co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G55480

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0002184: cytoplasmic translational termination	0.00E+00
2	GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate	0.00E+00
3	GO:0090071: negative regulation of ribosome biogenesis	0.00E+00
4	GO:0006428: isoleucyl-tRNA aminoacylation	0.00E+00
5	GO:0010059: positive regulation of atrichoblast fate specification	0.00E+00
6	GO:0042407: cristae formation	0.00E+00
7	GO:0007638: mechanosensory behavior	0.00E+00
8	GO:0017038: protein import	0.00E+00
9	GO:0018023: peptidyl-lysine trimethylation	0.00E+00
10	GO:0009658: chloroplast organization	2.44E-07
11	GO:0018026: peptidyl-lysine monomethylation	2.46E-06
12	GO:0046739: transport of virus in multicellular host	2.04E-05
13	GO:0010020: chloroplast fission	3.64E-05
14	GO:0015995: chlorophyll biosynthetic process	3.77E-05
15	GO:0042793: transcription from plastid promoter	8.74E-05
16	GO:0009640: photomorphogenesis	1.15E-04
17	GO:0042372: phylloquinone biosynthetic process	1.21E-04
18	GO:0048437: floral organ development	1.59E-04
19	GO:0010182: sugar mediated signaling pathway	1.73E-04
20	GO:0005980: glycogen catabolic process	2.29E-04
21	GO:0030198: extracellular matrix organization	2.29E-04
22	GO:0070509: calcium ion import	2.29E-04
23	GO:0010063: positive regulation of trichoblast fate specification	2.29E-04
24	GO:0010480: microsporocyte differentiation	2.29E-04
25	GO:0042759: long-chain fatty acid biosynthetic process	2.29E-04
26	GO:0042371: vitamin K biosynthetic process	2.29E-04
27	GO:1902458: positive regulation of stomatal opening	2.29E-04
28	GO:0015904: tetracycline transport	2.29E-04
29	GO:0005991: trehalose metabolic process	2.29E-04
30	GO:0010497: plasmodesmata-mediated intercellular transport	2.51E-04
31	GO:0010027: thylakoid membrane organization	3.82E-04
32	GO:2000039: regulation of trichome morphogenesis	5.10E-04
33	GO:0080175: phragmoplast microtubule organization	5.10E-04
34	GO:0006423: cysteinyl-tRNA aminoacylation	5.10E-04
35	GO:1903426: regulation of reactive oxygen species biosynthetic process	5.10E-04
36	GO:2000123: positive regulation of stomatal complex development	5.10E-04
37	GO:0010275: NAD(P)H dehydrogenase complex assembly	5.10E-04
38	GO:0009790: embryo development	6.29E-04
39	GO:2000012: regulation of auxin polar transport	6.36E-04
40	GO:0040008: regulation of growth	7.56E-04
41	GO:0070588: calcium ion transmembrane transport	8.00E-04
42	GO:0042218: 1-aminocyclopropane-1-carboxylate biosynthetic process	8.29E-04
43	GO:0030261: chromosome condensation	8.29E-04
44	GO:0010025: wax biosynthetic process	8.89E-04
45	GO:0009647: skotomorphogenesis	1.18E-03
46	GO:0010731: protein glutathionylation	1.18E-03
47	GO:0043572: plastid fission	1.18E-03
48	GO:0010071: root meristem specification	1.18E-03
49	GO:0007231: osmosensory signaling pathway	1.18E-03
50	GO:0009102: biotin biosynthetic process	1.18E-03
51	GO:0000914: phragmoplast assembly	1.57E-03
52	GO:0022622: root system development	1.57E-03
53	GO:0033500: carbohydrate homeostasis	1.57E-03
54	GO:2000038: regulation of stomatal complex development	1.57E-03
55	GO:0007112: male meiosis cytokinesis	1.57E-03
56	GO:0010109: regulation of photosynthesis	1.57E-03
57	GO:0010305: leaf vascular tissue pattern formation	1.92E-03
58	GO:0048366: leaf development	2.00E-03
59	GO:0010375: stomatal complex patterning	2.01E-03
60	GO:0000304: response to singlet oxygen	2.01E-03
61	GO:0010236: plastoquinone biosynthetic process	2.01E-03
62	GO:0045038: protein import into chloroplast thylakoid membrane	2.01E-03
63	GO:0048510: regulation of timing of transition from vegetative to reproductive phase	2.36E-03
64	GO:0009742: brassinosteroid mediated signaling pathway	2.42E-03
65	GO:0016554: cytidine to uridine editing	2.48E-03
66	GO:0018258: protein O-linked glycosylation via hydroxyproline	2.48E-03
67	GO:0033365: protein localization to organelle	2.48E-03
68	GO:0010405: arabinogalactan protein metabolic process	2.48E-03
