gene detail

Gene description

TAIR ID: AT5G58290

Short description: regulatory particle triple-A ATPase 3

Pathogen responsiveness: -0.93

General responsiveness: -1.20

Orthologous

Rice: No orthologous gene

Maize:

GRMZM2G038126

Wheat:

TA.21374.1.S1_AT TA.21374.1.S1_X_AT

GO biological process

ubiquitin-dependent protein catabolic process, ubiquitin-dependent ERAD pathway, positive regulation of RNA polymerase II transcriptional preinitiation complex assembly

GO cellular component

nuclear proteasome complex, cytosolic proteasome complex, cytosol, proteasome regulatory particle, base subcomplex, cell wall, plasmodesma, nucleus, membrane

GO molecular function

ATP binding, proteasome-activating ATPase activity, ATPase activity, TBP-class protein binding

Protein domain

Pfam	PF00004, ATPase family associated with various cellular activities (AAA)
SMART	SM00382, AAA

Metabolic pathway

Not involved in metabolic pathway

KEGG pathway

PATH:ath03050: Proteasome

Transcriptional regulation

Regulator:
AT4G36990

Target:
none

Protein-protein interaction network

The number of partners (degree) is: 8

click to view PPI network

Coexpression network

GSE26679_WT_GC  view
GSE56094_WT_HRPA-  view
GSE13739_WT_GO  view
GSE5686_WT_GO  view
GSE56094_WT_PSTDC3000  view
GSE45212_WT_PSTDC3000_AVRRPT2  view
GSE13739_EDS16_GO  view
GSE26679_EDR1_GC  view
GSE45212_MED14_PSTDC3000_AVRRPT2  view

Differentially expressed condition

8 conditions

Series	Control	Treatment	Log₂FC	Adj. P value
GSE17500	Col, WT, control 0 h	Col, WT, PstDC3000 24 h	1.60	1.02E-05
GSE18978	Col, WT, control 24 h	Col, WT, PsmES4326 24 h	2.35	6.06E-11
GSE45212	Col, WT, PstDC3000 AvrRpt2 0 h	Col, WT, PstDC3000 AvrRpt2 12 h	2.22	8.56E-14
GSE45212	Col, med14, PstDC3000 AvrRpt2 0 h	Col, med14, PstDC3000 AvrRpt2 12 h	2.64	9.44E-15
GSE45212	Col, med14, PstDC3000 AvrRpt2 0 h	Col, med14, PstDC3000 AvrRpt2 8 h	2.46	2.02E-14
GSE56094	Col, WT, control 12 h	Col, WT, PstDC3000 12 h	1.77	4.29E-14
GSE56094	Col, WT, control 13 h	Col, WT, PstDC3000 13 h	1.73	6.08E-14
GSE9674	Ws-4, AtMYB30 ox, control	Ws-4, AtMYB30 ox, Xanthomonas strain Xcc147 6 h	1.63	1.09E-03