Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT5G55480

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0015813: L-glutamate transport0.00E+00
2GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation0.00E+00
3GO:0006428: isoleucyl-tRNA aminoacylation0.00E+00
4GO:0042407: cristae formation0.00E+00
5GO:0007638: mechanosensory behavior0.00E+00
6GO:0008064: regulation of actin polymerization or depolymerization0.00E+00
7GO:0070125: mitochondrial translational elongation0.00E+00
8GO:0051493: regulation of cytoskeleton organization0.00E+00
9GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway2.32E-06
10GO:0071555: cell wall organization1.99E-05
11GO:0010583: response to cyclopentenone2.86E-05
12GO:0007231: osmosensory signaling pathway3.07E-05
13GO:0033500: carbohydrate homeostasis5.52E-05
14GO:0015976: carbon utilization5.52E-05
15GO:0010067: procambium histogenesis1.74E-04
16GO:0007155: cell adhesion2.87E-04
17GO:0010729: positive regulation of hydrogen peroxide biosynthetic process2.89E-04
18GO:0006434: seryl-tRNA aminoacylation2.89E-04
19GO:0019510: S-adenosylhomocysteine catabolic process2.89E-04
20GO:0060627: regulation of vesicle-mediated transport2.89E-04
21GO:0097056: selenocysteinyl-tRNA(Sec) biosynthetic process2.89E-04
22GO:0071370: cellular response to gibberellin stimulus2.89E-04
23GO:1901599: (-)-pinoresinol biosynthetic process2.89E-04
24GO:0032544: plastid translation3.53E-04
25GO:0007267: cell-cell signaling5.05E-04
26GO:0043039: tRNA aminoacylation6.34E-04
27GO:1903338: regulation of cell wall organization or biogenesis6.34E-04
28GO:0006695: cholesterol biosynthetic process6.34E-04
29GO:0033353: S-adenosylmethionine cycle6.34E-04
30GO:0010086: embryonic root morphogenesis6.34E-04
31GO:0010069: zygote asymmetric cytokinesis in embryo sac6.34E-04
32GO:0006423: cysteinyl-tRNA aminoacylation6.34E-04
33GO:0060919: auxin influx6.34E-04
34GO:2000123: positive regulation of stomatal complex development6.34E-04
35GO:0010424: DNA methylation on cytosine within a CG sequence6.34E-04
36GO:0009773: photosynthetic electron transport in photosystem I6.77E-04
37GO:0048481: plant ovule development8.19E-04
38GO:0009817: defense response to fungus, incompatible interaction8.19E-04
39GO:0010223: secondary shoot formation9.86E-04
40GO:0090506: axillary shoot meristem initiation1.03E-03
41GO:0006421: asparaginyl-tRNA aminoacylation1.03E-03
42GO:0006696: ergosterol biosynthetic process1.03E-03
43GO:0006065: UDP-glucuronate biosynthetic process1.03E-03
44GO:0045490: pectin catabolic process1.34E-03
45GO:0007010: cytoskeleton organization1.35E-03
46GO:0006631: fatty acid metabolic process1.36E-03
47GO:0042742: defense response to bacterium1.42E-03
48GO:0015729: oxaloacetate transport1.47E-03
49GO:0006241: CTP biosynthetic process1.47E-03
50GO:0006424: glutamyl-tRNA aminoacylation1.47E-03
51GO:0071329: cellular response to sucrose stimulus1.47E-03
52GO:0006165: nucleoside diphosphate phosphorylation1.47E-03
53GO:0006228: UTP biosynthetic process1.47E-03
54GO:0043572: plastid fission1.47E-03
55GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly1.47E-03
56GO:0030245: cellulose catabolic process1.79E-03
57GO:0009294: DNA mediated transformation1.95E-03
58GO:0001944: vasculature development1.95E-03
