Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT5G58290

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0006858: extracellular transport0.00E+00
2GO:0080180: 2-methylguanosine metabolic process0.00E+00
3GO:0006990: positive regulation of transcription from RNA polymerase II promoter involved in unfolded protein response0.00E+00
4GO:0002376: immune system process0.00E+00
5GO:0048227: plasma membrane to endosome transport0.00E+00
6GO:0006983: ER overload response0.00E+00
7GO:2000541: positive regulation of protein geranylgeranylation0.00E+00
8GO:0072722: response to amitrole0.00E+00
9GO:0006482: protein demethylation0.00E+00
10GO:0043069: negative regulation of programmed cell death7.09E-06
11GO:0015031: protein transport9.46E-05
12GO:0030968: endoplasmic reticulum unfolded protein response1.59E-04
13GO:0006481: C-terminal protein methylation1.69E-04
14GO:1990022: RNA polymerase III complex localization to nucleus1.69E-04
15GO:0010482: regulation of epidermal cell division1.69E-04
16GO:0044376: RNA polymerase II complex import to nucleus1.69E-04
17GO:0010265: SCF complex assembly1.69E-04
18GO:0051245: negative regulation of cellular defense response1.69E-04
19GO:0019567: arabinose biosynthetic process1.69E-04
20GO:0006422: aspartyl-tRNA aminoacylation1.69E-04
21GO:0009821: alkaloid biosynthetic process1.95E-04
22GO:0046685: response to arsenic-containing substance1.95E-04
23GO:0009615: response to virus2.14E-04
24GO:0045454: cell redox homeostasis2.72E-04
25GO:0019374: galactolipid metabolic process3.83E-04
26GO:0009727: detection of ethylene stimulus3.83E-04
27GO:0043066: negative regulation of apoptotic process3.83E-04
28GO:0015865: purine nucleotide transport3.83E-04
29GO:1902000: homogentisate catabolic process3.83E-04
30GO:0019441: tryptophan catabolic process to kynurenine3.83E-04
31GO:0015914: phospholipid transport3.83E-04
32GO:0007034: vacuolar transport4.71E-04
33GO:0009225: nucleotide-sugar metabolic process5.27E-04
34GO:0007188: adenylate cyclase-modulating G-protein coupled receptor signaling pathway6.25E-04
35GO:0000289: nuclear-transcribed mRNA poly(A) tail shortening6.25E-04
36GO:0002230: positive regulation of defense response to virus by host6.25E-04
37GO:0010359: regulation of anion channel activity6.25E-04
38GO:0009410: response to xenobiotic stimulus6.25E-04
39GO:0010272: response to silver ion6.25E-04
40GO:0009072: aromatic amino acid family metabolic process6.25E-04
41GO:0009863: salicylic acid mediated signaling pathway6.49E-04
42GO:0009814: defense response, incompatible interaction8.55E-04
43GO:0046902: regulation of mitochondrial membrane permeability8.93E-04
44GO:0033014: tetrapyrrole biosynthetic process8.93E-04
45GO:0006612: protein targeting to membrane8.93E-04
46GO:1902290: positive regulation of defense response to oomycetes8.93E-04
47GO:0070676: intralumenal vesicle formation8.93E-04
48GO:0006986: response to unfolded protein8.93E-04
49GO:0001676: long-chain fatty acid metabolic process8.93E-04
50GO:0006012: galactose metabolic process9.28E-04
51GO:0033358: UDP-L-arabinose biosynthetic process1.18E-03
52GO:0010363: regulation of plant-type hypersensitive response1.18E-03
53GO:0051567: histone H3-K9 methylation1.18E-03
54GO:0034613: cellular protein localization1.18E-03
55GO:0045227: capsule polysaccharide biosynthetic process1.18E-03
