Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT1G53750

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:1990569: UDP-N-acetylglucosamine transmembrane transport0.00E+00
2GO:0015789: UDP-N-acetylgalactosamine transport0.00E+00
3GO:0006489: dolichyl diphosphate biosynthetic process0.00E+00
4GO:1903070: negative regulation of ER-associated ubiquitin-dependent protein catabolic process0.00E+00
5GO:1903857: negative regulation of cytokinin dehydrogenase activity0.00E+00
6GO:0009264: deoxyribonucleotide catabolic process0.00E+00
7GO:0030149: sphingolipid catabolic process0.00E+00
8GO:0006511: ubiquitin-dependent protein catabolic process7.61E-40
9GO:0030163: protein catabolic process5.10E-13
10GO:0046686: response to cadmium ion2.31E-12
11GO:0051603: proteolysis involved in cellular protein catabolic process1.73E-10
12GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process3.82E-10
13GO:0045899: positive regulation of RNA polymerase II transcriptional preinitiation complex assembly1.47E-09
14GO:0042176: regulation of protein catabolic process4.01E-07
15GO:0034976: response to endoplasmic reticulum stress4.66E-07
16GO:0030433: ubiquitin-dependent ERAD pathway1.17E-06
17GO:0051788: response to misfolded protein1.32E-06
18GO:0045454: cell redox homeostasis2.77E-06
19GO:0006457: protein folding8.98E-06
20GO:0010043: response to zinc ion2.46E-05
21GO:0043248: proteasome assembly5.10E-05
22GO:0061014: positive regulation of mRNA catabolic process1.64E-04
23GO:0097056: selenocysteinyl-tRNA(Sec) biosynthetic process1.64E-04
24GO:0042964: thioredoxin reduction1.64E-04
25GO:0010201: response to continuous far red light stimulus by the high-irradiance response system1.64E-04
26GO:0000291: nuclear-transcribed mRNA catabolic process, exonucleolytic1.64E-04
27GO:0035266: meristem growth1.64E-04
28GO:0007292: female gamete generation1.64E-04
29GO:0006434: seryl-tRNA aminoacylation1.64E-04
30GO:0006431: methionyl-tRNA aminoacylation1.64E-04
31GO:0009651: response to salt stress3.29E-04
32GO:0006820: anion transport3.54E-04
33GO:0015786: UDP-glucose transport3.73E-04
34GO:0019752: carboxylic acid metabolic process3.73E-04
35GO:0009156: ribonucleoside monophosphate biosynthetic process3.73E-04
36GO:0006123: mitochondrial electron transport, cytochrome c to oxygen3.73E-04
37GO:0006212: uracil catabolic process3.73E-04
38GO:0006101: citrate metabolic process3.73E-04
39GO:0019483: beta-alanine biosynthetic process3.73E-04
40GO:0006435: threonyl-tRNA aminoacylation3.73E-04
41GO:0045087: innate immune response4.00E-04
42GO:0090351: seedling development5.09E-04
43GO:0055074: calcium ion homeostasis6.11E-04
44GO:0009961: response to 1-aminocyclopropane-1-carboxylic acid6.11E-04
45GO:0015783: GDP-fucose transport6.11E-04
46GO:0060968: regulation of gene silencing6.11E-04
47GO:0010498: proteasomal protein catabolic process6.11E-04
48GO:0015992: proton transport7.57E-04
49GO:0010255: glucose mediated signaling pathway8.73E-04
50GO:0001676: long-chain fatty acid metabolic process8.73E-04
51GO:0046836: glycolipid transport8.73E-04
52GO:0051259: protein oligomerization8.73E-04
53GO:0072334: UDP-galactose transmembrane transport8.73E-04
54GO:0009647: skotomorphogenesis8.73E-04
55GO:0010587: miRNA catabolic process8.73E-04
56GO:0009735: response to cytokinin8.92E-04
57GO:0015991: ATP hydrolysis coupled proton transport1.13E-03