59GO:0009765: photosynthesis, light harvesting1.97E-03
60GO:0006085: acetyl-CoA biosynthetic process1.97E-03
61GO:0006183: GTP biosynthetic process1.97E-03
62GO:2000122: negative regulation of stomatal complex development1.97E-03
63GO:2000038: regulation of stomatal complex development1.97E-03
64GO:0006546: glycine catabolic process1.97E-03
65GO:0042991: transcription factor import into nucleus1.97E-03
66GO:0009694: jasmonic acid metabolic process1.97E-03
67GO:0010037: response to carbon dioxide1.97E-03
68GO:0019676: ammonia assimilation cycle1.97E-03
69GO:0015743: malate transport1.97E-03
70GO:0019722: calcium-mediated signaling2.12E-03
71GO:0010089: xylem development2.12E-03
72GO:0016117: carotenoid biosynthetic process2.30E-03
73GO:0000271: polysaccharide biosynthetic process2.48E-03
74GO:0000413: protein peptidyl-prolyl isomerization2.48E-03
75GO:0010375: stomatal complex patterning2.52E-03
76GO:0032543: mitochondrial translation2.52E-03
77GO:0048359: mucilage metabolic process involved in seed coat development2.52E-03
78GO:0071423: malate transmembrane transport2.52E-03
79GO:0016120: carotene biosynthetic process2.52E-03
80GO:0016123: xanthophyll biosynthetic process2.52E-03
81GO:0045489: pectin biosynthetic process2.67E-03
82GO:0042254: ribosome biogenesis2.69E-03
83GO:0048831: regulation of shoot system development3.11E-03
84GO:0018258: protein O-linked glycosylation via hydroxyproline3.11E-03
85GO:0006354: DNA-templated transcription, elongation3.11E-03
86GO:0010405: arabinogalactan protein metabolic process3.11E-03
87GO:0007264: small GTPase mediated signal transduction3.52E-03
88GO:0009955: adaxial/abaxial pattern specification3.74E-03
89GO:0017148: negative regulation of translation3.74E-03
90GO:0006694: steroid biosynthetic process3.74E-03
91GO:0048509: regulation of meristem development3.74E-03
92GO:0009094: L-phenylalanine biosynthetic process3.74E-03
93GO:1901259: chloroplast rRNA processing3.74E-03
94GO:0048444: floral organ morphogenesis3.74E-03
95GO:0010555: response to mannitol3.74E-03
96GO:0008272: sulfate transport4.41E-03
97GO:0050790: regulation of catalytic activity4.41E-03
98GO:0045454: cell redox homeostasis4.77E-03
99GO:0010928: regulation of auxin mediated signaling pathway5.12E-03
100GO:0009642: response to light intensity5.12E-03
101GO:0010411: xyloglucan metabolic process5.61E-03
102GO:0009932: cell tip growth5.87E-03
103GO:0009808: lignin metabolic process5.87E-03
104GO:0016049: cell growth5.91E-03
105GO:0045337: farnesyl diphosphate biosynthetic process6.65E-03
106GO:0033384: geranyl diphosphate biosynthetic process6.65E-03
107GO:0006754: ATP biosynthetic process6.65E-03
108GO:0048589: developmental growth6.65E-03
109GO:0015780: nucleotide-sugar transport6.65E-03
110GO:0009834: plant-type secondary cell wall biogenesis6.85E-03
111GO:0043067: regulation of programmed cell death7.48E-03
112GO:0006349: regulation of gene expression by genetic imprinting7.48E-03
113GO:0016051: carbohydrate biosynthetic process7.88E-03
114GO:0009870: defense response signaling pathway, resistance gene-dependent8.33E-03
115GO:0043069: negative regulation of programmed cell death8.33E-03
116GO:0048829: root cap development8.33E-03
117GO:0006949: syncytium formation8.33E-03