56GO:0033320: UDP-D-xylose biosynthetic process1.18E-03
57GO:0061025: membrane fusion1.35E-03
58GO:0018344: protein geranylgeranylation1.50E-03
59GO:0016094: polyprenol biosynthetic process1.50E-03
60GO:0007264: small GTPase mediated signal transduction1.65E-03
61GO:0030163: protein catabolic process1.75E-03
62GO:0009058: biosynthetic process1.84E-03
63GO:1902456: regulation of stomatal opening1.85E-03
64GO:0018258: protein O-linked glycosylation via hydroxyproline1.85E-03
65GO:0002238: response to molecule of fungal origin1.85E-03
66GO:0006014: D-ribose metabolic process1.85E-03
67GO:0010405: arabinogalactan protein metabolic process1.85E-03
68GO:0042732: D-xylose metabolic process1.85E-03
69GO:0000911: cytokinesis by cell plate formation2.22E-03
70GO:0009612: response to mechanical stimulus2.22E-03
71GO:0010555: response to mannitol2.22E-03
72GO:2000067: regulation of root morphogenesis2.22E-03
73GO:0010150: leaf senescence2.60E-03
74GO:0042773: ATP synthesis coupled electron transport2.61E-03
75GO:1900057: positive regulation of leaf senescence2.61E-03
76GO:0006400: tRNA modification2.61E-03
77GO:0050790: regulation of catalytic activity2.61E-03
78GO:0043090: amino acid import2.61E-03
79GO:1900056: negative regulation of leaf senescence2.61E-03
80GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process2.99E-03
81GO:0018401: peptidyl-proline hydroxylation to 4-hydroxy-L-proline3.02E-03
82GO:0009819: drought recovery3.02E-03
83GO:0043068: positive regulation of programmed cell death3.02E-03
84GO:0006605: protein targeting3.02E-03
85GO:0016559: peroxisome fission3.02E-03
86GO:0006644: phospholipid metabolic process3.02E-03
87GO:0007186: G-protein coupled receptor signaling pathway3.46E-03
88GO:0043562: cellular response to nitrogen levels3.46E-03
89GO:0009867: jasmonic acid mediated signaling pathway3.65E-03
90GO:0051865: protein autoubiquitination3.91E-03
91GO:0006783: heme biosynthetic process3.91E-03
92GO:0006631: fatty acid metabolic process4.33E-03
93GO:0048354: mucilage biosynthetic process involved in seed coat development4.38E-03
94GO:1900426: positive regulation of defense response to bacterium4.38E-03
95GO:0051707: response to other organism4.70E-03
96GO:0000103: sulfate assimilation4.87E-03
97GO:0006032: chitin catabolic process4.87E-03
98GO:0055114: oxidation-reduction process4.94E-03
99GO:0000272: polysaccharide catabolic process5.38E-03
100GO:0009750: response to fructose5.38E-03
101GO:0048765: root hair cell differentiation5.38E-03
102GO:0030148: sphingolipid biosynthetic process5.38E-03
103GO:0000038: very long-chain fatty acid metabolic process5.38E-03
104GO:0000266: mitochondrial fission5.91E-03
105GO:0006790: sulfur compound metabolic process5.91E-03
106GO:0012501: programmed cell death5.91E-03
107GO:0010200: response to chitin6.19E-03
108GO:0006486: protein glycosylation6.32E-03
109GO:0006626: protein targeting to mitochondrion6.46E-03
110GO:0006807: nitrogen compound metabolic process6.46E-03
111GO:0046854: phosphatidylinositol phosphorylation7.60E-03
112GO:0006886: intracellular protein transport7.76E-03
113GO:0034976: response to endoplasmic reticulum stress8.20E-03
114GO:0009620: response to fungus8.22E-03
115GO:0046686: response to cadmium ion8.27E-03
116GO:0000027: ribosomal large subunit assembly8.81E-03
117GO:0030150: protein import into mitochondrial matrix8.81E-03
