Gene: AT3G20250
     

Gene description


TAIR ID: AT3G20250

Short description: pumilio 5

Pathogen responsiveness: -0.41

General responsiveness: 0.47

Orthologous


Rice:

OS08G0519800  

Maize:

GRMZM2G449123  

Wheat: No orthologous gene

GO biological process


3'-UTR-mediated mRNA destabilization, drought recovery, response to salt stress, defense response to virus, response to osmotic stress


GO cellular component


vacuole, cytosol, cytoplasm


GO molecular function


mRNA binding, RNA binding


Protein domain


PfamPF00806, Pumilio-family RNA binding repeat
SMARTSM00025, Pumilio

Metabolic pathway


Not involved in metabolic pathway


KEGG pathway


Not involved in KEGG pathway


Transcriptional regulation


Regulator:
AT4G36990

Target:
none

Protein-protein interaction network


The number of partners (degree) is: 3

click to view PPI network

Differentially expressed condition


15 conditions



SeriesControlTreatmentLog2FCAdj. P value
GSE17500Col, 35S:AFB1, control 0 hCol, 35S:AFB1, PstDC3000 24 h1.621.22E-03
GSE17500Col, WT, control 0 hCol, WT, PstDC3000 24 h2.255.47E-05
GSE17500Col, miR393, control 0 hCol, miR393, PstDC3000 24 h1.531.72E-03
GSE18329Col, wrky72_1, controlCol, wrky72_1, Hpa noco2 96 h2.222.52E-13
GSE18329Col, wrky72_1, controlCol, wrky72_2, Hpa noco2 96 h2.001.36E-12
GSE18978Col, WT, control 24 hCol, WT, PsmES4326 24 h1.771.30E-08
GSE26679Col, WT, GC 0 hCol, WT, GC 36 h1.542.85E-08
GSE26679Col, edr1, GC 0 hCol, edr1, GC 18 h1.533.16E-08
GSE26679Col, edr1, GC 0 hCol, edr1, GC 36 h1.811.05E-09
GSE45212Col, WT, PstDC3000 AvrRpt2 0 hCol, WT, PstDC3000 AvrRpt2 12 h3.142.96E-14
GSE45212Col, WT, PstDC3000 AvrRpt2 0 hCol, WT, PstDC3000 AvrRpt2 8 h2.538.56E-13
GSE45212Col, med14, PstDC3000 AvrRpt2 0 hCol, med14, PstDC3000 AvrRpt2 12 h2.371.52E-12
GSE45212Col, med14, PstDC3000 AvrRpt2 0 hCol, med14, PstDC3000 AvrRpt2 4 h1.771.18E-10
GSE45212Col, med14, PstDC3000 AvrRpt2 0 hCol, med14, PstDC3000 AvrRpt2 8 h2.371.27E-12
GSE9674Ws-4, WT, controlWs-4, WT, Xanthomonas strain Xcc147 90-105 min-1.525.97E-03






Copyright © 2017 Ziding Zhang's Lab - China Agricultural University. All Rights Reserved.