118GO:0009617: response to bacterium8.68E-03
119GO:0006816: calcium ion transport9.22E-03
120GO:0018119: peptidyl-cysteine S-nitrosylation9.22E-03
121GO:0006415: translational termination9.22E-03
122GO:0009807: lignan biosynthetic process9.22E-03
123GO:0010216: maintenance of DNA methylation9.22E-03
124GO:0006790: sulfur compound metabolic process1.01E-02
125GO:0006820: anion transport1.01E-02
126GO:0006468: protein phosphorylation1.02E-02
127GO:0042546: cell wall biogenesis1.06E-02
128GO:0050826: response to freezing1.11E-02
129GO:0009725: response to hormone1.11E-02
130GO:0010020: chloroplast fission1.21E-02
131GO:0009658: chloroplast organization1.21E-02
132GO:0009934: regulation of meristem structural organization1.21E-02
133GO:0009969: xyloglucan biosynthetic process1.31E-02
134GO:0005985: sucrose metabolic process1.31E-02
135GO:0070588: calcium ion transmembrane transport1.31E-02
136GO:0046854: phosphatidylinositol phosphorylation1.31E-02
137GO:0009735: response to cytokinin1.37E-02
138GO:0009736: cytokinin-activated signaling pathway1.38E-02
139GO:0009833: plant-type primary cell wall biogenesis1.41E-02
140GO:0019344: cysteine biosynthetic process1.52E-02
141GO:0009116: nucleoside metabolic process1.52E-02
142GO:0000027: ribosomal large subunit assembly1.52E-02
143GO:0051302: regulation of cell division1.63E-02
144GO:0006418: tRNA aminoacylation for protein translation1.63E-02
145GO:0009695: jasmonic acid biosynthetic process1.63E-02
146GO:0043622: cortical microtubule organization1.63E-02
147GO:0007017: microtubule-based process1.63E-02
148GO:0031408: oxylipin biosynthetic process1.75E-02
149GO:0003333: amino acid transmembrane transport1.75E-02
150GO:0006730: one-carbon metabolic process1.86E-02
151GO:0007005: mitochondrion organization1.86E-02
152GO:0080092: regulation of pollen tube growth1.86E-02
153GO:0015979: photosynthesis1.88E-02
154GO:0042545: cell wall modification1.90E-02
155GO:0009831: plant-type cell wall modification involved in multidimensional cell growth1.98E-02
156GO:0009411: response to UV1.98E-02
157GO:0006869: lipid transport2.24E-02
158GO:0080022: primary root development2.35E-02
159GO:0042335: cuticle development2.35E-02
160GO:0010087: phloem or xylem histogenesis2.35E-02
161GO:0008360: regulation of cell shape2.48E-02
162GO:0009958: positive gravitropism2.48E-02
163GO:0010197: polar nucleus fusion2.48E-02
164GO:0006814: sodium ion transport2.61E-02
165GO:0048825: cotyledon development2.75E-02
166GO:0006810: transport2.84E-02
167GO:0071554: cell wall organization or biogenesis2.88E-02
168GO:0002229: defense response to oomycetes2.88E-02
169GO:0016132: brassinosteroid biosynthetic process2.88E-02
170GO:0005975: carbohydrate metabolic process3.00E-02
171GO:0006633: fatty acid biosynthetic process3.09E-02
172GO:1901657: glycosyl compound metabolic process3.16E-02
173GO:0009828: plant-type cell wall loosening3.31E-02
174GO:0010027: thylakoid membrane organization3.75E-02
175GO:0009788: negative regulation of abscisic acid-activated signaling pathway3.90E-02
176GO:0010029: regulation of seed germination3.90E-02
177GO:0009734: auxin-activated signaling pathway3.97E-02
178GO:0030244: cellulose biosynthetic process4.53E-02
179GO:0018298: protein-chromophore linkage4.53E-02
