co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G70420

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:1903428: positive regulation of reactive oxygen species biosynthetic process	0.00E+00
2	GO:0070584: mitochondrion morphogenesis	0.00E+00
3	GO:1901401: regulation of tetrapyrrole metabolic process	0.00E+00
4	GO:0015970: guanosine tetraphosphate biosynthetic process	0.00E+00
5	GO:0046677: response to antibiotic	0.00E+00
6	GO:0090279: regulation of calcium ion import	0.00E+00
7	GO:0030644: cellular chloride ion homeostasis	0.00E+00
8	GO:0015717: triose phosphate transport	0.00E+00
9	GO:1903508: positive regulation of nucleic acid-templated transcription	0.00E+00
10	GO:0071474: cellular hyperosmotic response	0.00E+00
11	GO:0009768: photosynthesis, light harvesting in photosystem I	4.64E-19
12	GO:0015979: photosynthesis	2.45E-18
13	GO:0018298: protein-chromophore linkage	1.72E-13
14	GO:0009645: response to low light intensity stimulus	4.02E-11
15	GO:0010114: response to red light	3.83E-09
16	GO:0009644: response to high light intensity	5.14E-09
17	GO:0010218: response to far red light	3.77E-08
18	GO:0015995: chlorophyll biosynthetic process	7.74E-07
19	GO:0009769: photosynthesis, light harvesting in photosystem II	1.62E-06
20	GO:0009637: response to blue light	1.93E-06
21	GO:0009409: response to cold	5.25E-06
22	GO:0009416: response to light stimulus	7.17E-06
23	GO:0009765: photosynthesis, light harvesting	2.66E-05
24	GO:0007623: circadian rhythm	6.80E-05
25	GO:0010196: nonphotochemical quenching	1.18E-04
26	GO:0055114: oxidation-reduction process	1.33E-04
27	GO:0080065: 4-alpha-methyl-delta7-sterol oxidation	1.88E-04
28	GO:0018002: N-terminal peptidyl-glutamic acid acetylation	1.88E-04
29	GO:0006824: cobalt ion transport	1.88E-04
30	GO:0006475: internal protein amino acid acetylation	1.88E-04
31	GO:0006474: N-terminal protein amino acid acetylation	1.88E-04
32	GO:0017198: N-terminal peptidyl-serine acetylation	1.88E-04
33	GO:0051262: protein tetramerization	4.24E-04
34	GO:0006883: cellular sodium ion homeostasis	4.24E-04
35	GO:0051170: nuclear import	4.24E-04
36	GO:1902884: positive regulation of response to oxidative stress	4.24E-04
37	GO:0034755: iron ion transmembrane transport	4.24E-04
38	GO:0050992: dimethylallyl diphosphate biosynthetic process	4.24E-04
39	GO:1902448: positive regulation of shade avoidance	6.92E-04
40	GO:0006598: polyamine catabolic process	6.92E-04
41	GO:1901562: response to paraquat	6.92E-04
42	GO:0035436: triose phosphate transmembrane transport	6.92E-04
43	GO:0009640: photomorphogenesis	7.03E-04
44	GO:0048511: rhythmic process	9.07E-04
45	GO:0009269: response to desiccation	9.07E-04
46	GO:0044211: CTP salvage	9.86E-04
47	GO:0031936: negative regulation of chromatin silencing	9.86E-04
48	GO:0010017: red or far-red light signaling pathway	9.89E-04
49	GO:2000306: positive regulation of photomorphogenesis	1.31E-03
50	GO:0010600: regulation of auxin biosynthetic process	1.31E-03
51	GO:1901002: positive regulation of response to salt stress	1.31E-03
52	GO:0015846: polyamine transport	1.31E-03
53	GO:0030104: water homeostasis	1.31E-03
54	GO:0015713: phosphoglycerate transport	1.31E-03
55	GO:0044206: UMP salvage	1.31E-03
56	GO:0042938: dipeptide transport	1.31E-03
57	GO:0016123: xanthophyll biosynthetic process	1.66E-03
58	GO:0043097: pyrimidine nucleoside salvage	1.66E-03