58GO:0031087: deadenylation-independent decapping of nuclear-transcribed mRNA1.16E-03
59GO:0009165: nucleotide biosynthetic process1.16E-03
60GO:0010363: regulation of plant-type hypersensitive response1.16E-03
61GO:0009553: embryo sac development1.20E-03
62GO:0015986: ATP synthesis coupled proton transport1.30E-03
63GO:0098719: sodium ion import across plasma membrane1.47E-03
64GO:0006564: L-serine biosynthetic process1.47E-03
65GO:0006097: glyoxylate cycle1.47E-03
66GO:1902183: regulation of shoot apical meristem development1.47E-03
67GO:0036065: fucosylation1.47E-03
68GO:0009630: gravitropism1.59E-03
69GO:0006121: mitochondrial electron transport, succinate to ubiquinone1.80E-03
70GO:0048827: phyllome development1.80E-03
71GO:0048232: male gamete generation1.80E-03
72GO:0010286: heat acclimation1.91E-03
73GO:0009554: megasporogenesis2.17E-03
74GO:1901001: negative regulation of response to salt stress2.17E-03
75GO:0009612: response to mechanical stimulus2.17E-03
76GO:0032880: regulation of protein localization2.55E-03
77GO:0009610: response to symbiotic fungus2.55E-03
78GO:0048528: post-embryonic root development2.55E-03
79GO:0006744: ubiquinone biosynthetic process2.55E-03
80GO:0000338: protein deneddylation2.55E-03
81GO:0070370: cellular heat acclimation2.55E-03
82GO:0006122: mitochondrial electron transport, ubiquinol to cytochrome c2.55E-03
83GO:0016049: cell growth2.65E-03
84GO:0009832: plant-type cell wall biogenesis2.93E-03
85GO:0010078: maintenance of root meristem identity2.95E-03
86GO:0031540: regulation of anthocyanin biosynthetic process2.95E-03
87GO:0040029: regulation of gene expression, epigenetic2.95E-03
88GO:0006102: isocitrate metabolic process2.95E-03
89GO:0006644: phospholipid metabolic process2.95E-03
90GO:0009061: anaerobic respiration2.95E-03
91GO:0006402: mRNA catabolic process2.95E-03
92GO:0043562: cellular response to nitrogen levels3.37E-03
93GO:0019430: removal of superoxide radicals3.37E-03
94GO:0006099: tricarboxylic acid cycle3.68E-03
95GO:0015780: nucleotide-sugar transport3.81E-03
96GO:0098656: anion transmembrane transport3.81E-03
97GO:0046685: response to arsenic-containing substance3.81E-03
98GO:0009245: lipid A biosynthetic process3.81E-03
99GO:0006631: fatty acid metabolic process4.18E-03
100GO:0051453: regulation of intracellular pH4.27E-03
101GO:0043067: regulation of programmed cell death4.27E-03
102GO:0010449: root meristem growth4.27E-03
103GO:0009926: auxin polar transport4.53E-03
104GO:0008283: cell proliferation4.53E-03
105GO:0048829: root cap development4.75E-03
106GO:0009793: embryo development ending in seed dormancy4.87E-03
107GO:0009965: leaf morphogenesis5.09E-03
108GO:0048229: gametophyte development5.25E-03
109GO:0010015: root morphogenesis5.25E-03
110GO:0006807: nitrogen compound metabolic process6.30E-03
111GO:0006626: protein targeting to mitochondrion6.30E-03
112GO:0010102: lateral root morphogenesis6.30E-03
113GO:0009933: meristem structural organization6.85E-03
114GO:0009969: xyloglucan biosynthetic process7.41E-03
115GO:0007030: Golgi organization7.41E-03
116GO:0048316: seed development7.44E-03
117GO:0006487: protein N-linked glycosylation8.59E-03
118GO:0009116: nucleoside metabolic process8.59E-03
119GO:0030150: protein import into mitochondrial matrix8.59E-03
120GO:0008299: isoprenoid biosynthetic process9.21E-03
121GO:0051726: regulation of cell cycle9.21E-03
