GO Enrichment Analysis of Co-expressed Genes with
AT3G20250
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0019427: acetyl-CoA biosynthetic process from acetate | 0.00E+00 |
| 2 | GO:0010793: regulation of mRNA export from nucleus | 0.00E+00 |
| 3 | GO:0010499: proteasomal ubiquitin-independent protein catabolic process | 0.00E+00 |
| 4 | GO:0051553: flavone biosynthetic process | 0.00E+00 |
| 5 | GO:0010398: xylogalacturonan metabolic process | 0.00E+00 |
| 6 | GO:0072722: response to amitrole | 0.00E+00 |
| 7 | GO:0006216: cytidine catabolic process | 0.00E+00 |
| 8 | GO:2001253: regulation of histone H3-K36 trimethylation | 0.00E+00 |
| 9 | GO:0055114: oxidation-reduction process | 2.87E-06 |
| 10 | GO:0009407: toxin catabolic process | 3.05E-05 |
| 11 | GO:0009620: response to fungus | 1.79E-04 |
| 12 | GO:0042964: thioredoxin reduction | 1.84E-04 |
| 13 | GO:0006680: glucosylceramide catabolic process | 1.84E-04 |
| 14 | GO:0006083: acetate metabolic process | 1.84E-04 |
| 15 | GO:0046686: response to cadmium ion | 2.38E-04 |
| 16 | GO:1902000: homogentisate catabolic process | 4.15E-04 |
| 17 | GO:0033512: L-lysine catabolic process to acetyl-CoA via saccharopine | 4.15E-04 |
| 18 | GO:0051252: regulation of RNA metabolic process | 4.15E-04 |
| 19 | GO:0050684: regulation of mRNA processing | 4.15E-04 |
| 20 | GO:0000162: tryptophan biosynthetic process | 6.59E-04 |
| 21 | GO:0002230: positive regulation of defense response to virus by host | 6.76E-04 |
| 22 | GO:0006556: S-adenosylmethionine biosynthetic process | 6.76E-04 |
| 23 | GO:0032784: regulation of DNA-templated transcription, elongation | 6.76E-04 |
| 24 | GO:0071398: cellular response to fatty acid | 6.76E-04 |
| 25 | GO:0010476: gibberellin mediated signaling pathway | 6.76E-04 |
| 26 | GO:0010325: raffinose family oligosaccharide biosynthetic process | 6.76E-04 |
| 27 | GO:0010272: response to silver ion | 6.76E-04 |
| 28 | GO:0009072: aromatic amino acid family metabolic process | 6.76E-04 |
| 29 | GO:0009636: response to toxic substance | 7.81E-04 |
| 30 | GO:0016998: cell wall macromolecule catabolic process | 8.78E-04 |
| 31 | GO:1902290: positive regulation of defense response to oomycetes | 9.65E-04 |
| 32 | GO:0080024: indolebutyric acid metabolic process | 9.65E-04 |
| 33 | GO:0001676: long-chain fatty acid metabolic process | 9.65E-04 |
| 34 | GO:0070301: cellular response to hydrogen peroxide | 9.65E-04 |
| 35 | GO:0002239: response to oomycetes | 9.65E-04 |
| 36 | GO:0009693: ethylene biosynthetic process | 1.04E-03 |
| 37 | GO:1901002: positive regulation of response to salt stress | 1.28E-03 |
| 38 | GO:0015867: ATP transport | 1.28E-03 |
| 39 | GO:0010188: response to microbial phytotoxin | 1.28E-03 |
| 40 | GO:0009939: positive regulation of gibberellic acid mediated signaling pathway | 1.28E-03 |
| 41 | GO:0048830: adventitious root development | 1.28E-03 |
