co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G25500

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0015822: ornithine transport	0.00E+00
2	GO:0009715: chalcone biosynthetic process	0.00E+00
3	GO:0010583: response to cyclopentenone	1.53E-07
4	GO:0071555: cell wall organization	7.24E-06
5	GO:0080167: response to karrikin	2.43E-05
6	GO:0006833: water transport	2.79E-05
7	GO:0034220: ion transmembrane transport	8.72E-05
8	GO:0007155: cell adhesion	1.32E-04
9	GO:0071554: cell wall organization or biogenesis	1.33E-04
10	GO:0071370: cellular response to gibberellin stimulus	1.73E-04
11	GO:0006723: cuticle hydrocarbon biosynthetic process	1.73E-04
12	GO:0000066: mitochondrial ornithine transport	1.73E-04
13	GO:0007267: cell-cell signaling	1.91E-04
14	GO:0009813: flavonoid biosynthetic process	3.43E-04
15	GO:0006152: purine nucleoside catabolic process	3.92E-04
16	GO:0060919: auxin influx	3.92E-04
17	GO:0009629: response to gravity	3.92E-04
18	GO:1903338: regulation of cell wall organization or biogenesis	3.92E-04
19	GO:0007154: cell communication	3.92E-04
20	GO:0080151: positive regulation of salicylic acid mediated signaling pathway	3.92E-04
21	GO:2000123: positive regulation of stomatal complex development	3.92E-04
22	GO:0048768: root hair cell tip growth	4.87E-04
23	GO:0042546: cell wall biogenesis	6.37E-04
24	GO:0043447: alkane biosynthetic process	6.40E-04
25	GO:0007188: adenylate cyclase-modulating G-protein coupled receptor signaling pathway	6.40E-04
26	GO:0015840: urea transport	6.40E-04
27	GO:0080170: hydrogen peroxide transmembrane transport	9.13E-04
28	GO:0006168: adenine salvage	9.13E-04
29	GO:0006166: purine ribonucleoside salvage	9.13E-04
30	GO:0019722: calcium-mediated signaling	1.04E-03
31	GO:0006085: acetyl-CoA biosynthetic process	1.21E-03
32	GO:0042335: cuticle development	1.21E-03
33	GO:2000038: regulation of stomatal complex development	1.21E-03
34	GO:0006546: glycine catabolic process	1.21E-03
35	GO:0009694: jasmonic acid metabolic process	1.21E-03
36	GO:0006542: glutamine biosynthetic process	1.21E-03
37	GO:0019676: ammonia assimilation cycle	1.21E-03
38	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	1.24E-03
39	GO:0045489: pectin biosynthetic process	1.30E-03
40	GO:0009741: response to brassinosteroid	1.30E-03
41	GO:0032876: negative regulation of DNA endoreduplication	1.54E-03
42	GO:0010375: stomatal complex patterning	1.54E-03
43	GO:0044209: AMP salvage	1.54E-03
44	GO:0045926: negative regulation of growth	2.27E-03
45	GO:0017148: negative regulation of translation	2.27E-03
46	GO:0009554: megasporogenesis	2.27E-03
47	GO:0010555: response to mannitol	2.27E-03
48	GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity	2.27E-03
49	GO:2000067: regulation of root morphogenesis	2.27E-03
50	GO:0016126: sterol biosynthetic process	2.30E-03
51	GO:0006400: tRNA modification	2.67E-03
52	GO:0051510: regulation of unidimensional cell growth	2.67E-03
53	GO:0010411: xyloglucan metabolic process	2.70E-03
54	GO:0008610: lipid biosynthetic process	3.09E-03
55	GO:0006402: mRNA catabolic process	3.09E-03
56	GO:0031540: regulation of anthocyanin biosynthetic process	3.09E-03
57	GO:0052543: callose deposition in cell wall	3.09E-03
58	GO:0007568: aging	3.45E-03
59	GO:0022900: electron transport chain	3.54E-03