118GO:2000377: regulation of reactive oxygen species metabolic process8.81E-03
119GO:0018105: peptidyl-serine phosphorylation9.27E-03
120GO:0016042: lipid catabolic process9.38E-03
121GO:0016575: histone deacetylation9.44E-03
122GO:0010026: trichome differentiation9.44E-03
123GO:0048278: vesicle docking1.01E-02
124GO:0016998: cell wall macromolecule catabolic process1.01E-02
125GO:0009753: response to jasmonic acid1.06E-02
126GO:0030433: ubiquitin-dependent ERAD pathway1.08E-02
127GO:0080092: regulation of pollen tube growth1.08E-02
128GO:0071369: cellular response to ethylene stimulus1.14E-02
129GO:0010087: phloem or xylem histogenesis1.36E-02
130GO:0006979: response to oxidative stress1.42E-02
131GO:0006662: glycerol ether metabolic process1.43E-02
132GO:0042752: regulation of circadian rhythm1.51E-02
133GO:0006623: protein targeting to vacuole1.58E-02
134GO:0010183: pollen tube guidance1.58E-02
135GO:0009749: response to glucose1.58E-02
136GO:0019252: starch biosynthetic process1.58E-02
137GO:0010193: response to ozone1.66E-02
138GO:0009617: response to bacterium1.86E-02
139GO:0009816: defense response to bacterium, incompatible interaction2.24E-02
140GO:0009607: response to biotic stimulus2.24E-02
141GO:0009788: negative regulation of abscisic acid-activated signaling pathway2.24E-02
142GO:0006906: vesicle fusion2.33E-02
143GO:0009627: systemic acquired resistance2.33E-02
144GO:0015995: chlorophyll biosynthetic process2.42E-02
145GO:0016311: dephosphorylation2.51E-02
146GO:0008219: cell death2.61E-02
147GO:0009832: plant-type cell wall biogenesis2.70E-02
148GO:0006499: N-terminal protein myristoylation2.79E-02
149GO:0009407: toxin catabolic process2.79E-02
150GO:0006952: defense response2.80E-02
151GO:0009723: response to ethylene2.80E-02
152GO:0010119: regulation of stomatal movement2.89E-02
153GO:0007568: aging2.89E-02
154GO:0006865: amino acid transport2.99E-02
155GO:0009853: photorespiration3.08E-02
156GO:0016192: vesicle-mediated transport3.16E-02
157GO:0034599: cellular response to oxidative stress3.18E-02
158GO:0046777: protein autophosphorylation3.21E-02
159GO:0006839: mitochondrial transport3.38E-02
160GO:0006887: exocytosis3.49E-02
161GO:0006897: endocytosis3.49E-02
162GO:0009744: response to sucrose3.69E-02
163GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process4.23E-02
164GO:0009737: response to abscisic acid4.28E-02
165GO:0042538: hyperosmotic salinity response4.34E-02
166GO:0009751: response to salicylic acid4.35E-02
167GO:0006629: lipid metabolic process4.41E-02
168GO:0009809: lignin biosynthetic process4.57E-02
169GO:0051603: proteolysis involved in cellular protein catabolic process4.68E-02
170GO:0042742: defense response to bacterium4.83E-02
171GO:0008152: metabolic process4.86E-02
RankGO TermAdjusted P value
1GO:0005092: GDP-dissociation inhibitor activity0.00E+00
2GO:0016312: inositol bisphosphate phosphatase activity0.00E+00
3GO:0051723: protein methylesterase activity0.00E+00
4GO:0016034: maleylacetoacetate isomerase activity0.00E+00
5GO:0005093: Rab GDP-dissociation inhibitor activity5.12E-06
6GO:0102391: decanoate--CoA ligase activity7.42E-05
7GO:0003978: UDP-glucose 4-epimerase activity7.42E-05
8GO:0004467: long-chain fatty acid-CoA ligase activity9.92E-05
9GO:0004815: aspartate-tRNA ligase activity1.69E-04
10GO:0004325: ferrochelatase activity1.69E-04