180GO:0006412: translation4.68E-02
181GO:0009813: flavonoid biosynthetic process4.69E-02
182GO:0009832: plant-type cell wall biogenesis4.69E-02
183GO:0010311: lateral root formation4.69E-02
184GO:0048767: root hair elongation4.69E-02
185GO:0000160: phosphorelay signal transduction system4.69E-02
RankGO TermAdjusted P value
1GO:0047450: crotonoyl-[acyl-carrier-protein] hydratase activity0.00E+00
2GO:0019955: cytokine binding0.00E+00
3GO:0045435: lycopene epsilon cyclase activity0.00E+00
4GO:0030795: jasmonate O-methyltransferase activity0.00E+00
5GO:0004822: isoleucine-tRNA ligase activity0.00E+00
6GO:0046905: phytoene synthase activity0.00E+00
7GO:0102078: methyl jasmonate methylesterase activity0.00E+00
8GO:0009885: transmembrane histidine kinase cytokinin receptor activity0.00E+00
9GO:0030598: rRNA N-glycosylase activity0.00E+00
10GO:0016767: geranylgeranyl-diphosphate geranylgeranyltransferase activity0.00E+00
11GO:0050614: delta24-sterol reductase activity0.00E+00
12GO:0051920: peroxiredoxin activity2.09E-08
13GO:0016209: antioxidant activity7.43E-08
14GO:0019843: rRNA binding1.25E-05
15GO:0047259: glucomannan 4-beta-mannosyltransferase activity2.89E-04
16GO:0004013: adenosylhomocysteinase activity2.89E-04
17GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity2.89E-04
18GO:0004828: serine-tRNA ligase activity2.89E-04
19GO:0080132: fatty acid alpha-hydroxylase activity2.89E-04
20GO:0051996: squalene synthase activity2.89E-04
21GO:0042349: guiding stereospecific synthesis activity2.89E-04
22GO:0004672: protein kinase activity3.28E-04
23GO:0016722: oxidoreductase activity, oxidizing metal ions5.05E-04
24GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds5.55E-04
25GO:0004047: aminomethyltransferase activity6.34E-04
26GO:0004817: cysteine-tRNA ligase activity6.34E-04
27GO:0019171: 3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity6.34E-04
28GO:0004310: farnesyl-diphosphate farnesyltransferase activity6.34E-04
29GO:0015367: oxoglutarate:malate antiporter activity6.34E-04
30GO:0009884: cytokinin receptor activity6.34E-04
31GO:0005089: Rho guanyl-nucleotide exchange factor activity6.77E-04
32GO:0004089: carbonate dehydratase activity8.76E-04
33GO:0070330: aromatase activity1.03E-03
34GO:0005504: fatty acid binding1.03E-03
35GO:0003913: DNA photolyase activity1.03E-03
36GO:0002161: aminoacyl-tRNA editing activity1.03E-03
37GO:0004816: asparagine-tRNA ligase activity1.03E-03
38GO:0030267: glyoxylate reductase (NADP) activity1.03E-03
39GO:0005034: osmosensor activity1.03E-03
40GO:0003979: UDP-glucose 6-dehydrogenase activity1.03E-03
41GO:0003878: ATP citrate synthase activity1.47E-03
42GO:0015131: oxaloacetate transmembrane transporter activity1.47E-03
43GO:0016149: translation release factor activity, codon specific1.47E-03
44GO:0004550: nucleoside diphosphate kinase activity1.47E-03
45GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity1.79E-03
46GO:0030570: pectate lyase activity1.95E-03
47GO:0008810: cellulase activity1.95E-03
48GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor1.97E-03
49GO:0045430: chalcone isomerase activity1.97E-03
50GO:0010328: auxin influx transmembrane transporter activity1.97E-03
