gene detail

Gene description

TAIR ID: AT5G55480

Short description: SHV3-like 1

Pathogen responsiveness: -0.48

General responsiveness: -1.55

Orthologous

Rice: No orthologous gene

Maize: No orthologous gene

Wheat:

TAAFFX.12868.1.A1_AT

GO biological process

guard cell morphogenesis, glycerol metabolic process, plant-type cell wall cellulose metabolic process, lipid metabolic process, trichome differentiation

GO cellular component

anchored component of membrane, anchored component of plasma membrane, plasma membrane, plasmodesma

GO molecular function

glycerophosphodiester phosphodiesterase activity

Protein domain

Pfam	PF03009, Glycerophosphoryl diester phosphodiesterase family

Metabolic pathway

Not involved in metabolic pathway

KEGG pathway

Not involved in KEGG pathway

Transcriptional regulation

No regulation information

Protein-protein interaction network

The number of partners (degree) is: 4

click to view PPI network

Coexpression network

GSE45212_WT_PSTDC3000_AVRRPT2  view
GSE13739_WT_GO  view
GSE13739_EDS16_GO  view
GSE5686_WT_GO  view
GSE56094_WT_PSTDC3000  view
GSE45212_MED14_PSTDC3000_AVRRPT2  view

Differentially expressed condition

13 conditions

Series	Control	Treatment	Log₂FC	Adj. P value
GSE17500	Col, 35S:AFB1, control 0 h	Col, 35S:AFB1, PstDC3000 24 h	-2.02	2.26E-04
GSE17500	Col, WT, control 0 h	Col, WT, PstDC3000 24 h	-2.14	8.77E-05
GSE17500	Col, miR393, control 0 h	Col, miR393, PstDC3000 24 h	-2.20	1.01E-04
GSE18978	Col, WT, control 24 h	Col, WT, PsmES4326 24 h	-2.99	1.20E-09
GSE37269	Ei2, WT, control	Ei2, WT, TEV 21 d	-1.63	6.59E-03
GSE40544	Col, WT, control	Col, WT, PstDC3000 AvrRpt2	-2.55	2.86E-06
GSE40544	Col, Sid2, control	Col, Sid2, PstDC3000 AvrRpt2	-2.65	1.93E-06
GSE45212	Col, WT, PstDC3000 AvrRpt2 0 h	Col, WT, PstDC3000 AvrRpt2 12 h	-1.71	7.51E-10
GSE45212	Col, med14, PstDC3000 AvrRpt2 0 h	Col, med14, PstDC3000 AvrRpt2 12 h	-1.51	5.11E-09
GSE50526	Col, WT, mock 24 h	Col, WT, A. brassicicola 24 h	-3.22	8.44E-05
GSE5520	Col, WT, control 24 h	Col, WT, PstDC3000 24 h	-1.58	1.04E-03
GSE56094	Col, WT, control 12 h	Col, WT, PstDC3000 12 h	-1.56	2.30E-09
GSE6556	Col, gh3.5, control	Col, gh3.5, PstDC3000 AvrRpt2 48 h	-1.64	6.76E-03