gene detail

Gene description

TAIR ID: AT1G05750

Short description: Tetratricopeptide repeat (TPR)-like superfamily protein

Pathogen responsiveness: -2.59

General responsiveness: -3.33

Orthologous

Rice: No orthologous gene

Maize:

GRMZM2G158839

Wheat:

TAAFFX.120234.1.S1_AT

GO biological process

RNA modification

GO cellular component

chloroplast, mitochondrion

GO molecular function

RNA binding, endonuclease activity

Protein domain

Pfam	PF13041, PPR repeat family
Pfam	PF01535, PPR repeat

Metabolic pathway

PWY-3781: aerobic respiration (cytochrome c)

KEGG pathway

Not involved in KEGG pathway

Transcriptional regulation

Regulator:
AT5G47230, AT3G15210, AT5G47220, AT1G50640, AT5G61850, AT4G17500

Target:
none

Protein-protein interaction network

The number of partners (degree) is: 2

No Interactor

Coexpression network

GSE26679_WT_GC view
GSE26679_EDR1_GC view

Differentially expressed condition

5 conditions

Series	Control	Treatment	Log₂FC	Adj. P value
GSE26679	Col, WT, GC 0 h	Col, WT, GC 18 h	1.58	2.47E-10
GSE26679	Col, WT, GC 0 h	Col, WT, GC 36 h	1.58	2.16E-10
GSE26679	Col, edr1, GC 0 h	Col, edr1, GC 36 h	1.80	1.15E-11
GSE37269	Ei2, WT, control	Ei2, WT, TEV 21 d	-1.69	2.17E-02
GSE37269	St0, WT, control	St0, WT, TEV 21 d	-1.72	1.34E-02