| 42 | GO:0046283: anthocyanin-containing compound metabolic process | 1.63E-03 |
| 43 | GO:0006564: L-serine biosynthetic process | 1.63E-03 |
| 44 | GO:0006623: protein targeting to vacuole | 1.63E-03 |
| 45 | GO:0010193: response to ozone | 1.74E-03 |
| 46 | GO:0045454: cell redox homeostasis | 1.76E-03 |
| 47 | GO:0009972: cytidine deamination | 2.01E-03 |
| 48 | GO:0009759: indole glucosinolate biosynthetic process | 2.01E-03 |
| 49 | GO:0015866: ADP transport | 2.01E-03 |
| 50 | GO:0015031: protein transport | 2.05E-03 |
| 51 | GO:0051607: defense response to virus | 2.36E-03 |
| 52 | GO:0009751: response to salicylic acid | 2.38E-03 |
| 53 | GO:0009082: branched-chain amino acid biosynthetic process | 2.41E-03 |
| 54 | GO:0009099: valine biosynthetic process | 2.41E-03 |
| 55 | GO:0048444: floral organ morphogenesis | 2.41E-03 |
| 56 | GO:0030643: cellular phosphate ion homeostasis | 2.41E-03 |
| 57 | GO:0008152: metabolic process | 2.82E-03 |
| 58 | GO:0071669: plant-type cell wall organization or biogenesis | 2.83E-03 |
| 59 | GO:0050829: defense response to Gram-negative bacterium | 2.83E-03 |
| 60 | GO:1900057: positive regulation of leaf senescence | 2.83E-03 |
| 61 | GO:0010150: leaf senescence | 3.03E-03 |
| 62 | GO:0006605: protein targeting | 3.28E-03 |
| 63 | GO:0006102: isocitrate metabolic process | 3.28E-03 |
| 64 | GO:0018401: peptidyl-proline hydroxylation to 4-hydroxy-L-proline | 3.28E-03 |
| 65 | GO:0010497: plasmodesmata-mediated intercellular transport | 3.75E-03 |
| 66 | GO:0019430: removal of superoxide radicals | 3.75E-03 |
| 67 | GO:0009097: isoleucine biosynthetic process | 3.75E-03 |
| 68 | GO:0006002: fructose 6-phosphate metabolic process | 3.75E-03 |
| 69 | GO:0010043: response to zinc ion | 3.76E-03 |
| 70 | GO:0009617: response to bacterium | 3.79E-03 |
| 71 | GO:0010112: regulation of systemic acquired resistance | 4.25E-03 |
| 72 | GO:0009056: catabolic process | 4.25E-03 |
| 73 | GO:0009835: fruit ripening | 4.25E-03 |
| 74 | GO:0006099: tricarboxylic acid cycle | 4.30E-03 |
| 75 | GO:0042742: defense response to bacterium | 4.73E-03 |
| 76 | GO:2000280: regulation of root development | 4.76E-03 |
| 77 | GO:1900426: positive regulation of defense response to bacterium | 4.76E-03 |
| 78 | GO:0009098: leucine biosynthetic process | 4.76E-03 |
| 79 | GO:0006979: response to oxidative stress | 4.80E-03 |
| 80 | GO:0006631: fatty acid metabolic process | 4.88E-03 |
| 81 | GO:0042542: response to hydrogen peroxide | 5.09E-03 |
| 82 | GO:0006032: chitin catabolic process | 5.30E-03 |
| 83 | GO:0009688: abscisic acid biosynthetic process | 5.30E-03 |
| 84 | GO:0009641: shade avoidance | 5.30E-03 |
| 85 | GO:0052544: defense response by callose deposition in cell wall | 5.85E-03 |
| 86 | GO:0000272: polysaccharide catabolic process | 5.85E-03 |
| 87 | GO:0009684: indoleacetic acid biosynthetic process | 5.85E-03 |
| 88 | GO:0009682: induced systemic resistance | 5.85E-03 |
