co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G53750

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0009991: response to extracellular stimulus	0.00E+00
2	GO:0010111: glyoxysome organization	0.00E+00
3	GO:0006858: extracellular transport	0.00E+00
4	GO:1901799: negative regulation of proteasomal protein catabolic process	0.00E+00
5	GO:0051603: proteolysis involved in cellular protein catabolic process	5.47E-06
6	GO:0009867: jasmonic acid mediated signaling pathway	5.50E-05
7	GO:0000303: response to superoxide	5.79E-05
8	GO:0080173: male-female gamete recognition during double fertilization	5.79E-05
9	GO:0034214: protein hexamerization	5.79E-05
10	GO:0010265: SCF complex assembly	5.79E-05
11	GO:0009723: response to ethylene	9.68E-05
12	GO:0046686: response to cadmium ion	1.13E-04
13	GO:0031648: protein destabilization	1.41E-04
14	GO:0019521: D-gluconate metabolic process	1.41E-04
15	GO:0019374: galactolipid metabolic process	1.41E-04
16	GO:0051258: protein polymerization	1.41E-04
17	GO:0097054: L-glutamate biosynthetic process	1.41E-04
18	GO:0019395: fatty acid oxidation	1.41E-04
19	GO:0045039: protein import into mitochondrial inner membrane	2.40E-04
20	GO:0006556: S-adenosylmethionine biosynthetic process	2.40E-04
21	GO:0010359: regulation of anion channel activity	2.40E-04
22	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	2.68E-04
23	GO:0009845: seed germination	3.09E-04
24	GO:0009873: ethylene-activated signaling pathway	3.25E-04
25	GO:2000114: regulation of establishment of cell polarity	3.49E-04
26	GO:0006624: vacuolar protein processing	3.49E-04
27	GO:2001289: lipid X metabolic process	3.49E-04
28	GO:0006809: nitric oxide biosynthetic process	3.49E-04
29	GO:0072583: clathrin-dependent endocytosis	3.49E-04
30	GO:0006537: glutamate biosynthetic process	3.49E-04
31	GO:0015031: protein transport	4.45E-04
32	GO:0019676: ammonia assimilation cycle	4.66E-04
33	GO:0010363: regulation of plant-type hypersensitive response	4.66E-04
34	GO:0042991: transcription factor import into nucleus	4.66E-04
35	GO:0009738: abscisic acid-activated signaling pathway	5.07E-04
36	GO:0070814: hydrogen sulfide biosynthetic process	7.24E-04
37	GO:0010358: leaf shaping	7.24E-04
38	GO:0009920: cell plate formation involved in plant-type cell wall biogenesis	7.24E-04
39	GO:1902456: regulation of stomatal opening	7.24E-04
40	GO:0010119: regulation of stomatal movement	8.23E-04
41	GO:0006511: ubiquitin-dependent protein catabolic process	8.47E-04
42	GO:0000911: cytokinesis by cell plate formation	8.63E-04
43	GO:0006955: immune response	1.01E-03
44	GO:0046470: phosphatidylcholine metabolic process	1.01E-03
45	GO:0046777: protein autophosphorylation	1.04E-03
46	GO:0006631: fatty acid metabolic process	1.06E-03
47	GO:0051707: response to other organism	1.14E-03
48	GO:0006644: phospholipid metabolic process	1.16E-03
49	GO:0048766: root hair initiation	1.16E-03
50	GO:0006605: protein targeting	1.16E-03
51	GO:0030968: endoplasmic reticulum unfolded protein response	1.32E-03
52	GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process	1.37E-03
53	GO:0006098: pentose-phosphate shunt	1.48E-03
54	GO:0016042: lipid catabolic process	1.49E-03
55	GO:2000280: regulation of root development	1.65E-03
56	GO:0019538: protein metabolic process	1.83E-03
57	GO:0000103: sulfate assimilation	1.83E-03
