin nucleation	6.08E-03
98	GO:0009816: defense response to bacterium, incompatible interaction	6.45E-03
99	GO:0006906: vesicle fusion	6.81E-03
100	GO:0009699: phenylpropanoid biosynthetic process	6.98E-03
101	GO:0006002: fructose 6-phosphate metabolic process	6.98E-03
102	GO:0015996: chlorophyll catabolic process	6.98E-03
103	GO:0010417: glucuronoxylan biosynthetic process	6.98E-03
104	GO:0015780: nucleotide-sugar transport	7.91E-03
105	GO:0009835: fruit ripening	7.91E-03
106	GO:0007338: single fertilization	7.91E-03
107	GO:0010332: response to gamma radiation	7.91E-03
108	GO:0009056: catabolic process	7.91E-03
109	GO:0000902: cell morphogenesis	7.91E-03
110	GO:0090332: stomatal closure	8.89E-03
111	GO:0009086: methionine biosynthetic process	8.89E-03
112	GO:0051555: flavonol biosynthetic process	9.92E-03
113	GO:0000103: sulfate assimilation	9.92E-03
114	GO:0006457: protein folding	1.05E-02
115	GO:0007275: multicellular organism development	1.06E-02
116	GO:0009617: response to bacterium	1.19E-02
117	GO:0006887: exocytosis	1.20E-02
118	GO:2000012: regulation of auxin polar transport	1.32E-02
119	GO:0032436: positive regulation of proteasomal ubiquitin-dependent protein catabolic process	1.32E-02
120	GO:0030036: actin cytoskeleton organization	1.32E-02
121	GO:0000209: protein polyubiquitination	1.36E-02
122	GO:0034605: cellular response to heat	1.44E-02
123	GO:0002237: response to molecule of bacterial origin	1.44E-02
124	GO:0007015: actin filament organization	1.44E-02
125	GO:0010053: root epidermal cell differentiation	1.56E-02
126	GO:0009225: nucleotide-sugar metabolic process	1.56E-02
127	GO:0007031: peroxisome organization	1.56E-02
128	GO:0007030: Golgi organization	1.56E-02
129	GO:0009825: multidimensional cell growth	1.56E-02
130	GO:0090351: seedling development	1.56E-02
131	GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process	1.59E-02
132	GO:0034976: response to endoplasmic reticulum stress	1.69E-02
133	GO:0009863: salicylic acid mediated signaling pathway	1.82E-02
134	GO:0051017: actin filament bundle assembly	1.82E-02
135	GO:0008299: isoprenoid biosynthetic process	1.95E-02
136	GO:0019915: lipid storage	2.08E-02
137	GO:0009269: response to desiccation	2.08E-02
138	GO:0009814: defense response, incompatible interaction	2.22E-02
139	GO:0030433: ubiquitin-dependent ERAD pathway	2.22E-02
140	GO:0031348: negative regulation of defense response	2.22E-02
141	GO:0019748: secondary metabolic process	2.22E-02
142	GO:0009620: response to fungus	2.30E-02
143	GO:0009411: response to UV	2.37E-02
144	GO:0009553: embryo sac development	2.44E-02
145	GO:0010584: pollen exine formation	2.51E-02
146	GO:0042127: regulation of cell proliferation	2.51E-02
147	GO:0009561: megagametogenesis	2.51E-02
148	GO:0009306: protein secretion	2.51E-02
149	GO:0010051: xylem and phloem pattern formation	2.81E-02
150	GO:0045489: pectin biosynthetic process	2.96E-02
151	GO:0006662: glycerol ether metabolic process	2.96E-02
152	GO:0019252: starch biosynthetic process	3.28E-02
153	GO:0002229: defense response to oomycetes	3.44E-02
