Gene: AT4G16780
     


Gene description


TAIR ID: AT4G16780

Short description: homeobox protein 2

Pathogen responsiveness: -0.51

General responsiveness: -0.23

Orthologous


Rice: No orthologous gene
Maize: No orthologous gene
Wheat: No orthologous gene

GO biological process


cell proliferation, root development, response to far red light, negative regulation of transcription, DNA-templated, response to cytokinin, transcription, red, far-red light phototransduction, unidimensional cell growth, response to auxin, shoot system morphogenesis, shade avoidance, red or far-red light signaling pathway, regulation of transcription


GO cellular component


nucleus


GO molecular function


protein homodimerization activity, protein binding, transcription factor activity, sequence-specific DNA binding


Protein domain


PfamPF00046, Homeobox domain
PfamPF02183, Homeobox associated leucine zipper
PfamPF04618, HD-ZIP protein N terminus
SMARTSM00389, HOX
SMARTSM00340, HALZ

Metabolic pathway


Not involved in metabolic pathway


KEGG pathway


Not involved in KEGG pathway


Transcriptional regulation


Regulator:
AT1G02340, AT1G24260, AT5G41315, AT2G43010

Target:
AT1G02340

Protein-protein interaction network


The number of partners (degree) is: 18 (Top10%)

click to view PPI network

Coexpression network

GSE26679_EDR1_GC  view

Differentially expressed condition


9 conditions



SeriesControlTreatmentLog2FCAdj. P value
GSE17464Laer, controlLaer, Alternaria brassicicola 3 d1.781.87E-02
GSE17464Laer, controlLaer, PstDC3000 12 h3.231.27E-05
GSE17464Penta, controlPenta, Alternaria brassicicola 3 d2.311.51E-03
GSE17464Penta, controlPenta, PstDC3000 12 h3.082.20E-05
GSE17464Penta, controlPenta, Flg22 2 h1.543.68E-02
GSE26679Col, edr1, GC 0 hCol, edr1, GC 96 h1.606.73E-06
GSE37269Ei2, WT, controlEi2, WT, TEV 21 d-2.358.87E-03
GSE37269St0, WT, controlSt0, WT, TEV 21 d-1.991.70E-02
GSE58954Col, WT, Psm AvrRpt2 0 hCol, WT, Psm AvrRpt2 6 h-1.763.28E-03






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