59	GO:0042549: photosystem II stabilization	2.05E-03
60	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	2.05E-03
61	GO:0045962: positive regulation of development, heterochronic	2.05E-03
62	GO:0006206: pyrimidine nucleobase metabolic process	2.05E-03
63	GO:0000060: protein import into nucleus, translocation	2.05E-03
64	GO:0009635: response to herbicide	2.05E-03
65	GO:0009643: photosynthetic acclimation	2.05E-03
66	GO:0010077: maintenance of inflorescence meristem identity	2.46E-03
67	GO:0071470: cellular response to osmotic stress	2.46E-03
68	GO:0010244: response to low fluence blue light stimulus by blue low-fluence system	2.46E-03
69	GO:0010189: vitamin E biosynthetic process	2.46E-03
70	GO:0016126: sterol biosynthetic process	2.58E-03
71	GO:0010161: red light signaling pathway	2.90E-03
72	GO:0080111: DNA demethylation	2.90E-03
73	GO:0010928: regulation of auxin mediated signaling pathway	3.36E-03
74	GO:0009642: response to light intensity	3.36E-03
75	GO:0009704: de-etiolation	3.36E-03
76	GO:0000160: phosphorelay signal transduction system	3.53E-03
77	GO:0010099: regulation of photomorphogenesis	3.84E-03
78	GO:0007186: G-protein coupled receptor signaling pathway	3.84E-03
79	GO:0048507: meristem development	4.35E-03
80	GO:0010206: photosystem II repair	4.35E-03
81	GO:0090333: regulation of stomatal closure	4.35E-03
82	GO:0034599: cellular response to oxidative stress	4.45E-03
83	GO:1900865: chloroplast RNA modification	4.87E-03
84	GO:0042761: very long-chain fatty acid biosynthetic process	4.87E-03
85	GO:0008356: asymmetric cell division	4.87E-03
86	GO:0009735: response to cytokinin	5.34E-03
87	GO:0009641: shade avoidance	5.42E-03
88	GO:0010162: seed dormancy process	5.42E-03
89	GO:0019538: protein metabolic process	5.42E-03
90	GO:0009688: abscisic acid biosynthetic process	5.42E-03
91	GO:0030148: sphingolipid biosynthetic process	5.99E-03
92	GO:0046856: phosphatidylinositol dephosphorylation	5.99E-03
93	GO:0043085: positive regulation of catalytic activity	5.99E-03
94	GO:0018119: peptidyl-cysteine S-nitrosylation	5.99E-03
95	GO:0015706: nitrate transport	6.58E-03
96	GO:0009723: response to ethylene	6.61E-03
97	GO:0042538: hyperosmotic salinity response	6.88E-03
98	GO:0050826: response to freezing	7.19E-03
99	GO:0018107: peptidyl-threonine phosphorylation	7.19E-03
100	GO:0009718: anthocyanin-containing compound biosynthetic process	7.19E-03
101	GO:0009767: photosynthetic electron transport chain	7.19E-03
102	GO:0009266: response to temperature stimulus	7.82E-03
103	GO:0010207: photosystem II assembly	7.82E-03
104	GO:0044550: secondary metabolite biosynthetic process	8.04E-03
105	GO:0009909: regulation of flower development	8.18E-03
106	GO:0090351: seedling development	8.47E-03
107	GO:0006636: unsaturated fatty acid biosynthetic process	9.14E-03
108	GO:0006289: nucleotide-excision repair	9.83E-03
109	GO:0006874: cellular calcium ion homeostasis	1.05E-02
110	GO:0010431: seed maturation	1.13E-02
111	GO:0061077: chaperone-mediated protein folding	1.13E-02
112	GO:0003333: amino acid transmembrane transport	1.13E-02
113	GO:0006629: lipid metabolic process	1.19E-02
114	GO:0071215: cellular response to abscisic acid stimulus	1.28E-02
115	GO:0045492: xylan biosynthetic process	1.35E-02
116	GO:0006351: transcription, DNA-templated	1.42E-02
117	GO:0070417: cellular response to cold	1.43E-02