154	GO:0006891: intra-Golgi vesicle-mediated transport	3.44E-02
155	GO:0010193: response to ozone	3.44E-02
156	GO:0009751: response to salicylic acid	3.47E-02
157	GO:0016032: viral process	3.61E-02
158	GO:0009790: embryo development	3.68E-02
159	GO:0009567: double fertilization forming a zygote and endosperm	3.95E-02
160	GO:0019760: glucosinolate metabolic process	3.95E-02
161	GO:0010150: leaf senescence	4.34E-02
162	GO:0001666: response to hypoxia	4.47E-02

Rank	GO Term	Adjusted P value
1	GO:0033759: flavone synthase activity	0.00E+00
2	GO:0070577: lysine-acetylated histone binding	0.00E+00
3	GO:0052684: L-serine hydro-lyase (adding indole, L-tryptophan-forming) activity	0.00E+00
4	GO:0050334: thiaminase activity	0.00E+00
5	GO:0004555: alpha,alpha-trehalase activity	0.00E+00
6	GO:0005046: KDEL sequence binding	0.00E+00
7	GO:0015165: pyrimidine nucleotide-sugar transmembrane transporter activity	0.00E+00
8	GO:0061133: endopeptidase activator activity	0.00E+00
9	GO:0051499: D-aminoacyl-tRNA deacylase activity	0.00E+00
10	GO:0016504: peptidase activator activity	0.00E+00
11	GO:0034338: short-chain carboxylesterase activity	0.00E+00
12	GO:0008320: protein transmembrane transporter activity	7.28E-06
13	GO:0005460: UDP-glucose transmembrane transporter activity	4.12E-05
14	GO:0070628: proteasome binding	7.33E-05
15	GO:0005459: UDP-galactose transmembrane transporter activity	1.15E-04
16	GO:0050577: GDP-L-fucose synthase activity	3.42E-04
17	GO:0003987: acetate-CoA ligase activity	3.42E-04
18	GO:0004425: indole-3-glycerol-phosphate synthase activity	3.42E-04
19	GO:0015927: trehalase activity	3.42E-04
20	GO:0032266: phosphatidylinositol-3-phosphate binding	3.42E-04
21	GO:0004348: glucosylceramidase activity	3.42E-04
22	GO:0047150: betaine-homocysteine S-methyltransferase activity	3.42E-04
23	GO:0030942: endoplasmic reticulum signal peptide binding	3.42E-04
24	GO:0102293: pheophytinase b activity	3.42E-04
25	GO:0004149: dihydrolipoyllysine-residue succinyltransferase activity	3.42E-04
26	GO:0008142: oxysterol binding	4.51E-04
27	GO:0010297: heteropolysaccharide binding	7.45E-04
28	GO:0008460: dTDP-glucose 4,6-dehydratase activity	7.45E-04
29	GO:0003994: aconitate hydratase activity	7.45E-04
30	GO:0010280: UDP-L-rhamnose synthase activity	7.45E-04
31	GO:0050347: trans-octaprenyltranstransferase activity	7.45E-04
32	GO:0052924: all-trans-nonaprenyl-diphosphate synthase (geranylgeranyl-diphosphate specific) activity	7.45E-04
33	GO:0000774: adenyl-nucleotide exchange factor activity	7.45E-04
34	GO:0032934: sterol binding	7.45E-04
35	GO:0008428: ribonuclease inhibitor activity	7.45E-04
36	GO:0050377: UDP-glucose 4,6-dehydratase activity	7.45E-04
37	GO:0048531: beta-1,3-galactosyltransferase activity	7.45E-04
38	GO:0047443: 4-hydroxy-4-methyl-2-oxoglutarate aldolase activity	7.45E-04
39	GO:0047746: chlorophyllase activity	7.45E-04
40	GO:0010331: gibberellin binding	7.45E-04
41	GO:0010309: acireductone dioxygenase [iron(II)-requiring] activity	1.21E-03
42	GO:0043130: ubiquitin binding	1.72E-03
43	GO:0035529: NADH pyrophosphatase activity	1.74E-03
