gene detail

Gene description

TAIR ID: AT3G25500

Short description: formin homology 1

Pathogen responsiveness: -0.11

General responsiveness: -1.45

Orthologous

Rice: No orthologous gene

Maize:

GRMZM2G044055

Wheat:

TAAFFX.38171.1.S1_AT

GO biological process

barbed-end actin filament capping, actin cytoskeleton organization, actin nucleation

GO cellular component

integral component of membrane, plasma membrane, nucleus, cell wall, membrane

GO molecular function

protein binding

Protein domain

Pfam	PF02181, Formin Homology 2 Domain
SMART	SM00498, FH2

Metabolic pathway

Not involved in metabolic pathway

KEGG pathway

Not involved in KEGG pathway

Transcriptional regulation

Regulator:
AT5G13790, AT4G18770, AT1G24260, AT3G23130

Target:
none

Protein-protein interaction network

The number of partners (degree) is: 3

click to view PPI network

Coexpression network

GSE45212_WT_PSTDC3000_AVRRPT2  view
GSE26679_WT_GC  view
GSE13739_WT_GO  view
GSE13739_EDS16_GO  view
GSE5686_WT_GO  view
GSE26679_EDR1_GC  view

Differentially expressed condition

24 conditions

Series	Control	Treatment	Log₂FC	Adj. P value
GSE12856	Col, ataf1, control	Col, ataf1, Bg h	-1.64	1.49E-06
GSE17464	Laer, control	Laer, Flg22 1 h	-2.05	4.62E-05
GSE17464	Laer, control	Laer, Flg22 2 h	-2.37	7.16E-06
GSE17464	Penta, control	Penta, Flg22 2 h	-1.94	1.08E-04
GSE17464	Penta, control	Penta, Flg22 2 h	-2.01	7.00E-05
GSE17500	Col, 35S:AFB1, control 0 h	Col, 35S:AFB1, PstDC3000 24 h	-1.78	3.61E-05
GSE17500	Col, WT, control 0 h	Col, WT, PstDC3000 24 h	-2.02	6.15E-06
GSE17500	Col, miR393, control 0 h	Col, miR393, PstDC3000 24 h	-1.80	2.58E-05
GSE18978	Col, WT, control 24 h	Col, WT, PsmES4326 24 h	-2.84	1.88E-06
GSE21920	Col, WT, mock	Col, WT, Pto HopZ1a 6 h	-1.61	3.06E-07
GSE50526	Col, WT, mock 24 h	Col, WT, A. brassicicola 24 h	-1.65	4.31E-02
GSE50526	Col, WT, mock 9 h	Col, WT, A. brassicicola 9 h	-1.52	3.80E-02
GSE5520	Col, WT, control 10 h	Col, WT, Cor- 10 h	-2.53	6.25E-06
GSE5520	Col, WT, control 10 h	Col, WT, Cor- hrpS- 10 h	-1.56	1.44E-02
GSE5520	Col, WT, control 24 h	Col, WT, PsDC3118 Cor- 24 h	-1.53	7.48E-03
GSE5520	Col, WT, control 24 h	Col, WT, PstDC3000 24 h	-1.91	4.81E-04
GSE5520	Col, WT, control 7 h	Col, WT, PstDC3000 7 h	-1.89	1.81E-05
GSE5616	Col, WT, water 6 h	Col, WT, P. infestans 6 h	-1.50	1.42E-07
GSE58954	Col, WT, Psm AvrRpt2 0 h	Col, WT, Psm AvrRpt2 6 h	-2.31	4.08E-03
GSE6176	Col, WT, control 12 h	Col, WT, PstDC3000 12 h	-1.61	2.50E-06
GSE6556	Col, gh3.5, control	Col, gh3.5, PstDC3000 AvrRpt2 48 h	-1.75	9.45E-05
GSE9674	Ws-4, AtMYB30 ox, control	Ws-4, AtMYB30 ox, Xanthomonas strain Xcc147 2-4 h	-1.56	2.43E-03
GSE9674	Ws-4, AtMYB30 ox, control	Ws-4, AtMYB30 ox, Xanthomonas strain Xcc147 6 h	-2.47	3.00E-04
GSE9674	Ws-4, WT, control	Ws-4, WT, Xanthomonas strain Xcc147 6 h	-1.98	1.44E-03