118	GO:0009651: response to salt stress	1.46E-02
119	GO:0010182: sugar mediated signaling pathway	1.60E-02
120	GO:0010305: leaf vascular tissue pattern formation	1.60E-02
121	GO:0006662: glycerol ether metabolic process	1.60E-02
122	GO:0006814: sodium ion transport	1.68E-02
123	GO:0009414: response to water deprivation	1.71E-02
124	GO:0048510: regulation of timing of transition from vegetative to reproductive phase	1.85E-02
125	GO:0010193: response to ozone	1.85E-02
126	GO:1901657: glycosyl compound metabolic process	2.03E-02
127	GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process	2.04E-02
128	GO:0009908: flower development	2.16E-02
129	GO:0010286: heat acclimation	2.22E-02
130	GO:0009911: positive regulation of flower development	2.41E-02
131	GO:0010029: regulation of seed germination	2.51E-02
132	GO:0045944: positive regulation of transcription from RNA polymerase II promoter	2.62E-02
133	GO:0048573: photoperiodism, flowering	2.71E-02
134	GO:0016311: dephosphorylation	2.81E-02
135	GO:0009658: chloroplast organization	2.83E-02
136	GO:0006355: regulation of transcription, DNA-templated	2.98E-02
137	GO:0006970: response to osmotic stress	3.04E-02
138	GO:0006811: ion transport	3.12E-02
139	GO:0007568: aging	3.23E-02
140	GO:0009910: negative regulation of flower development	3.23E-02
141	GO:0009631: cold acclimation	3.23E-02
142	GO:0010119: regulation of stomatal movement	3.23E-02
143	GO:0005975: carbohydrate metabolic process	3.28E-02
144	GO:0006865: amino acid transport	3.34E-02
145	GO:0016051: carbohydrate biosynthetic process	3.45E-02
146	GO:0080167: response to karrikin	3.50E-02
147	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	3.62E-02
148	GO:0051707: response to other organism	4.13E-02
149	GO:0045454: cell redox homeostasis	4.18E-02
150	GO:0045892: negative regulation of transcription, DNA-templated	4.25E-02
151	GO:0009965: leaf morphogenesis	4.48E-02
152	GO:0000165: MAPK cascade	4.73E-02
153	GO:0006812: cation transport	4.85E-02
154	GO:0032259: methylation	4.93E-02

Rank	GO Term	Adjusted P value
1	GO:0048529: magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase activity	0.00E+00
2	GO:0080081: 4-methylumbelliferyl-beta-D-glucopyranoside beta-glucosidase activity	0.00E+00
3	GO:0047668: amygdalin beta-glucosidase activity	0.00E+00
4	GO:0080083: beta-gentiobiose beta-glucosidase activity	0.00E+00
5	GO:0009540: zeaxanthin epoxidase [overall] activity	0.00E+00
6	GO:0030504: inorganic diphosphate transmembrane transporter activity	0.00E+00
7	GO:0004567: beta-mannosidase activity	0.00E+00
8	GO:0045550: geranylgeranyl reductase activity	0.00E+00
9	GO:0080082: esculin beta-glucosidase activity	0.00E+00
10	GO:0051745: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase activity	0.00E+00
11	GO:0015038: glutathione disulfide oxidoreductase activity	0.00E+00
12	GO:0031409: pigment binding	2.75E-17
13	GO:0016168: chlorophyll binding	6.01E-14
14	GO:0046872: metal ion binding	1.30E-05
15	GO:0004462: lactoylglutathione lyase activity	6.36E-05
16	GO:0016901: oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor	1.88E-04
17	GO:0005227: calcium activated cation channel activity	1.88E-04
18	GO:0080079: cellobiose glucosidase activity	1.88E-04
19	GO:1990189: peptide-serine-N-acetyltransferase activity	1.88E-04
20	GO:0047066: phospholipid-hydroperoxide glutathione peroxidase activity	1.88E-04
