gene detail

Gene description

TAIR ID: AT1G53750

Short description: regulatory particle triple-A 1A

Pathogen responsiveness: -1.55

General responsiveness: -1.94

Orthologous

Rice:

OS06G0192600 OS02G0205300 OS02G0325100 OS07G0691800 OS06G0173100

Maize:

GRMZM2G110185 GRMZM2G181359

Wheat:

TA.4270.1.S1_AT

GO biological process

positive regulation of RNA polymerase II transcriptional preinitiation complex assembly, ubiquitin-dependent ERAD pathway, ubiquitin-dependent protein catabolic process

GO cellular component

cytosolic proteasome complex, proteasome regulatory particle, base subcomplex, nuclear proteasome complex, nucleus, cytosol, plasma membrane

GO molecular function

proteasome-activating ATPase activity, TBP-class protein binding, ATP binding, ATPase activity

Protein domain

Pfam	PF00004, ATPase family associated with various cellular activities (AAA)
SMART	SM00382, AAA

Metabolic pathway

Not involved in metabolic pathway

KEGG pathway

PATH:ath03050: Proteasome

Transcriptional regulation

Regulator:
AT5G13790, AT4G36990

Target:
none

Protein-protein interaction network

The number of partners (degree) is: 3

click to view PPI network

Coexpression network

GSE45212_WT_PSTDC3000_AVRRPT2  view
GSE56094_WT_HRPA-  view
GSE13739_WT_GO  view
GSE13739_EDS16_GO  view
GSE5686_WT_GO  view
GSE56094_WT_PSTDC3000  view
GSE45212_MED14_PSTDC3000_AVRRPT2  view
GSE26679_EDR1_GC  view

Differentially expressed condition

4 conditions

Series	Control	Treatment	Log₂FC	Adj. P value
GSE18978	Col, WT, control 24 h	Col, WT, PsmES4326 24 h	1.90	1.65E-10
GSE45212	Col, WT, PstDC3000 AvrRpt2 0 h	Col, WT, PstDC3000 AvrRpt2 12 h	1.81	1.30E-13
GSE45212	Col, med14, PstDC3000 AvrRpt2 0 h	Col, med14, PstDC3000 AvrRpt2 12 h	2.03	2.91E-14
GSE45212	Col, med14, PstDC3000 AvrRpt2 0 h	Col, med14, PstDC3000 AvrRpt2 8 h	1.94	4.65E-14