gene detail

Gene description

TAIR ID: AT3G02150

Short description: plastid transcription factor 1

Pathogen responsiveness: -0.43

General responsiveness: 1.05

Orthologous

Rice:

OS05G0513100

Maize: No orthologous gene

Wheat: No orthologous gene

GO biological process

leaf development, transcription, DNA-templated, leaf morphogenesis, regulation of transcription, regulation of defense response, cell differentiation, positive regulation of development, heterochronic

GO cellular component

nucleus, chloroplast

GO molecular function

protein binding, transcription factor activity, sequence-specific DNA binding, DNA binding

Protein domain

Pfam	PF03634, TCP family transcription factor

Metabolic pathway

Not involved in metabolic pathway

KEGG pathway

Not involved in KEGG pathway

Transcriptional regulation

Regulator:
AT5G13790, AT3G14230, AT4G18770, AT5G11260, AT1G24260, AT5G61850, AT2G43010

Target:
none

Protein-protein interaction network

The number of partners (degree) is: 93 (Top5%)

click to view PPI network

Coexpression network

GSE45212_WT_PSTDC3000_AVRRPT2  view
GSE56094_WT_HRPA-  view
GSE5686_WT_GO  view
GSE56094_WT_PSTDC3000  view
GSE45212_MED14_PSTDC3000_AVRRPT2  view

Differentially expressed condition

15 conditions

Series	Control	Treatment	Log₂FC	Adj. P value
GSE12856	Col, WT, control	Col, WT, Bg h	1.51	8.68E-07
GSE17500	Col, WT, control 0 h	Col, WT, PstDC3000 24 h	1.63	9.73E-05
GSE18978	Col, WT, control 24 h	Col, WT, PsmES4326 24 h	2.64	6.35E-08
GSE45212	Col, WT, PstDC3000 AvrRpt2 0 h	Col, WT, PstDC3000 AvrRpt2 12 h	1.67	7.84E-11
GSE45212	Col, WT, PstDC3000 AvrRpt2 0 h	Col, WT, PstDC3000 AvrRpt2 4 h	1.68	2.54E-10
GSE45212	Col, WT, PstDC3000 AvrRpt2 0 h	Col, WT, PstDC3000 AvrRpt2 8 h	1.68	9.25E-11
GSE45212	Col, med14, PstDC3000 AvrRpt2 0 h	Col, med14, PstDC3000 AvrRpt2 12 h	1.50	4.05E-10
GSE45212	Col, med14, PstDC3000 AvrRpt2 0 h	Col, med14, PstDC3000 AvrRpt2 4 h	1.86	2.08E-11
GSE45212	Col, med14, PstDC3000 AvrRpt2 0 h	Col, med14, PstDC3000 AvrRpt2 8 h	2.27	8.30E-13
GSE45214	Col, med16, PstDC3000 AvrRpt2 0 h	Col, med16, PstDC3000 AvrRpt2 4 h	1.79	2.37E-11
GSE5520	Col, WT, control 24 h	Col, WT, PstDC3000 24 h	1.97	3.48E-03
GSE5520	Col, WT, control 7 h	Col, WT, PstDC3000 7 h	1.84	4.24E-04
GSE56094	Col, WT, control 10 h	Col, WT, PstDC3000 10 h	1.87	1.66E-16
GSE56094	Col, WT, control 13 h	Col, WT, PstDC3000 13 h	1.71	1.70E-14
GSE6176	Col, WT, control 12 h	Col, WT, PstDC3000 12 h	1.59	4.63E-03