21	GO:0052631: sphingolipid delta-8 desaturase activity	1.88E-04
22	GO:1990190: peptide-glutamate-N-acetyltransferase activity	1.88E-04
23	GO:0046429: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity	1.88E-04
24	GO:0080045: quercetin 3'-O-glucosyltransferase activity	4.24E-04
25	GO:0016868: intramolecular transferase activity, phosphotransferases	4.24E-04
26	GO:0016630: protochlorophyllide reductase activity	4.24E-04
27	GO:0019172: glyoxalase III activity	4.24E-04
28	GO:0008728: GTP diphosphokinase activity	4.24E-04
29	GO:0071917: triose-phosphate transmembrane transporter activity	6.92E-04
30	GO:0046592: polyamine oxidase activity	6.92E-04
31	GO:0004180: carboxypeptidase activity	6.92E-04
32	GO:0010277: chlorophyllide a oxygenase [overall] activity	6.92E-04
33	GO:0016805: dipeptidase activity	6.92E-04
34	GO:0000254: C-4 methylsterol oxidase activity	9.86E-04
35	GO:0015203: polyamine transmembrane transporter activity	9.86E-04
36	GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor	9.86E-04
37	GO:0005515: protein binding	1.14E-03
38	GO:0015120: phosphoglycerate transmembrane transporter activity	1.31E-03
39	GO:0004845: uracil phosphoribosyltransferase activity	1.31E-03
40	GO:0042936: dipeptide transporter activity	1.31E-03
41	GO:0004506: squalene monooxygenase activity	1.31E-03
42	GO:0070628: proteasome binding	1.31E-03
43	GO:0004930: G-protein coupled receptor activity	1.31E-03
44	GO:0016702: oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen	1.66E-03
45	GO:0051538: 3 iron, 4 sulfur cluster binding	1.66E-03
46	GO:0000156: phosphorelay response regulator activity	2.04E-03
47	GO:0080046: quercetin 4'-O-glucosyltransferase activity	2.05E-03
48	GO:0031593: polyubiquitin binding	2.05E-03
49	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	2.17E-03
50	GO:0005261: cation channel activity	2.46E-03
51	GO:0004849: uridine kinase activity	2.46E-03
52	GO:0004602: glutathione peroxidase activity	2.46E-03
53	GO:0015297: antiporter activity	2.98E-03
54	GO:0004564: beta-fructofuranosidase activity	3.36E-03
55	GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water	3.84E-03
56	GO:0071949: FAD binding	4.35E-03
57	GO:0000989: transcription factor activity, transcription factor binding	4.35E-03
58	GO:0003993: acid phosphatase activity	4.45E-03
59	GO:0004575: sucrose alpha-glucosidase activity	4.87E-03
60	GO:0005381: iron ion transmembrane transporter activity	4.87E-03
61	GO:0015174: basic amino acid transmembrane transporter activity	4.87E-03
62	GO:0005506: iron ion binding	4.88E-03
63	GO:0016308: 1-phosphatidylinositol-4-phosphate 5-kinase activity	5.42E-03
64	GO:0008047: enzyme activator activity	5.42E-03
65	GO:0004864: protein phosphatase inhibitor activity	5.42E-03
66	GO:0051537: 2 iron, 2 sulfur cluster binding	5.93E-03
67	GO:0044183: protein binding involved in protein folding	5.99E-03
68	GO:0047372: acylglycerol lipase activity	5.99E-03
69	GO:0015293: symporter activity	6.15E-03
70	GO:0004439: phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity	6.58E-03
71	GO:0004022: alcohol dehydrogenase (NAD) activity	7.19E-03
72	GO:0005315: inorganic phosphate transmembrane transporter activity	7.19E-03
73	GO:0008131: primary amine oxidase activity	7.82E-03
74	GO:0004190: aspartic-type endopeptidase activity	8.47E-03
75	GO:0003712: transcription cofactor activity	8.47E-03