| 89 | GO:0006890: retrograde vesicle-mediated transport, Golgi to ER | 6.43E-03 |
| 90 | GO:0071365: cellular response to auxin stimulus | 6.43E-03 |
| 91 | GO:0010102: lateral root morphogenesis | 7.03E-03 |
| 92 | GO:0032436: positive regulation of proteasomal ubiquitin-dependent protein catabolic process | 7.03E-03 |
| 93 | GO:0016192: vesicle-mediated transport | 7.38E-03 |
| 94 | GO:0090351: seedling development | 8.27E-03 |
| 95 | GO:0010053: root epidermal cell differentiation | 8.27E-03 |
| 96 | GO:0007030: Golgi organization | 8.27E-03 |
| 97 | GO:0034976: response to endoplasmic reticulum stress | 8.93E-03 |
| 98 | GO:0006886: intracellular protein transport | 9.06E-03 |
| 99 | GO:0010073: meristem maintenance | 1.03E-02 |
| 100 | GO:0051302: regulation of cell division | 1.03E-02 |
| 101 | GO:0006874: cellular calcium ion homeostasis | 1.03E-02 |
| 102 | GO:0050832: defense response to fungus | 1.08E-02 |
| 103 | GO:0006730: one-carbon metabolic process | 1.17E-02 |
| 104 | GO:0030433: ubiquitin-dependent ERAD pathway | 1.17E-02 |
| 105 | GO:0010227: floral organ abscission | 1.25E-02 |
| 106 | GO:0009306: protein secretion | 1.32E-02 |
| 107 | GO:0009651: response to salt stress | 1.37E-02 |
| 108 | GO:0042147: retrograde transport, endosome to Golgi | 1.40E-02 |
| 109 | GO:0042631: cellular response to water deprivation | 1.48E-02 |
| 110 | GO:0006662: glycerol ether metabolic process | 1.56E-02 |
| 111 | GO:0045489: pectin biosynthetic process | 1.56E-02 |
| 112 | GO:0009851: auxin biosynthetic process | 1.73E-02 |
| 113 | GO:0045490: pectin catabolic process | 1.76E-02 |
| 114 | GO:0002229: defense response to oomycetes | 1.81E-02 |
| 115 | GO:0000302: response to reactive oxygen species | 1.81E-02 |
| 116 | GO:0006891: intra-Golgi vesicle-mediated transport | 1.81E-02 |
| 117 | GO:0006635: fatty acid beta-oxidation | 1.81E-02 |
| 118 | GO:0071281: cellular response to iron ion | 1.99E-02 |
| 119 | GO:1901657: glycosyl compound metabolic process | 1.99E-02 |
| 120 | GO:0006464: cellular protein modification process | 2.07E-02 |
| 121 | GO:0009615: response to virus | 2.35E-02 |
| 122 | GO:0006974: cellular response to DNA damage stimulus | 2.55E-02 |
| 123 | GO:0009627: systemic acquired resistance | 2.55E-02 |
| 124 | GO:0009409: response to cold | 2.64E-02 |
| 125 | GO:0016049: cell growth | 2.74E-02 |
| 126 | GO:0016311: dephosphorylation | 2.74E-02 |
| 127 | GO:0009817: defense response to fungus, incompatible interaction | 2.84E-02 |
| 128 | GO:0009813: flavonoid biosynthetic process | 2.94E-02 |
| 129 | GO:0007568: aging | 3.15E-02 |
| 130 | GO:0045087: innate immune response | 3.36E-02 |
| 131 | GO:0034599: cellular response to oxidative stress | 3.47E-02 |
| 132 | GO:0006839: mitochondrial transport | 3.69E-02 |
| 133 | GO:0010114: response to red light | 4.03E-02 |
| 134 | GO:0051707: response to other organism | 4.03E-02 |
| 135 | GO:0000209: protein polyubiquitination | 4.14E-02 |