44	GO:0004021: L-alanine:2-oxoglutarate aminotransferase activity	1.74E-03
45	GO:0004449: isocitrate dehydrogenase (NAD+) activity	1.74E-03
46	GO:0016656: monodehydroascorbate reductase (NADH) activity	1.74E-03
47	GO:0004834: tryptophan synthase activity	2.33E-03
48	GO:0046923: ER retention sequence binding	2.33E-03
49	GO:0004659: prenyltransferase activity	2.33E-03
50	GO:0008948: oxaloacetate decarboxylase activity	2.98E-03
51	GO:0004623: phospholipase A2 activity	2.98E-03
52	GO:0047631: ADP-ribose diphosphatase activity	2.98E-03
53	GO:0016853: isomerase activity	3.67E-03
54	GO:0000210: NAD+ diphosphatase activity	3.68E-03
55	GO:0016208: AMP binding	3.68E-03
56	GO:0102391: decanoate--CoA ligase activity	4.43E-03
57	GO:0004747: ribokinase activity	4.43E-03
58	GO:0003872: 6-phosphofructokinase activity	5.23E-03
59	GO:0004467: long-chain fatty acid-CoA ligase activity	5.23E-03
60	GO:0008312: 7S RNA binding	6.08E-03
61	GO:0052747: sinapyl alcohol dehydrogenase activity	6.08E-03
62	GO:0004869: cysteine-type endopeptidase inhibitor activity	6.08E-03
63	GO:0008865: fructokinase activity	6.08E-03
64	GO:0004630: phospholipase D activity	6.98E-03
65	GO:0070290: N-acylphosphatidylethanolamine-specific phospholipase D activity	6.98E-03
66	GO:0004806: triglyceride lipase activity	7.19E-03
67	GO:0008138: protein tyrosine/serine/threonine phosphatase activity	7.91E-03
68	GO:0030234: enzyme regulator activity	9.92E-03
69	GO:0003746: translation elongation factor activity	1.01E-02
70	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	1.01E-02
71	GO:0004161: dimethylallyltranstransferase activity	1.10E-02
72	GO:0000149: SNARE binding	1.11E-02
73	GO:0008378: galactosyltransferase activity	1.21E-02
74	GO:0045551: cinnamyl-alcohol dehydrogenase activity	1.21E-02
75	GO:0005484: SNAP receptor activity	1.31E-02
76	GO:0031624: ubiquitin conjugating enzyme binding	1.44E-02
77	GO:0005198: structural molecule activity	1.47E-02
78	GO:0004867: serine-type endopeptidase inhibitor activity	1.56E-02
79	GO:0008061: chitin binding	1.56E-02
80	GO:0003712: transcription cofactor activity	1.56E-02
81	GO:0004725: protein tyrosine phosphatase activity	1.69E-02
82	GO:0051536: iron-sulfur cluster binding	1.82E-02
83	GO:0016887: ATPase activity	1.85E-02
84	GO:0051087: chaperone binding	1.95E-02
85	GO:0031625: ubiquitin protein ligase binding	1.96E-02
86	GO:0008408: 3'-5' exonuclease activity	2.08E-02
87	GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity	2.22E-02
88	GO:0061630: ubiquitin protein ligase activity	2.32E-02
89	GO:0022857: transmembrane transporter activity	2.37E-02
90	GO:0003756: protein disulfide isomerase activity	2.51E-02
91	GO:0003727: single-stranded RNA binding	2.51E-02
92	GO:0051082: unfolded protein binding	2.52E-02
93	GO:0015035: protein disulfide oxidoreductase activity	2.59E-02
94	GO:0005102: receptor binding	2.66E-02
95	GO:0047134: protein-disulfide reductase activity	2.66E-02
96	GO:0042803: protein homodimerization activity	2.89E-02
97	GO:0004527: exonuclease activity	2.96E-02
98	GO:0016758: transferase activity, transferring hexosyl groups	3.07E-02