76	GO:0005217: intracellular ligand-gated ion channel activity	8.47E-03
77	GO:0004970: ionotropic glutamate receptor activity	8.47E-03
78	GO:0043130: ubiquitin binding	9.83E-03
79	GO:0008134: transcription factor binding	9.83E-03
80	GO:0005216: ion channel activity	1.05E-02
81	GO:0015035: protein disulfide oxidoreductase activity	1.08E-02
82	GO:0008514: organic anion transmembrane transporter activity	1.35E-02
83	GO:0047134: protein-disulfide reductase activity	1.43E-02
84	GO:0016829: lyase activity	1.43E-02
85	GO:0008536: Ran GTPase binding	1.60E-02
86	GO:0008080: N-acetyltransferase activity	1.60E-02
87	GO:0004791: thioredoxin-disulfide reductase activity	1.68E-02
88	GO:0048038: quinone binding	1.85E-02
89	GO:0016787: hydrolase activity	1.88E-02
90	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	2.03E-02
91	GO:0005215: transporter activity	2.06E-02
92	GO:0003684: damaged DNA binding	2.13E-02
93	GO:0008375: acetylglucosaminyltransferase activity	2.61E-02
94	GO:0102483: scopolin beta-glucosidase activity	2.71E-02
95	GO:0008168: methyltransferase activity	2.72E-02
96	GO:0003682: chromatin binding	2.99E-02
97	GO:0004497: monooxygenase activity	3.50E-02
98	GO:0008422: beta-glucosidase activity	3.67E-02
99	GO:0042393: histone binding	3.78E-02
100	GO:0005198: structural molecule activity	4.48E-02
101	GO:0016709: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen	4.52E-02
102	GO:0003700: transcription factor activity, sequence-specific DNA binding	4.57E-02

Rank	GO Term	Adjusted P value
1	GO:0009783: photosystem II antenna complex	0.00E+00
2	GO:0005943: phosphatidylinositol 3-kinase complex, class IA	0.00E+00
3	GO:0009534: chloroplast thylakoid	2.32E-20
4	GO:0009535: chloroplast thylakoid membrane	1.03E-19
5	GO:0009522: photosystem I	2.79E-17
6	GO:0009941: chloroplast envelope	3.39E-16
7	GO:0010287: plastoglobule	6.97E-14
8	GO:0009579: thylakoid	1.37E-13
9	GO:0030076: light-harvesting complex	4.84E-13
10	GO:0009507: chloroplast	7.23E-12
11	GO:0009523: photosystem II	2.59E-09
12	GO:0016021: integral component of membrane	9.27E-08
13	GO:0009517: PSII associated light-harvesting complex II	1.26E-07
14	GO:0042651: thylakoid membrane	4.69E-05
15	GO:0009538: photosystem I reaction center	1.51E-04
16	GO:0031415: NatA complex	4.24E-04
17	GO:0030095: chloroplast photosystem II	5.47E-04
18	GO:0016020: membrane	7.03E-04
19	GO:0009570: chloroplast stroma	1.16E-03
20	GO:0009898: cytoplasmic side of plasma membrane	1.31E-03
21	GO:0030660: Golgi-associated vesicle membrane	1.31E-03
22	GO:0071556: integral component of lumenal side of endoplasmic reticulum membrane	1.31E-03
23	GO:0031969: chloroplast membrane	1.41E-03
24	GO:0009543: chloroplast thylakoid lumen	2.10E-03
25	GO:0009533: chloroplast stromal thylakoid	2.90E-03
26	GO:0071458: integral component of cytoplasmic side of endoplasmic reticulum membrane	3.36E-03
27	GO:0010494: cytoplasmic stress granule	4.35E-03
28	GO:0031977: thylakoid lumen	5.05E-03
29	GO:0005765: lysosomal membrane	5.99E-03
30	GO:0009706: chloroplast inner membrane	1.05E-02
31	GO:0009654: photosystem II oxygen evolving complex	1.05E-02
32	GO:0005623: cell	1.36E-02
33	GO:0019898: extrinsic component of membrane	1.77E-02
34	GO:0000932: P-body	2.41E-02
35	GO:0009707: chloroplast outer membrane	2.91E-02
36	GO:0005789: endoplasmic reticulum membrane	3.32E-02
37	GO:0031966: mitochondrial membrane	4.85E-02