| 136 | GO:0009965: leaf morphogenesis | 4.38E-02 |
| 137 | GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process | 4.61E-02 |
| 138 | GO:0031347: regulation of defense response | 4.61E-02 |
| 139 | GO:0009846: pollen germination | 4.73E-02 |
| 140 | GO:0006629: lipid metabolic process | 4.97E-02 |
| 141 | GO:0009809: lignin biosynthetic process | 4.98E-02 |
| 142 | GO:0009736: cytokinin-activated signaling pathway | 4.98E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0047844: deoxycytidine deaminase activity | 0.00E+00 |
| 2 | GO:0016504: peptidase activator activity | 0.00E+00 |
| 3 | GO:0102983: xylogalacturonan beta-1,3-xylosyltransferase activity | 0.00E+00 |
| 4 | GO:0016229: steroid dehydrogenase activity | 0.00E+00 |
| 5 | GO:0016034: maleylacetoacetate isomerase activity | 0.00E+00 |
| 6 | GO:0033759: flavone synthase activity | 0.00E+00 |
| 7 | GO:0070577: lysine-acetylated histone binding | 0.00E+00 |
| 8 | GO:0070401: NADP+ binding | 0.00E+00 |
| 9 | GO:0004364: glutathione transferase activity | 6.05E-05 |
| 10 | GO:0008320: protein transmembrane transporter activity | 1.13E-04 |
| 11 | GO:0043295: glutathione binding | 1.13E-04 |
| 12 | GO:0004033: aldo-keto reductase (NADP) activity | 1.45E-04 |
| 13 | GO:0004348: glucosylceramidase activity | 1.84E-04 |
| 14 | GO:2001147: camalexin binding | 1.84E-04 |
| 15 | GO:0004149: dihydrolipoyllysine-residue succinyltransferase activity | 1.84E-04 |
| 16 | GO:0004649: poly(ADP-ribose) glycohydrolase activity | 1.84E-04 |
| 17 | GO:0010179: IAA-Ala conjugate hydrolase activity | 1.84E-04 |
| 18 | GO:2001227: quercitrin binding | 1.84E-04 |
| 19 | GO:0003987: acetate-CoA ligase activity | 1.84E-04 |
| 20 | GO:0004425: indole-3-glycerol-phosphate synthase activity | 1.84E-04 |
| 21 | GO:0008428: ribonuclease inhibitor activity | 4.15E-04 |
| 22 | GO:0047443: 4-hydroxy-4-methyl-2-oxoglutarate aldolase activity | 4.15E-04 |
| 23 | GO:0010331: gibberellin binding | 4.15E-04 |
| 24 | GO:0004617: phosphoglycerate dehydrogenase activity | 4.15E-04 |
| 25 | GO:0003955: NAD(P)H dehydrogenase (quinone) activity | 6.76E-04 |
| 26 | GO:0004478: methionine adenosyltransferase activity | 6.76E-04 |
| 27 | GO:0031418: L-ascorbic acid binding | 7.29E-04 |
| 28 | GO:0004449: isocitrate dehydrogenase (NAD+) activity | 9.65E-04 |
| 29 | GO:0008106: alcohol dehydrogenase (NADP+) activity | 9.65E-04 |
| 30 | GO:0010178: IAA-amino acid conjugate hydrolase activity | 9.65E-04 |
| 31 | GO:0016656: monodehydroascorbate reductase (NADH) activity | 9.65E-04 |
| 32 | GO:0052656: L-isoleucine transaminase activity | 9.65E-04 |
| 33 | GO:0052654: L-leucine transaminase activity | 9.65E-04 |
| 34 | GO:0052655: L-valine transaminase activity | 9.65E-04 |
| 35 | GO:0004601: peroxidase activity | 9.74E-04 |
| 36 | GO:0070628: proteasome binding | 1.28E-03 |
| 37 | GO:0004031: aldehyde oxidase activity | 1.28E-03 |