122GO:0048364: root development9.81E-03
123GO:0001944: vasculature development1.11E-02
124GO:0007275: multicellular organism development1.16E-02
125GO:0010584: pollen exine formation1.18E-02
126GO:0042147: retrograde transport, endosome to Golgi1.25E-02
127GO:0009790: embryo development1.27E-02
128GO:0000413: protein peptidyl-prolyl isomerization1.32E-02
129GO:0010197: polar nucleus fusion1.39E-02
130GO:0048868: pollen tube development1.39E-02
131GO:0008360: regulation of cell shape1.39E-02
132GO:0006520: cellular amino acid metabolic process1.39E-02
133GO:0006814: sodium ion transport1.47E-02
134GO:0008654: phospholipid biosynthetic process1.54E-02
135GO:0009556: microsporogenesis1.54E-02
136GO:0048825: cotyledon development1.54E-02
137GO:0010193: response to ozone1.62E-02
138GO:0009567: double fertilization forming a zygote and endosperm1.86E-02
139GO:0071805: potassium ion transmembrane transport1.94E-02
140GO:0016579: protein deubiquitination2.02E-02
141GO:0009817: defense response to fungus, incompatible interaction2.54E-02
142GO:0010311: lateral root formation2.63E-02
143GO:0006499: N-terminal protein myristoylation2.72E-02
144GO:0006811: ion transport2.72E-02
145GO:0009640: photomorphogenesis3.60E-02
146GO:0008643: carbohydrate transport3.81E-02
147GO:0009636: response to toxic substance3.91E-02
148GO:0055114: oxidation-reduction process4.09E-02
149GO:0006812: cation transport4.23E-02
150GO:0009846: pollen germination4.23E-02
151GO:0009408: response to heat4.26E-02
152GO:0009736: cytokinin-activated signaling pathway4.45E-02
153GO:0009809: lignin biosynthetic process4.45E-02
154GO:0006486: protein glycosylation4.45E-02
155GO:0009585: red, far-red light phototransduction4.45E-02
156GO:0042742: defense response to bacterium4.62E-02
157GO:0006979: response to oxidative stress4.66E-02
158GO:0009909: regulation of flower development4.78E-02
RankGO TermAdjusted P value
1GO:0008670: 2,4-dienoyl-CoA reductase (NADPH) activity0.00E+00
2GO:0008752: FMN reductase activity0.00E+00
3GO:0005463: UDP-N-acetylgalactosamine transmembrane transporter activity0.00E+00
4GO:0055105: ubiquitin-protein transferase inhibitor activity0.00E+00
5GO:0008117: sphinganine-1-phosphate aldolase activity0.00E+00
6GO:0003837: beta-ureidopropionase activity0.00E+00
7GO:0052873: FMN reductase (NADPH) activity0.00E+00
8GO:0004298: threonine-type endopeptidase activity2.36E-43
9GO:0008233: peptidase activity7.69E-23
10GO:0036402: proteasome-activating ATPase activity1.47E-09
11GO:0017025: TBP-class protein binding3.59E-07
12GO:0003756: protein disulfide isomerase activity1.73E-06
13GO:0030234: enzyme regulator activity6.67E-06
14GO:0015288: porin activity1.23E-04
15GO:0008308: voltage-gated anion channel activity1.53E-04
16GO:0016887: ATPase activity1.60E-04
17GO:0004825: methionine-tRNA ligase activity1.64E-04
18GO:0016229: steroid dehydrogenase activity1.64E-04
19GO:0010013: N-1-naphthylphthalamic acid binding1.64E-04
20GO:0003975: UDP-N-acetylglucosamine-dolichyl-phosphate N-acetylglucosaminephosphotransferase activity1.64E-04
21GO:0004828: serine-tRNA ligase activity1.64E-04
22GO:0070401: NADP+ binding1.64E-04
23GO:0050200: plasmalogen synthase activity1.64E-04
24GO:0030544: Hsp70 protein binding1.64E-04
25GO:0046961: proton-transporting ATPase activity, rotational mechanism3.08E-04
26GO:0050897: cobalt ion binding3.55E-04