60	GO:0006075: (1->3)-beta-D-glucan biosynthetic process	3.54E-03
61	GO:0007186: G-protein coupled receptor signaling pathway	3.54E-03
62	GO:0007389: pattern specification process	3.54E-03
63	GO:0006754: ATP biosynthetic process	4.00E-03
64	GO:0009056: catabolic process	4.00E-03
65	GO:0000902: cell morphogenesis	4.00E-03
66	GO:0009926: auxin polar transport	4.86E-03
67	GO:0009870: defense response signaling pathway, resistance gene-dependent	4.99E-03
68	GO:0048829: root cap development	4.99E-03
69	GO:0010192: mucilage biosynthetic process	4.99E-03
70	GO:0000038: very long-chain fatty acid metabolic process	5.52E-03
71	GO:0009773: photosynthetic electron transport in photosystem I	5.52E-03
72	GO:0009750: response to fructose	5.52E-03
73	GO:0006790: sulfur compound metabolic process	6.06E-03
74	GO:0016024: CDP-diacylglycerol biosynthetic process	6.06E-03
75	GO:2000028: regulation of photoperiodism, flowering	6.61E-03
76	GO:0030036: actin cytoskeleton organization	6.61E-03
77	GO:0050826: response to freezing	6.61E-03
78	GO:0010143: cutin biosynthetic process	7.20E-03
79	GO:0009825: multidimensional cell growth	7.79E-03
80	GO:0010167: response to nitrate	7.79E-03
81	GO:0005985: sucrose metabolic process	7.79E-03
82	GO:0046854: phosphatidylinositol phosphorylation	7.79E-03
83	GO:0006810: transport	7.95E-03
84	GO:0010025: wax biosynthetic process	8.41E-03
85	GO:0009833: plant-type primary cell wall biogenesis	8.41E-03
86	GO:0006468: protein phosphorylation	9.19E-03
87	GO:0032259: methylation	9.64E-03
88	GO:0007017: microtubule-based process	9.69E-03
89	GO:0009695: jasmonic acid biosynthetic process	9.69E-03
90	GO:0009742: brassinosteroid mediated signaling pathway	9.89E-03
91	GO:0031408: oxylipin biosynthetic process	1.03E-02
92	GO:0003333: amino acid transmembrane transport	1.03E-02
93	GO:0015991: ATP hydrolysis coupled proton transport	1.39E-02
94	GO:0000226: microtubule cytoskeleton organization	1.39E-02
95	GO:0000271: polysaccharide biosynthetic process	1.39E-02
96	GO:0080022: primary root development	1.39E-02
97	GO:0010051: xylem and phloem pattern formation	1.39E-02
98	GO:0006633: fatty acid biosynthetic process	1.47E-02
99	GO:0008360: regulation of cell shape	1.47E-02
100	GO:0015986: ATP synthesis coupled proton transport	1.54E-02
101	GO:0009791: post-embryonic development	1.62E-02
102	GO:0007623: circadian rhythm	1.62E-02
103	GO:0009749: response to glucose	1.62E-02
104	GO:0009733: response to auxin	1.76E-02
105	GO:0007264: small GTPase mediated signal transduction	1.78E-02
106	GO:0048235: pollen sperm cell differentiation	1.78E-02
107	GO:0007166: cell surface receptor signaling pathway	1.85E-02
108	GO:1901657: glycosyl compound metabolic process	1.87E-02
109	GO:0009416: response to light stimulus	2.11E-02
110	GO:0051301: cell division	2.35E-02
111	GO:0042128: nitrate assimilation	2.39E-02
112	GO:0016311: dephosphorylation	2.58E-02
113	GO:0016049: cell growth	2.58E-02
114	GO:0030244: cellulose biosynthetic process	2.67E-02
115	GO:0009860: pollen tube growth	2.70E-02
116	GO:0005975: carbohydrate metabolic process	2.75E-02
117	GO:0010311: lateral root formation	2.77E-02
118	GO:0009832: plant-type cell wall biogenesis	2.77E-02
119	GO:0055085: transmembrane transport	2.84E-02
120	GO:0010119: regulation of stomatal movement	2.96E-02
121	GO:0006865: amino acid transport	3.06E-02