| 38 | GO:0050302: indole-3-acetaldehyde oxidase activity | 1.28E-03 |
| 39 | GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor | 1.28E-03 |
| 40 | GO:0004084: branched-chain-amino-acid transaminase activity | 1.28E-03 |
| 41 | GO:0004791: thioredoxin-disulfide reductase activity | 1.52E-03 |
| 42 | GO:0015035: protein disulfide oxidoreductase activity | 1.57E-03 |
| 43 | GO:0008948: oxaloacetate decarboxylase activity | 1.63E-03 |
| 44 | GO:0016208: AMP binding | 2.01E-03 |
| 45 | GO:0035252: UDP-xylosyltransferase activity | 2.01E-03 |
| 46 | GO:0008237: metallopeptidase activity | 2.23E-03 |
| 47 | GO:0102391: decanoate--CoA ligase activity | 2.41E-03 |
| 48 | GO:0004602: glutathione peroxidase activity | 2.41E-03 |
| 49 | GO:0005347: ATP transmembrane transporter activity | 2.41E-03 |
| 50 | GO:0004656: procollagen-proline 4-dioxygenase activity | 2.41E-03 |
| 51 | GO:0015217: ADP transmembrane transporter activity | 2.41E-03 |
| 52 | GO:0004126: cytidine deaminase activity | 2.41E-03 |
| 53 | GO:0004467: long-chain fatty acid-CoA ligase activity | 2.83E-03 |
| 54 | GO:0003872: 6-phosphofructokinase activity | 2.83E-03 |
| 55 | GO:0004806: triglyceride lipase activity | 2.94E-03 |
| 56 | GO:0052747: sinapyl alcohol dehydrogenase activity | 3.28E-03 |
| 57 | GO:0004714: transmembrane receptor protein tyrosine kinase activity | 3.28E-03 |
| 58 | GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors | 4.12E-03 |
| 59 | GO:0009815: 1-aminocyclopropane-1-carboxylate oxidase activity | 4.25E-03 |
| 60 | GO:0004568: chitinase activity | 5.30E-03 |
| 61 | GO:0008794: arsenate reductase (glutaredoxin) activity | 5.85E-03 |
| 62 | GO:0005198: structural molecule activity | 5.95E-03 |
| 63 | GO:0045551: cinnamyl-alcohol dehydrogenase activity | 6.43E-03 |
| 64 | GO:0031624: ubiquitin conjugating enzyme binding | 7.64E-03 |
| 65 | GO:0008061: chitin binding | 8.27E-03 |
| 66 | GO:0003712: transcription cofactor activity | 8.27E-03 |
| 67 | GO:0005217: intracellular ligand-gated ion channel activity | 8.27E-03 |
| 68 | GO:0004970: ionotropic glutamate receptor activity | 8.27E-03 |
| 69 | GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen | 1.31E-02 |
| 70 | GO:0003756: protein disulfide isomerase activity | 1.32E-02 |
| 71 | GO:0047134: protein-disulfide reductase activity | 1.40E-02 |
| 72 | GO:0004527: exonuclease activity | 1.56E-02 |
| 73 | GO:0001085: RNA polymerase II transcription factor binding | 1.56E-02 |
| 74 | GO:0010181: FMN binding | 1.64E-02 |
| 75 | GO:0005506: iron ion binding | 1.65E-02 |
| 76 | GO:0004518: nuclease activity | 1.90E-02 |
| 77 | GO:0008194: UDP-glycosyltransferase activity | 1.98E-02 |
| 78 | GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor | 1.99E-02 |
| 79 | GO:0016791: phosphatase activity | 2.07E-02 |
| 80 | GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity | 2.17E-02 |
| 81 | GO:0016722: oxidoreductase activity, oxidizing metal ions | 2.17E-02 |