51GO:0005313: L-glutamate transmembrane transporter activity1.97E-03
52GO:0004659: prenyltransferase activity1.97E-03
53GO:0047769: arogenate dehydratase activity1.97E-03
54GO:0004664: prephenate dehydratase activity1.97E-03
55GO:0008381: mechanically-gated ion channel activity2.52E-03
56GO:0018685: alkane 1-monooxygenase activity2.52E-03
57GO:0004601: peroxidase activity2.61E-03
58GO:0004674: protein serine/threonine kinase activity3.02E-03
59GO:0019901: protein kinase binding3.08E-03
60GO:1990714: hydroxyproline O-galactosyltransferase activity3.11E-03
61GO:0030599: pectinesterase activity3.20E-03
62GO:0016762: xyloglucan:xyloglucosyl transferase activity3.30E-03
63GO:0051753: mannan synthase activity3.74E-03
64GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity3.74E-03
65GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity3.74E-03
66GO:0004723: calcium-dependent protein serine/threonine phosphatase activity3.74E-03
67GO:0003886: DNA (cytosine-5-)-methyltransferase activity3.74E-03
68GO:0016759: cellulose synthase activity3.99E-03
69GO:0005200: structural constituent of cytoskeleton4.24E-03
70GO:0009881: photoreceptor activity4.41E-03
71GO:0019899: enzyme binding4.41E-03
72GO:0015140: malate transmembrane transporter activity4.41E-03
73GO:0016758: transferase activity, transferring hexosyl groups4.44E-03
74GO:0052747: sinapyl alcohol dehydrogenase activity5.12E-03
75GO:0004564: beta-fructofuranosidase activity5.12E-03
76GO:0003824: catalytic activity5.61E-03
77GO:0016798: hydrolase activity, acting on glycosyl bonds5.61E-03
78GO:0003735: structural constituent of ribosome6.36E-03
79GO:0004337: geranyltranstransferase activity6.65E-03
80GO:0008553: hydrogen-exporting ATPase activity, phosphorylative mechanism6.65E-03
81GO:0003747: translation release factor activity6.65E-03
82GO:0004575: sucrose alpha-glucosidase activity7.48E-03
83GO:0004673: protein histidine kinase activity8.33E-03
84GO:0005516: calmodulin binding8.85E-03
85GO:0004161: dimethylallyltranstransferase activity9.22E-03
86GO:0047372: acylglycerol lipase activity9.22E-03
87GO:0008378: galactosyltransferase activity1.01E-02
88GO:0000049: tRNA binding1.01E-02
89GO:0045551: cinnamyl-alcohol dehydrogenase activity1.01E-02
90GO:0004565: beta-galactosidase activity1.11E-02
91GO:0000155: phosphorelay sensor kinase activity1.11E-02
92GO:0005262: calcium channel activity1.11E-02
93GO:0003755: peptidyl-prolyl cis-trans isomerase activity1.19E-02
94GO:0051287: NAD binding1.23E-02
95GO:0004857: enzyme inhibitor activity1.52E-02
96GO:0045330: aspartyl esterase activity1.52E-02
97GO:0043424: protein histidine kinase binding1.63E-02
98GO:0008324: cation transmembrane transporter activity1.63E-02
99GO:0004176: ATP-dependent peptidase activity1.75E-02
100GO:0033612: receptor serine/threonine kinase binding1.75E-02
101GO:0019706: protein-cysteine S-palmitoyltransferase activity1.75E-02
102GO:0004650: polygalacturonase activity1.79E-02
103GO:0005524: ATP binding1.87E-02
104GO:0016757: transferase activity, transferring glycosyl groups1.98E-02
105GO:0016760: cellulose synthase (UDP-forming) activity1.98E-02
106GO:0008514: organic anion transmembrane transporter activity2.10E-02
107GO:0005102: receptor binding2.23E-02
108GO:0004812: aminoacyl-tRNA ligase activity2.23E-02