122	GO:0009867: jasmonic acid mediated signaling pathway	3.16E-02
123	GO:0016051: carbohydrate biosynthetic process	3.16E-02
124	GO:0046777: protein autophosphorylation	3.32E-02
125	GO:0006839: mitochondrial transport	3.47E-02
126	GO:0009744: response to sucrose	3.79E-02
127	GO:0031347: regulation of defense response	4.34E-02
128	GO:0016042: lipid catabolic process	4.44E-02
129	GO:0006629: lipid metabolic process	4.57E-02
130	GO:0009809: lignin biosynthetic process	4.68E-02
131	GO:0051603: proteolysis involved in cellular protein catabolic process	4.80E-02
132	GO:0010224: response to UV-B	4.80E-02

Rank	GO Term	Adjusted P value
1	GO:0016210: naringenin-chalcone synthase activity	0.00E+00
2	GO:0048307: ferredoxin-nitrite reductase activity	0.00E+00
3	GO:0050421: nitrite reductase (NO-forming) activity	0.00E+00
4	GO:0047974: guanosine deaminase activity	0.00E+00
5	GO:0030795: jasmonate O-methyltransferase activity	0.00E+00
6	GO:0102078: methyl jasmonate methylesterase activity	0.00E+00
7	GO:0047889: ferredoxin-nitrate reductase activity	0.00E+00
8	GO:0010313: phytochrome binding	1.73E-04
9	GO:0003838: sterol 24-C-methyltransferase activity	1.73E-04
10	GO:0045486: naringenin 3-dioxygenase activity	1.73E-04
11	GO:0030797: 24-methylenesterol C-methyltransferase activity	1.73E-04
12	GO:0016413: O-acetyltransferase activity	2.08E-04
13	GO:0015250: water channel activity	2.25E-04
14	GO:0004047: aminomethyltransferase activity	3.92E-04
15	GO:0000064: L-ornithine transmembrane transporter activity	3.92E-04
16	GO:0048531: beta-1,3-galactosyltransferase activity	3.92E-04
17	GO:0102336: 3-oxo-arachidoyl-CoA synthase activity	6.07E-04
18	GO:0102337: 3-oxo-cerotoyl-CoA synthase activity	6.07E-04
19	GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity	6.07E-04
20	GO:0031683: G-protein beta/gamma-subunit complex binding	6.40E-04
21	GO:0001664: G-protein coupled receptor binding	6.40E-04
22	GO:0003878: ATP citrate synthase activity	9.13E-04
23	GO:0048027: mRNA 5'-UTR binding	9.13E-04
24	GO:0003999: adenine phosphoribosyltransferase activity	9.13E-04
25	GO:0001872: (1->3)-beta-D-glucan binding	9.13E-04
26	GO:0010328: auxin influx transmembrane transporter activity	1.21E-03
27	GO:0052793: pectin acetylesterase activity	1.21E-03
28	GO:0045430: chalcone isomerase activity	1.21E-03
29	GO:0015204: urea transmembrane transporter activity	1.21E-03
30	GO:0019901: protein kinase binding	1.50E-03
31	GO:0009922: fatty acid elongase activity	1.54E-03
32	GO:0004356: glutamate-ammonia ligase activity	1.54E-03
33	GO:0045431: flavonol synthase activity	1.54E-03
34	GO:0016762: xyloglucan:xyloglucosyl transferase activity	1.60E-03
35	GO:0004366: glycerol-3-phosphate O-acyltransferase activity	1.89E-03
36	GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity	1.89E-03
37	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	1.92E-03
38	GO:0016759: cellulose synthase activity	1.93E-03
39	GO:0016722: oxidoreductase activity, oxidizing metal ions	2.05E-03
40	GO:0005200: structural constituent of cytoskeleton	2.05E-03
41	GO:0003924: GTPase activity	2.13E-03
42	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	2.27E-03
43	GO:0016621: cinnamoyl-CoA reductase activity	2.67E-03
44	GO:0030247: polysaccharide binding	2.70E-03
45	GO:0016798: hydrolase activity, acting on glycosyl bonds	2.70E-03