11GO:0004671: protein C-terminal S-isoprenylcysteine carboxyl O-methyltransferase activity1.69E-04
12GO:0016844: strictosidine synthase activity2.33E-04
13GO:0045140: inositol phosphoceramide synthase activity3.83E-04
14GO:0004061: arylformamidase activity3.83E-04
15GO:0043141: ATP-dependent 5'-3' DNA helicase activity3.83E-04
16GO:0004441: inositol-1,4-bisphosphate 1-phosphatase activity6.25E-04
17GO:0031683: G-protein beta/gamma-subunit complex binding6.25E-04
18GO:0016805: dipeptidase activity6.25E-04
19GO:0001664: G-protein coupled receptor binding6.25E-04
20GO:0008430: selenium binding6.25E-04
21GO:0047134: protein-disulfide reductase activity1.09E-03
22GO:0004301: epoxide hydrolase activity1.18E-03
23GO:0050373: UDP-arabinose 4-epimerase activity1.18E-03
24GO:0061630: ubiquitin protein ligase activity1.21E-03
25GO:0004791: thioredoxin-disulfide reductase activity1.35E-03
26GO:0015035: protein disulfide oxidoreductase activity1.35E-03
27GO:0002094: polyprenyltransferase activity1.50E-03
28GO:0017137: Rab GTPase binding1.50E-03
29GO:0004040: amidase activity1.50E-03
30GO:0005496: steroid binding1.50E-03
31GO:0005471: ATP:ADP antiporter activity1.50E-03
32GO:0016491: oxidoreductase activity1.72E-03
33GO:0047714: galactolipase activity1.85E-03
34GO:0004069: L-aspartate:2-oxoglutarate aminotransferase activity1.85E-03
35GO:0080130: L-phenylalanine:2-oxoglutarate aminotransferase activity1.85E-03
36GO:0048040: UDP-glucuronate decarboxylase activity1.85E-03
37GO:1990714: hydroxyproline O-galactosyltransferase activity1.85E-03
38GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity2.22E-03
39GO:0004747: ribokinase activity2.22E-03
40GO:0004656: procollagen-proline 4-dioxygenase activity2.22E-03
41GO:0051920: peroxiredoxin activity2.22E-03
42GO:0070403: NAD+ binding2.22E-03
43GO:0009931: calcium-dependent protein serine/threonine kinase activity2.48E-03
44GO:0004806: triglyceride lipase activity2.61E-03
45GO:0004620: phospholipase activity2.61E-03
46GO:0004683: calmodulin-dependent protein kinase activity2.61E-03
47GO:0008235: metalloexopeptidase activity2.61E-03
48GO:0052747: sinapyl alcohol dehydrogenase activity3.02E-03
49GO:0008865: fructokinase activity3.02E-03
50GO:0016209: antioxidant activity3.02E-03
51GO:0005096: GTPase activator activity3.03E-03
52GO:0032041: NAD-dependent histone deacetylase activity (H3-K14 specific)3.46E-03
53GO:0008970: phosphatidylcholine 1-acylhydrolase activity3.46E-03
54GO:0003678: DNA helicase activity3.91E-03
55GO:0047617: acyl-CoA hydrolase activity4.38E-03
56GO:0004364: glutathione transferase activity4.51E-03
57GO:0005484: SNAP receptor activity4.70E-03
58GO:0004568: chitinase activity4.87E-03
59GO:0008794: arsenate reductase (glutaredoxin) activity5.38E-03
60GO:0004177: aminopeptidase activity5.38E-03
61GO:0045551: cinnamyl-alcohol dehydrogenase activity5.91E-03
62GO:0008378: galactosyltransferase activity5.91E-03
63GO:0000175: 3'-5'-exoribonuclease activity6.46E-03
64GO:0015266: protein channel activity6.46E-03
65GO:0004535: poly(A)-specific ribonuclease activity7.02E-03
66GO:0005515: protein binding7.40E-03
67GO:0008061: chitin binding7.60E-03
68GO:0051536: iron-sulfur cluster binding8.81E-03
69GO:0031418: L-ascorbic acid binding8.81E-03
70GO:0003954: NADH dehydrogenase activity8.81E-03
71GO:0004407: histone deacetylase activity8.81E-03