99	GO:0004791: thioredoxin-disulfide reductase activity	3.12E-02
100	GO:0050662: coenzyme binding	3.12E-02
101	GO:0004872: receptor activity	3.28E-02
102	GO:0030170: pyridoxal phosphate binding	3.50E-02
103	GO:0003924: GTPase activity	3.54E-02
104	GO:0008565: protein transporter activity	3.77E-02
105	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	3.78E-02
106	GO:0051015: actin filament binding	3.78E-02
107	GO:0005507: copper ion binding	3.80E-02
108	GO:0016791: phosphatase activity	3.95E-02
109	GO:0051213: dioxygenase activity	4.47E-02
110	GO:0005524: ATP binding	4.98E-02

Rank	GO Term	Adjusted P value
1	GO:0005783: endoplasmic reticulum	4.87E-06
2	GO:0031901: early endosome membrane	2.17E-05
3	GO:0005789: endoplasmic reticulum membrane	5.62E-05
4	GO:0030173: integral component of Golgi membrane	2.25E-04
5	GO:0005801: cis-Golgi network	2.25E-04
6	GO:0033116: endoplasmic reticulum-Golgi intermediate compartment membrane	2.93E-04
7	GO:0005794: Golgi apparatus	3.14E-04
8	GO:0045252: oxoglutarate dehydrogenase complex	3.42E-04
9	GO:0001405: presequence translocase-associated import motor	3.42E-04
10	GO:0030665: clathrin-coated vesicle membrane	6.39E-04
11	GO:0017119: Golgi transport complex	7.45E-04
12	GO:0030134: ER to Golgi transport vesicle	7.45E-04
13	GO:0000814: ESCRT II complex	7.45E-04
14	GO:0005788: endoplasmic reticulum lumen	8.55E-04
15	GO:0030176: integral component of endoplasmic reticulum membrane	1.39E-03
16	GO:0032432: actin filament bundle	1.74E-03
17	GO:0030658: transport vesicle membrane	1.74E-03
18	GO:0031902: late endosome membrane	1.86E-03
19	GO:0005744: mitochondrial inner membrane presequence translocase complex	2.71E-03
20	GO:0005945: 6-phosphofructokinase complex	2.98E-03
21	GO:0005885: Arp2/3 protein complex	4.43E-03
22	GO:0016592: mediator complex	4.50E-03
23	GO:0009506: plasmodesma	4.63E-03
24	GO:0032580: Golgi cisterna membrane	5.11E-03
25	GO:0009986: cell surface	5.23E-03
26	GO:0005778: peroxisomal membrane	5.43E-03
27	GO:0005774: vacuolar membrane	5.85E-03
28	GO:0005623: cell	6.52E-03
29	GO:0009514: glyoxysome	6.98E-03
30	GO:0005779: integral component of peroxisomal membrane	6.98E-03
31	GO:0005786: signal recognition particle, endoplasmic reticulum targeting	6.98E-03
32	GO:0005811: lipid particle	6.98E-03
33	GO:0005829: cytosol	7.38E-03
34	GO:0016021: integral component of membrane	7.49E-03
35	GO:0008540: proteasome regulatory particle, base subcomplex	8.89E-03
36	GO:0005886: plasma membrane	1.08E-02
37	GO:0008541: proteasome regulatory particle, lid subcomplex	1.10E-02
38	GO:0005884: actin filament	1.10E-02
39	GO:0031201: SNARE complex	1.20E-02
40	GO:0005795: Golgi stack	1.56E-02
41	GO:0005769: early endosome	1.69E-02
42	GO:0005737: cytoplasm	2.06E-02
43	GO:0005839: proteasome core complex	2.08E-02
44	GO:0005741: mitochondrial outer membrane	2.08E-02
45	GO:0031410: cytoplasmic vesicle	2.22E-02
46	GO:0005770: late endosome	2.96E-02
47	GO:0009504: cell plate	3.28E-02
48	GO:0019898: extrinsic component of membrane	3.28E-02
49	GO:0005615: extracellular space	4.84E-02