27GO:0008963: phospho-N-acetylmuramoyl-pentapeptide-transferase activity3.73E-04
28GO:0004617: phosphoglycerate dehydrogenase activity3.73E-04
29GO:0003994: aconitate hydratase activity3.73E-04
30GO:0050347: trans-octaprenyltranstransferase activity3.73E-04
31GO:0052924: all-trans-nonaprenyl-diphosphate synthase (geranylgeranyl-diphosphate specific) activity3.73E-04
32GO:0004534: 5'-3' exoribonuclease activity3.73E-04
33GO:0004829: threonine-tRNA ligase activity3.73E-04
34GO:0004175: endopeptidase activity4.55E-04
35GO:0003955: NAD(P)H dehydrogenase (quinone) activity6.11E-04
36GO:0005457: GDP-fucose transmembrane transporter activity6.11E-04
37GO:0008253: 5'-nucleotidase activity6.11E-04
38GO:0004148: dihydrolipoyl dehydrogenase activity6.11E-04
39GO:0019003: GDP binding6.11E-04
40GO:0043130: ubiquitin binding6.27E-04
41GO:0005460: UDP-glucose transmembrane transporter activity8.73E-04
42GO:0017089: glycolipid transporter activity8.73E-04
43GO:0004749: ribose phosphate diphosphokinase activity8.73E-04
44GO:0004659: prenyltransferase activity1.16E-03
45GO:0015368: calcium:cation antiporter activity1.16E-03
46GO:0008409: 5'-3' exonuclease activity1.16E-03
47GO:0051861: glycolipid binding1.16E-03
48GO:0015369: calcium:proton antiporter activity1.16E-03
49GO:0016853: isomerase activity1.30E-03
50GO:0000104: succinate dehydrogenase activity1.47E-03
51GO:0005459: UDP-galactose transmembrane transporter activity1.47E-03
52GO:0008177: succinate dehydrogenase (ubiquinone) activity1.47E-03
53GO:0031593: polyubiquitin binding1.80E-03
54GO:0031177: phosphopantetheine binding1.80E-03
55GO:0000035: acyl binding2.17E-03
56GO:0102391: decanoate--CoA ligase activity2.17E-03
57GO:0004467: long-chain fatty acid-CoA ligase activity2.55E-03
58GO:0008107: galactoside 2-alpha-L-fucosyltransferase activity2.55E-03
59GO:0016831: carboxy-lyase activity2.55E-03
60GO:0005338: nucleotide-sugar transmembrane transporter activity2.55E-03
61GO:0015491: cation:cation antiporter activity2.95E-03
62GO:0000036: ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process2.95E-03
63GO:0052747: sinapyl alcohol dehydrogenase activity2.95E-03
64GO:0004033: aldo-keto reductase (NADP) activity2.95E-03
65GO:0015078: hydrogen ion transmembrane transporter activity3.37E-03
66GO:0008417: fucosyltransferase activity3.81E-03
67GO:0000989: transcription factor activity, transcription factor binding3.81E-03
68GO:0004177: aminopeptidase activity5.25E-03
69GO:0004161: dimethylallyltranstransferase activity5.25E-03
70GO:0015386: potassium:proton antiporter activity5.25E-03
71GO:0003755: peptidyl-prolyl cis-trans isomerase activity5.28E-03
72GO:0045551: cinnamyl-alcohol dehydrogenase activity5.77E-03
73GO:0000049: tRNA binding5.77E-03
74GO:0015266: protein channel activity6.30E-03
75GO:0008266: poly(U) RNA binding6.85E-03
76GO:0004190: aspartic-type endopeptidase activity7.41E-03
77GO:0005507: copper ion binding7.80E-03
78GO:0003714: transcription corepressor activity8.59E-03
79GO:0036459: thiol-dependent ubiquitinyl hydrolase activity9.84E-03
80GO:0004540: ribonuclease activity9.84E-03
81GO:0008514: organic anion transmembrane transporter activity1.18E-02
82GO:0005515: protein binding1.19E-02
83GO:0046933: proton-transporting ATP synthase activity, rotational mechanism1.39E-02
84GO:0004791: thioredoxin-disulfide reductase activity1.47E-02
85GO:0005524: ATP binding1.47E-02
86GO:0010181: FMN binding1.47E-02