72GO:0003924: GTPase activity9.73E-03
73GO:0004540: ribonuclease activity1.01E-02
74GO:0004298: threonine-type endopeptidase activity1.01E-02
75GO:0008408: 3'-5' exonuclease activity1.01E-02
76GO:0009055: electron carrier activity1.06E-02
77GO:0005509: calcium ion binding1.24E-02
78GO:0016787: hydrolase activity1.44E-02
79GO:0010181: FMN binding1.51E-02
80GO:0008137: NADH dehydrogenase (ubiquinone) activity1.66E-02
81GO:0004197: cysteine-type endopeptidase activity1.74E-02
82GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor1.82E-02
83GO:0008237: metallopeptidase activity1.99E-02
84GO:0016597: amino acid binding2.07E-02
85GO:0004601: peroxidase activity2.42E-02
86GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity2.61E-02
87GO:0030145: manganese ion binding2.89E-02
88GO:0008233: peptidase activity2.95E-02
89GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors3.08E-02
90GO:0000149: SNARE binding3.28E-02
91GO:0005516: calmodulin binding3.36E-02
92GO:0051539: 4 iron, 4 sulfur cluster binding3.38E-02
93GO:0051537: 2 iron, 2 sulfur cluster binding3.91E-02
94GO:0005198: structural molecule activity4.01E-02
95GO:0015293: symporter activity4.01E-02
96GO:0003899: DNA-directed 5'-3' RNA polymerase activity4.57E-02
97GO:0015171: amino acid transmembrane transporter activity4.91E-02
98GO:0008234: cysteine-type peptidase activity4.91E-02
99GO:0031625: ubiquitin protein ligase binding4.91E-02
RankGO TermAdjusted P value
1GO:0005783: endoplasmic reticulum2.33E-09
2GO:0005789: endoplasmic reticulum membrane4.46E-06
3GO:0005829: cytosol3.21E-05
4GO:0030014: CCR4-NOT complex1.69E-04
5GO:0005886: plasma membrane3.46E-04
6GO:0030139: endocytic vesicle6.25E-04
7GO:0005794: Golgi apparatus8.71E-04
8GO:0030658: transport vesicle membrane8.93E-04
9GO:0031461: cullin-RING ubiquitin ligase complex8.93E-04
10GO:0005968: Rab-protein geranylgeranyltransferase complex8.93E-04
11GO:0016021: integral component of membrane9.37E-04
12GO:0016020: membrane1.61E-03
13GO:0005771: multivesicular body1.85E-03
14GO:0000815: ESCRT III complex2.22E-03
15GO:0000794: condensed nuclear chromosome2.61E-03
16GO:0031305: integral component of mitochondrial inner membrane3.02E-03
17GO:0019773: proteasome core complex, alpha-subunit complex3.46E-03
18GO:0031902: late endosome membrane4.33E-03
19GO:0017119: Golgi transport complex4.87E-03
20GO:0008541: proteasome regulatory particle, lid subcomplex5.38E-03
21GO:0048471: perinuclear region of cytoplasm5.38E-03
22GO:0000502: proteasome complex6.32E-03
23GO:0005635: nuclear envelope6.77E-03
24GO:0005764: lysosome7.02E-03
25GO:0045271: respiratory chain complex I9.44E-03
26GO:0005773: vacuole9.71E-03
27GO:0005741: mitochondrial outer membrane1.01E-02
28GO:0005839: proteasome core complex1.01E-02
29GO:0005774: vacuolar membrane1.15E-02
30GO:0005744: mitochondrial inner membrane presequence translocase complex1.21E-02
31GO:0005770: late endosome1.43E-02
32GO:0009504: cell plate1.58E-02
33GO:0032580: Golgi cisterna membrane1.90E-02
34GO:0005778: peroxisomal membrane1.99E-02
35GO:0000151: ubiquitin ligase complex2.61E-02
36GO:0005819: spindle3.28E-02
37GO:0031201: SNARE complex3.49E-02
38GO:0005802: trans-Golgi network3.63E-02
39GO:0005768: endosome4.24E-02
40GO:0031966: mitochondrial membrane4.34E-02
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Gene type



Gene DE type