46	GO:0004564: beta-fructofuranosidase activity	3.09E-03
47	GO:0003843: 1,3-beta-D-glucan synthase activity	3.54E-03
48	GO:0008553: hydrogen-exporting ATPase activity, phosphorylative mechanism	4.00E-03
49	GO:0016757: transferase activity, transferring glycosyl groups	4.03E-03
50	GO:0004575: sucrose alpha-glucosidase activity	4.49E-03
51	GO:0046961: proton-transporting ATPase activity, rotational mechanism	5.52E-03
52	GO:0052689: carboxylic ester hydrolase activity	7.05E-03
53	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	7.20E-03
54	GO:0004672: protein kinase activity	7.95E-03
55	GO:0004871: signal transducer activity	8.28E-03
56	GO:0004674: protein serine/threonine kinase activity	8.93E-03
57	GO:0031418: L-ascorbic acid binding	9.03E-03
58	GO:0005525: GTP binding	1.08E-02
59	GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity	1.10E-02
60	GO:0016760: cellulose synthase (UDP-forming) activity	1.17E-02
61	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	1.51E-02
62	GO:0004518: nuclease activity	1.78E-02
63	GO:0016791: phosphatase activity	1.95E-02
64	GO:0008483: transaminase activity	2.04E-02
65	GO:0046982: protein heterodimerization activity	2.46E-02
66	GO:0102483: scopolin beta-glucosidase activity	2.48E-02
67	GO:0008757: S-adenosylmethionine-dependent methyltransferase activity	2.58E-02
68	GO:0004693: cyclin-dependent protein serine/threonine kinase activity	2.87E-02
69	GO:0008422: beta-glucosidase activity	3.37E-02
70	GO:0051539: 4 iron, 4 sulfur cluster binding	3.47E-02
71	GO:0004185: serine-type carboxypeptidase activity	3.79E-02
72	GO:0051537: 2 iron, 2 sulfur cluster binding	4.01E-02
73	GO:0015293: symporter activity	4.12E-02

Rank	GO Term	Adjusted P value
1	GO:0009505: plant-type cell wall	2.01E-09
2	GO:0046658: anchored component of plasma membrane	5.37E-07
3	GO:0005576: extracellular region	8.52E-07
4	GO:0009506: plasmodesma	8.27E-06
5	GO:0031225: anchored component of membrane	2.19E-05
6	GO:0005794: Golgi apparatus	4.35E-05
7	GO:0005618: cell wall	4.56E-05
8	GO:0005886: plasma membrane	4.69E-05
9	GO:0048046: apoplast	1.42E-04
10	GO:0033178: proton-transporting two-sector ATPase complex, catalytic domain	3.92E-04
11	GO:0005775: vacuolar lumen	9.13E-04
12	GO:0009346: citrate lyase complex	9.13E-04
13	GO:0005773: vacuole	1.34E-03
14	GO:0000139: Golgi membrane	1.95E-03
15	GO:0016021: integral component of membrane	2.08E-03
16	GO:0042807: central vacuole	2.67E-03
17	GO:0000148: 1,3-beta-D-glucan synthase complex	3.54E-03
18	GO:0000326: protein storage vacuole	3.54E-03
19	GO:0000786: nucleosome	3.61E-03
20	GO:0045298: tubulin complex	4.00E-03
21	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	4.00E-03
22	GO:0048471: perinuclear region of cytoplasm	5.52E-03
23	GO:0005753: mitochondrial proton-transporting ATP synthase complex	7.79E-03
24	GO:0005802: trans-Golgi network	1.04E-02
25	GO:0005768: endosome	1.26E-02
26	GO:0005887: integral component of plasma membrane	1.50E-02
27	GO:0009705: plant-type vacuole membrane	1.62E-02
28	GO:0030529: intracellular ribonucleoprotein complex	2.21E-02
29	GO:0000325: plant-type vacuole	2.96E-02
30	GO:0005874: microtubule	3.00E-02
31	GO:0005774: vacuolar membrane	3.43E-02
32	GO:0031902: late endosome membrane	3.58E-02
33	GO:0005856: cytoskeleton	4.12E-02