| 82 | GO:0016597: amino acid binding | 2.26E-02 |
| 83 | GO:0046872: metal ion binding | 2.55E-02 |
| 84 | GO:0102483: scopolin beta-glucosidase activity | 2.64E-02 |
| 85 | GO:0016740: transferase activity | 3.01E-02 |
| 86 | GO:0030145: manganese ion binding | 3.15E-02 |
| 87 | GO:0001228: transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding | 3.15E-02 |
| 88 | GO:0016614: oxidoreductase activity, acting on CH-OH group of donors | 3.15E-02 |
| 89 | GO:0050660: flavin adenine dinucleotide binding | 3.16E-02 |
| 90 | GO:0003993: acid phosphatase activity | 3.47E-02 |
| 91 | GO:0008422: beta-glucosidase activity | 3.58E-02 |
| 92 | GO:0004712: protein serine/threonine/tyrosine kinase activity | 3.58E-02 |
| 93 | GO:0051537: 2 iron, 2 sulfur cluster binding | 4.26E-02 |
| 94 | GO:0051287: NAD binding | 4.61E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0005829: cytosol | 2.58E-05 |
| 2 | GO:0005783: endoplasmic reticulum | 3.85E-05 |
| 3 | GO:0005789: endoplasmic reticulum membrane | 4.71E-05 |
| 4 | GO:0045252: oxoglutarate dehydrogenase complex | 1.84E-04 |
| 5 | GO:0005794: Golgi apparatus | 2.08E-04 |
| 6 | GO:0005788: endoplasmic reticulum lumen | 2.72E-04 |
| 7 | GO:0017119: Golgi transport complex | 3.10E-04 |
| 8 | GO:0030134: ER to Golgi transport vesicle | 4.15E-04 |
| 9 | GO:0030658: transport vesicle membrane | 9.65E-04 |
| 10 | GO:0005945: 6-phosphofructokinase complex | 1.63E-03 |
| 11 | GO:0005801: cis-Golgi network | 2.41E-03 |
| 12 | GO:0030173: integral component of Golgi membrane | 2.41E-03 |
| 13 | GO:0005886: plasma membrane | 2.49E-03 |
| 14 | GO:0033116: endoplasmic reticulum-Golgi intermediate compartment membrane | 2.83E-03 |
| 15 | GO:0009986: cell surface | 2.83E-03 |
| 16 | GO:0005802: trans-Golgi network | 3.14E-03 |
| 17 | GO:0009514: glyoxysome | 3.75E-03 |
| 18 | GO:0005779: integral component of peroxisomal membrane | 3.75E-03 |
| 19 | GO:0005768: endosome | 3.93E-03 |
| 20 | GO:0031901: early endosome membrane | 4.25E-03 |
| 21 | GO:0030665: clathrin-coated vesicle membrane | 4.76E-03 |
| 22 | GO:0005737: cytoplasm | 5.73E-03 |
| 23 | GO:0005839: proteasome core complex | 1.10E-02 |
| 24 | GO:0009506: plasmodesma | 1.68E-02 |
| 25 | GO:0031965: nuclear membrane | 1.73E-02 |
| 26 | GO:0019898: extrinsic component of membrane | 1.73E-02 |
| 27 | GO:0016592: mediator complex | 1.90E-02 |
| 28 | GO:0071944: cell periphery | 1.99E-02 |
| 29 | GO:0032580: Golgi cisterna membrane | 2.07E-02 |
| 30 | GO:0016020: membrane | 2.08E-02 |
| 31 | GO:0009505: plant-type cell wall | 2.36E-02 |
| 32 | GO:0005667: transcription factor complex | 2.55E-02 |
| 33 | GO:0000139: Golgi membrane | 2.64E-02 |
| 34 | GO:0000151: ubiquitin ligase complex | 2.84E-02 |
| 35 | GO:0031902: late endosome membrane | 3.80E-02 |
| 36 | GO:0005774: vacuolar membrane | 3.95E-02 |
| 37 | GO:0009570: chloroplast stroma | 4.76E-02 |
| 38 | GO:0005622: intracellular | 4.78E-02 |