109GO:0005199: structural constituent of cell wall2.48E-02
110GO:0003924: GTPase activity2.60E-02
111GO:0004872: receptor activity2.75E-02
112GO:0048038: quinone binding2.88E-02
113GO:0008483: transaminase activity3.45E-02
114GO:0008237: metallopeptidase activity3.45E-02
115GO:0008017: microtubule binding3.55E-02
116GO:0016413: O-acetyltransferase activity3.60E-02
117GO:0016597: amino acid binding3.60E-02
118GO:0008289: lipid binding3.91E-02
119GO:0009931: calcium-dependent protein serine/threonine kinase activity4.05E-02
120GO:0102483: scopolin beta-glucosidase activity4.21E-02
121GO:0004721: phosphoprotein phosphatase activity4.21E-02
122GO:0004683: calmodulin-dependent protein kinase activity4.21E-02
123GO:0042802: identical protein binding4.30E-02
124GO:0004222: metalloendopeptidase activity4.85E-02
RankGO TermAdjusted P value
1GO:0070971: endoplasmic reticulum exit site0.00E+00
2GO:0048046: apoplast2.21E-13
3GO:0009570: chloroplast stroma9.96E-12
4GO:0009505: plant-type cell wall2.10E-10
5GO:0009941: chloroplast envelope1.21E-09
6GO:0005618: cell wall1.46E-08
7GO:0009507: chloroplast1.13E-07
8GO:0009579: thylakoid2.38E-07
9GO:0046658: anchored component of plasma membrane4.92E-07
10GO:0031225: anchored component of membrane8.82E-07
11GO:0005576: extracellular region9.50E-07
12GO:0009534: chloroplast thylakoid2.28E-06
13GO:0009535: chloroplast thylakoid membrane3.96E-06
14GO:0005886: plasma membrane1.44E-05
15GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)1.45E-05
16GO:0009543: chloroplast thylakoid lumen1.27E-04
17GO:0031977: thylakoid lumen1.80E-04
18GO:0000139: Golgi membrane2.60E-04
19GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex2.89E-04
20GO:0000428: DNA-directed RNA polymerase complex2.89E-04
21GO:0010319: stromule5.05E-04
22GO:0005794: Golgi apparatus5.39E-04
23GO:0000311: plastid large ribosomal subunit7.74E-04
24GO:0010330: cellulose synthase complex1.03E-03
25GO:0005875: microtubule associated complex1.22E-03
26GO:0005775: vacuolar lumen1.47E-03
27GO:0009346: citrate lyase complex1.47E-03
28GO:0009654: photosystem II oxygen evolving complex1.49E-03
29GO:0016020: membrane1.50E-03
30GO:0009506: plasmodesma1.96E-03
31GO:0019898: extrinsic component of membrane3.08E-03
32GO:0010168: ER body3.11E-03
33GO:0005773: vacuole3.70E-03
34GO:0010005: cortical microtubule, transverse to long axis3.74E-03
35GO:0009533: chloroplast stromal thylakoid4.41E-03
36GO:0005840: ribosome5.12E-03
37GO:0009539: photosystem II reaction center5.87E-03
38GO:0045298: tubulin complex6.65E-03
39GO:0005763: mitochondrial small ribosomal subunit6.65E-03
40GO:0000325: plant-type vacuole7.19E-03
41GO:0005774: vacuolar membrane8.12E-03
42GO:0016324: apical plasma membrane8.33E-03
43GO:0005802: trans-Golgi network9.87E-03
44GO:0030095: chloroplast photosystem II1.21E-02
45GO:0030659: cytoplasmic vesicle membrane1.21E-02
46GO:0005768: endosome1.23E-02
47GO:0022626: cytosolic ribosome1.46E-02
48GO:0005874: microtubule1.52E-02
49GO:0016021: integral component of membrane1.60E-02
50GO:0009706: chloroplast inner membrane1.96E-02
51GO:0009536: plastid2.10E-02
52GO:0010287: plastoglobule2.33E-02
53GO:0009295: nucleoid3.45E-02
54GO:0005615: extracellular space3.79E-02
Gene type



Gene DE type