58	GO:0072593: reactive oxygen species metabolic process	2.02E-03
59	GO:0071365: cellular response to auxin stimulus	2.21E-03
60	GO:0000266: mitochondrial fission	2.21E-03
61	GO:0012501: programmed cell death	2.21E-03
62	GO:0010102: lateral root morphogenesis	2.41E-03
63	GO:0032436: positive regulation of proteasomal ubiquitin-dependent protein catabolic process	2.41E-03
64	GO:0009887: animal organ morphogenesis	2.62E-03
65	GO:0030150: protein import into mitochondrial matrix	3.26E-03
66	GO:2000377: regulation of reactive oxygen species metabolic process	3.26E-03
67	GO:0009695: jasmonic acid biosynthetic process	3.49E-03
68	GO:0031408: oxylipin biosynthetic process	3.72E-03
69	GO:0006730: one-carbon metabolic process	3.95E-03
70	GO:0030433: ubiquitin-dependent ERAD pathway	3.95E-03
71	GO:0031348: negative regulation of defense response	3.95E-03
72	GO:0009693: ethylene biosynthetic process	4.20E-03
73	GO:0010091: trichome branching	4.44E-03
74	GO:0009306: protein secretion	4.44E-03
75	GO:0010087: phloem or xylem histogenesis	4.95E-03
76	GO:0010051: xylem and phloem pattern formation	4.95E-03
77	GO:0010154: fruit development	5.21E-03
78	GO:0042752: regulation of circadian rhythm	5.48E-03
79	GO:0048825: cotyledon development	5.75E-03
80	GO:0010193: response to ozone	6.02E-03
81	GO:0006635: fatty acid beta-oxidation	6.02E-03
82	GO:0010583: response to cyclopentenone	6.31E-03
83	GO:0016032: viral process	6.31E-03
84	GO:0007049: cell cycle	6.32E-03
85	GO:0071281: cellular response to iron ion	6.59E-03
86	GO:0048366: leaf development	6.66E-03
87	GO:0006464: cellular protein modification process	6.88E-03
88	GO:0006914: autophagy	6.88E-03
89	GO:0006904: vesicle docking involved in exocytosis	7.18E-03
90	GO:0016579: protein deubiquitination	7.47E-03
91	GO:0006979: response to oxidative stress	7.88E-03
92	GO:0009788: negative regulation of abscisic acid-activated signaling pathway	8.08E-03
93	GO:0009816: defense response to bacterium, incompatible interaction	8.08E-03
94	GO:0006888: ER to Golgi vesicle-mediated transport	8.71E-03
95	GO:0006950: response to stress	8.71E-03
96	GO:0009817: defense response to fungus, incompatible interaction	9.36E-03
97	GO:0009651: response to salt stress	9.62E-03
98	GO:0006499: N-terminal protein myristoylation	1.00E-02
99	GO:0010043: response to zinc ion	1.04E-02
100	GO:0007568: aging	1.04E-02
101	GO:0048527: lateral root development	1.04E-02
102	GO:0009753: response to jasmonic acid	1.11E-02
103	GO:0006897: endocytosis	1.25E-02
104	GO:0000209: protein polyubiquitination	1.36E-02
105	GO:0009734: auxin-activated signaling pathway	1.46E-02
106	GO:0009846: pollen germination	1.55E-02
107	GO:0042538: hyperosmotic salinity response	1.55E-02
108	GO:0009809: lignin biosynthetic process	1.63E-02
109	GO:0009736: cytokinin-activated signaling pathway	1.63E-02
110	GO:0009611: response to wounding	1.89E-02
111	GO:0018105: peptidyl-serine phosphorylation	2.14E-02
112	GO:0009793: embryo development ending in seed dormancy	2.26E-02
113	GO:0009790: embryo development	2.75E-02
114	GO:0006633: fatty acid biosynthetic process	2.89E-02
115	GO:0040008: regulation of growth	2.99E-02
116	GO:0007623: circadian rhythm	3.09E-02
117	GO:0010150: leaf senescence	3.09E-02
118	GO:0006508: proteolysis	3.21E-02
119	GO:0007166: cell surface receptor signaling pathway	3.40E-02
