gene detail

Gene description

TAIR ID: AT5G66570

Short description: PS II oxygen-evolving complex 1

Pathogen responsiveness: -0.82

General responsiveness: 2.90

Orthologous

Rice: No orthologous gene

Maize:

GRMZM2G175562 GRMZM2G113349

Wheat: No orthologous gene

GO biological process

defense response to bacterium, photosystem II stabilization, regulation of protein dephosphorylation, photosystem II assembly, photoinhibition, photosynthesis, light reaction

GO cellular component

photosystem II oxygen evolving complex, chloroplast thylakoid membrane, chloroplast thylakoid lumen, plastoglobule, chloroplast photosystem II, chloroplast, plastid thylakoid membrane, extrinsic component of membrane, chloroplast stroma, thylakoid, chloroplast thylakoid, apoplast, thylakoid lumen, integral component of membrane

GO molecular function

calcium ion binding, protein binding, oxygen evolving activity

Protein domain

Pfam	PF01716, Manganese-stabilising protein / photosystem II polypeptide

Metabolic pathway

PHOTOALL-PWY: oxygenic photosynthesis
PWY-101: photosynthesis light reactions

KEGG pathway

PATH:ath00195: Photosynthesis

Transcriptional regulation

Regulator:
AT2G36270, AT5G11260, AT1G32640, AT5G61850, AT2G43010

Target:
none

Protein-protein interaction network

The number of partners (degree) is: 5

click to view PPI network

Coexpression network

GSE26679_WT_GC  view
GSE56094_WT_HRPA-  view
GSE13739_WT_GO  view
GSE13739_EDS16_GO  view
GSE5686_WT_GO  view
GSE56094_WT_PSTDC3000  view

Differentially expressed condition

14 conditions

Series	Control	Treatment	Log₂FC	Adj. P value
GSE18978	Col, WT, control 24 h	Col, WT, PsmES4326 24 h	-1.91	4.46E-09
GSE5520	Col, WT, control 10 h	Col, WT, Cor- 10 h	-1.82	2.87E-04
GSE5520	Col, WT, control 7 h	Col, WT, PstDC3000 7 h	-1.90	1.45E-05
GSE56094	Col, WT, control 10 h	Col, WT, PstDC3000 10 h	-2.27	7.13E-11
GSE56094	Col, WT, control 11 h	Col, WT, PstDC3000 11 h	-2.39	2.43E-11
GSE56094	Col, WT, control 11 h	Col, WT, hrpA- 11 h	-1.81	4.59E-07
GSE56094	Col, WT, control 12 h	Col, WT, PstDC3000 12 h	-1.99	9.61E-09
GSE56094	Col, WT, control 13 h	Col, WT, PstDC3000 13 h	-2.36	2.45E-11
GSE56094	Col, WT, control 5 h	Col, WT, PstDC3000 5 h	-1.66	1.32E-05
GSE56094	Col, WT, control 6 h	Col, WT, PstDC3000 6 h	-2.06	2.47E-08
GSE56094	Col, WT, control 6 h	Col, WT, hrpA- 6 h	-1.62	1.75E-05
GSE56094	Col, WT, control 9 h	Col, WT, PstDC3000 9 h	-2.24	5.29E-10
GSE56094	Col, WT, control 9 h	Col, WT, hrpA- 9 h	-2.05	3.57E-08
GSE6176	Col, WT, control 12 h	Col, WT, PstDC3000 12 h	-1.51	4.47E-08