87GO:0004843: thiol-dependent ubiquitin-specific protease activity1.62E-02
88GO:0015385: sodium:proton antiporter activity1.77E-02
89GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor1.77E-02
90GO:0000166: nucleotide binding1.92E-02
91GO:0016597: amino acid binding2.02E-02
92GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity2.54E-02
93GO:0050660: flavin adenine dinucleotide binding2.70E-02
94GO:0003746: translation elongation factor activity3.01E-02
95GO:0051539: 4 iron, 4 sulfur cluster binding3.30E-02
96GO:0051287: NAD binding4.12E-02
97GO:0009055: electron carrier activity4.56E-02
RankGO TermAdjusted P value
1GO:0000327: lytic vacuole within protein storage vacuole0.00E+00
2GO:0019774: proteasome core complex, beta-subunit complex0.00E+00
3GO:0000502: proteasome complex2.51E-69
4GO:0005839: proteasome core complex2.36E-43
5GO:0005829: cytosol4.73E-26
6GO:0019773: proteasome core complex, alpha-subunit complex2.18E-21
7GO:0005774: vacuolar membrane3.94E-15
8GO:0008541: proteasome regulatory particle, lid subcomplex2.48E-14
9GO:0031595: nuclear proteasome complex5.74E-14
10GO:0008540: proteasome regulatory particle, base subcomplex1.60E-12
11GO:0005737: cytoplasm1.56E-09
12GO:0031597: cytosolic proteasome complex3.27E-09
13GO:0005783: endoplasmic reticulum6.03E-07
14GO:0005838: proteasome regulatory particle4.89E-06
15GO:0005788: endoplasmic reticulum lumen1.18E-05
16GO:0005773: vacuole2.42E-05
17GO:0022626: cytosolic ribosome2.90E-05
18GO:0009506: plasmodesma8.56E-05
19GO:0046930: pore complex1.53E-04
20GO:0033178: proton-transporting two-sector ATPase complex, catalytic domain3.73E-04
21GO:0005753: mitochondrial proton-transporting ATP synthase complex5.09E-04
22GO:0046861: glyoxysomal membrane6.11E-04
23GO:0070469: respiratory chain6.90E-04
24GO:0005741: mitochondrial outer membrane7.57E-04
25GO:0000275: mitochondrial proton-transporting ATP synthase complex, catalytic core F(1)1.16E-03
26GO:0005844: polysome1.16E-03
27GO:0033179: proton-transporting V-type ATPase, V0 domain1.16E-03
28GO:0030904: retromer complex1.80E-03
29GO:0032580: Golgi cisterna membrane1.80E-03
30GO:0005759: mitochondrial matrix2.20E-03
31GO:0009705: plant-type vacuole membrane2.48E-03
32GO:0005634: nucleus2.86E-03
33GO:0045273: respiratory chain complex II2.95E-03
34GO:0005749: mitochondrial respiratory chain complex II, succinate dehydrogenase complex (ubiquinone)2.95E-03
35GO:0000325: plant-type vacuole3.21E-03
36GO:0000326: protein storage vacuole3.37E-03
37GO:0009514: glyoxysome3.37E-03
38GO:0005742: mitochondrial outer membrane translocase complex3.37E-03
39GO:0010494: cytoplasmic stress granule3.81E-03
40GO:0008180: COP9 signalosome3.81E-03
41GO:0005618: cell wall4.80E-03
42GO:0005886: plasma membrane5.63E-03
43GO:0030176: integral component of endoplasmic reticulum membrane7.41E-03
44GO:0005747: mitochondrial respiratory chain complex I7.44E-03
45GO:0005769: early endosome8.00E-03
46GO:0005758: mitochondrial intermembrane space8.59E-03
47GO:0009507: chloroplast1.46E-02
48GO:0016592: mediator complex1.70E-02
49GO:0000932: P-body2.10E-02
50GO:0005789: endoplasmic reticulum membrane2.50E-02
51GO:0015934: large ribosomal subunit2.82E-02
52GO:0005819: spindle3.20E-02
53GO:0048046: apoplast3.30E-02
54GO:0031902: late endosome membrane3.40E-02
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Gene type



Gene DE type