120	GO:0010468: regulation of gene expression	3.51E-02
121	GO:0009733: response to auxin	4.19E-02
122	GO:0006970: response to osmotic stress	4.45E-02
123	GO:0009860: pollen tube growth	4.45E-02

Rank	GO Term	Adjusted P value
1	GO:0015930: glutamate synthase activity	0.00E+00
2	GO:0004620: phospholipase activity	1.82E-05
3	GO:0016041: glutamate synthase (ferredoxin) activity	5.79E-05
4	GO:0005515: protein binding	1.31E-04
5	GO:0003988: acetyl-CoA C-acyltransferase activity	1.41E-04
6	GO:0004298: threonine-type endopeptidase activity	1.87E-04
7	GO:0004478: methionine adenosyltransferase activity	2.40E-04
8	GO:0004781: sulfate adenylyltransferase (ATP) activity	2.40E-04
9	GO:0016805: dipeptidase activity	2.40E-04
10	GO:0008276: protein methyltransferase activity	3.49E-04
11	GO:0004197: cysteine-type endopeptidase activity	4.13E-04
12	GO:0070696: transmembrane receptor protein serine/threonine kinase binding	5.92E-04
13	GO:0005546: phosphatidylinositol-4,5-bisphosphate binding	5.92E-04
14	GO:0051538: 3 iron, 4 sulfur cluster binding	5.92E-04
15	GO:0031593: polyubiquitin binding	7.24E-04
16	GO:0047714: galactolipase activity	7.24E-04
17	GO:0008113: peptide-methionine (S)-S-oxide reductase activity	8.63E-04
18	GO:0102391: decanoate--CoA ligase activity	8.63E-04
19	GO:0003950: NAD+ ADP-ribosyltransferase activity	8.63E-04
20	GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity	8.63E-04
21	GO:0004467: long-chain fatty acid-CoA ligase activity	1.01E-03
22	GO:0008235: metalloexopeptidase activity	1.01E-03
23	GO:0102425: myricetin 3-O-glucosyltransferase activity	1.01E-03
24	GO:0102360: daphnetin 3-O-glucosyltransferase activity	1.01E-03
25	GO:0047893: flavonol 3-O-glucosyltransferase activity	1.16E-03
26	GO:0052747: sinapyl alcohol dehydrogenase activity	1.16E-03
27	GO:0004630: phospholipase D activity	1.32E-03
28	GO:0008970: phosphatidylcholine 1-acylhydrolase activity	1.32E-03
29	GO:0070290: N-acylphosphatidylethanolamine-specific phospholipase D activity	1.32E-03
30	GO:0003924: GTPase activity	1.55E-03
31	GO:0045309: protein phosphorylated amino acid binding	1.65E-03
32	GO:0047617: acyl-CoA hydrolase activity	1.65E-03
33	GO:0008171: O-methyltransferase activity	1.83E-03
34	GO:0004177: aminopeptidase activity	2.02E-03
35	GO:0019904: protein domain specific binding	2.02E-03
36	GO:0045551: cinnamyl-alcohol dehydrogenase activity	2.21E-03
37	GO:0015266: protein channel activity	2.41E-03
38	GO:0031624: ubiquitin conjugating enzyme binding	2.62E-03
39	GO:0004175: endopeptidase activity	2.62E-03
40	GO:0016887: ATPase activity	2.69E-03
41	GO:0043130: ubiquitin binding	3.26E-03
42	GO:0043424: protein histidine kinase binding	3.49E-03
43	GO:0035251: UDP-glucosyltransferase activity	3.72E-03
44	GO:0036459: thiol-dependent ubiquitinyl hydrolase activity	3.72E-03
45	GO:0030276: clathrin binding	5.21E-03
46	GO:0001085: RNA polymerase II transcription factor binding	5.21E-03
47	GO:0005524: ATP binding	5.34E-03
48	GO:0004843: thiol-dependent ubiquitin-specific protease activity	6.02E-03
49	GO:0008233: peptidase activity	6.90E-03
50	GO:0061630: ubiquitin protein ligase activity	7.38E-03
51	GO:0009931: calcium-dependent protein serine/threonine kinase activity	8.40E-03
52	GO:0004683: calmodulin-dependent protein kinase activity	8.71E-03
53	GO:0004806: triglyceride lipase activity	8.71E-03
54	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	9.36E-03
55	GO:0005096: GTPase activator activity	9.69E-03
56	GO:0030145: manganese ion binding	1.04E-02
57	GO:0001228: transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding	1.04E-02
58	GO:0005198: structural molecule activity	1.44E-02
59	GO:0004674: protein serine/threonine kinase activity	1.71E-02
60	GO:0031625: ubiquitin protein ligase binding	1.75E-02
61	GO:0008234: cysteine-type peptidase activity	1.75E-02
62	GO:0043565: sequence-specific DNA binding	1.81E-02
63	GO:0080043: quercetin 3-O-glucosyltransferase activity	1.97E-02
64	GO:0080044: quercetin 7-O-glucosyltransferase activity	1.97E-02
65	GO:0016787: hydrolase activity	2.05E-02
66	GO:0016758: transferase activity, transferring hexosyl groups	2.41E-02
67	GO:0000977: RNA polymerase II regulatory region sequence-specific DNA binding	2.70E-02
68	GO:0008565: protein transporter activity	2.80E-02
69	GO:0005525: GTP binding	3.04E-02
70	GO:0008017: microtubule binding	3.20E-02
71	GO:0008194: UDP-glycosyltransferase activity	3.35E-02
72	GO:0005509: calcium ion binding	3.45E-02
73	GO:0042626: ATPase activity, coupled to transmembrane movement of substances	3.67E-02
74	GO:0042802: identical protein binding	3.67E-02
75	GO:0008168: methyltransferase activity	4.11E-02
76	GO:0003682: chromatin binding	4.39E-02

Rank	GO Term	Adjusted P value
1	GO:0019822: P4 peroxisome	0.00E+00
2	GO:0005829: cytosol	1.30E-07
3	GO:0045334: clathrin-coated endocytic vesicle	5.79E-05
4	GO:0005773: vacuole	7.89E-05
5	GO:0000502: proteasome complex	1.25E-04
6	GO:0005839: proteasome core complex	1.87E-04
7	GO:0030139: endocytic vesicle	2.40E-04
8	GO:0005737: cytoplasm	2.78E-04
9	GO:0009524: phragmoplast	2.99E-04
10	GO:0031461: cullin-RING ubiquitin ligase complex	3.49E-04
11	GO:0032585: multivesicular body membrane	3.49E-04
12	GO:0000323: lytic vacuole	3.49E-04
13	GO:0005783: endoplasmic reticulum	7.04E-04
14	GO:0000151: ubiquitin ligase complex	7.16E-04
15	GO:0030127: COPII vesicle coat	7.24E-04
16	GO:0016363: nuclear matrix	8.63E-04
17	GO:0005819: spindle	9.76E-04
18	GO:0000794: condensed nuclear chromosome	1.01E-03
19	GO:0033116: endoplasmic reticulum-Golgi intermediate compartment membrane	1.01E-03
20	GO:0005886: plasma membrane	1.04E-03
21	GO:0031305: integral component of mitochondrial inner membrane	1.16E-03
22	GO:0009514: glyoxysome	1.32E-03
23	GO:0031901: early endosome membrane	1.48E-03
24	GO:0005635: nuclear envelope	1.62E-03
25	GO:0009570: chloroplast stroma	2.23E-03
26	GO:0005764: lysosome	2.62E-03
27	GO:0005769: early endosome	3.04E-03
28	GO:0005741: mitochondrial outer membrane	3.72E-03
29	GO:0005777: peroxisome	3.80E-03
30	GO:0005744: mitochondrial inner membrane presequence translocase complex	4.44E-03
31	GO:0030136: clathrin-coated vesicle	4.69E-03
32	GO:0009504: cell plate	5.75E-03
33	GO:0005667: transcription factor complex	8.40E-03
34	GO:0005789: endoplasmic reticulum membrane	1.34E-02
35	GO:0031966: mitochondrial membrane	1.55E-02
36	GO:0005834: heterotrimeric G-protein complex	1.92E-02
37	GO:0005623: cell	2.51E-02
38	GO:0005615: extracellular space	3.35E-02
39	GO:0005774: vacuolar membrane	3.73E-02
40	GO:0005618: cell wall	4.40E-02
41	GO:0080008: Cul4-RING E3 ubiquitin ligase complex	4.51E-02
42	GO:0005874: microtubule	4.80E-02