69	GO:0006508: proteolysis	2.74E-03
70	GO:0042026: protein refolding	2.97E-03
71	GO:2000033: regulation of seed dormancy process	2.97E-03
72	GO:1901259: chloroplast rRNA processing	2.97E-03
73	GO:0006458: 'de novo' protein folding	2.97E-03
74	GO:0017148: negative regulation of translation	2.97E-03
75	GO:0009772: photosynthetic electron transport in photosystem II	3.50E-03
76	GO:0010444: guard mother cell differentiation	3.50E-03
77	GO:0032880: regulation of protein localization	3.50E-03
78	GO:0048528: post-embryonic root development	3.50E-03
79	GO:0016042: lipid catabolic process	3.76E-03
80	GO:0001522: pseudouridine synthesis	4.06E-03
81	GO:0070413: trehalose metabolism in response to stress	4.06E-03
82	GO:0006605: protein targeting	4.06E-03
83	GO:2000070: regulation of response to water deprivation	4.06E-03
84	GO:0048481: plant ovule development	4.44E-03
85	GO:0015996: chlorophyll catabolic process	4.65E-03
86	GO:0007186: G-protein coupled receptor signaling pathway	4.65E-03
87	GO:0032544: plastid translation	4.65E-03
88	GO:0010206: photosystem II repair	5.27E-03
89	GO:0048507: meristem development	5.27E-03
90	GO:0046916: cellular transition metal ion homeostasis	5.27E-03
91	GO:0000902: cell morphogenesis	5.27E-03
92	GO:0009835: fruit ripening	5.27E-03
93	GO:0009638: phototropism	5.91E-03
94	GO:0043067: regulation of programmed cell death	5.91E-03
95	GO:0006779: porphyrin-containing compound biosynthetic process	5.91E-03
96	GO:1900865: chloroplast RNA modification	5.91E-03
97	GO:0010162: seed dormancy process	6.58E-03
98	GO:0006782: protoporphyrinogen IX biosynthetic process	6.58E-03
99	GO:0045036: protein targeting to chloroplast	6.58E-03
100	GO:0009641: shade avoidance	6.58E-03
101	GO:0006631: fatty acid metabolic process	6.68E-03
102	GO:0006816: calcium ion transport	7.28E-03
103	GO:0009073: aromatic amino acid family biosynthetic process	7.28E-03
104	GO:0018119: peptidyl-cysteine S-nitrosylation	7.28E-03
105	GO:0048229: gametophyte development	7.28E-03
106	GO:0005983: starch catabolic process	8.00E-03
107	GO:0045037: protein import into chloroplast stroma	8.00E-03
108	GO:0000266: mitochondrial fission	8.00E-03
109	GO:0030048: actin filament-based movement	8.75E-03
110	GO:0010102: lateral root morphogenesis	8.75E-03
111	GO:0050826: response to freezing	8.75E-03
112	GO:0055046: microgametogenesis	8.75E-03
113	GO:0010075: regulation of meristem growth	8.75E-03
114	GO:0010207: photosystem II assembly	9.52E-03
115	GO:0009266: response to temperature stimulus	9.52E-03
116	GO:0009934: regulation of meristem structural organization	9.52E-03
117	GO:0010030: positive regulation of seed germination	1.03E-02
118	GO:0006071: glycerol metabolic process	1.11E-02
119	GO:0080147: root hair cell development	1.20E-02
120	GO:0005992: trehalose biosynthetic process	1.20E-02
121	GO:0048367: shoot system development	1.20E-02
122	GO:0009793: embryo development ending in seed dormancy	1.23E-02
123	GO:0006418: tRNA aminoacylation for protein translation	1.28E-02
124	GO:0007017: microtubule-based process	1.28E-02
125	GO:0009740: gibberellic acid mediated signaling pathway	1.31E-02
126	GO:0061077: chaperone-mediated protein folding	1.37E-02
127	GO:0031408: oxylipin biosynthetic process	1.37E-02
128	GO:0030245: cellulose catabolic process	1.46E-02
129	GO:0009693: ethylene biosynthetic process	1.56E-02
130	GO:0042127: regulation of cell proliferation	1.65E-02
131	GO:0005975: carbohydrate metabolic process	1.69E-02
132	GO:0006629: lipid metabolic process	1.70E-02
133	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	1.75E-02
134	GO:0008284: positive regulation of cell proliferation	1.75E-02
135	GO:0048364: root development	1.79E-02
136	GO:0048653: anther development	1.85E-02
137	GO:0042631: cellular response to water deprivation	1.85E-02
138	GO:0000413: protein peptidyl-prolyl isomerization	1.85E-02
139	GO:0009058: biosynthetic process	1.85E-02
140	GO:0009958: positive gravitropism	1.95E-02
141	GO:0010197: polar nucleus fusion	1.95E-02
142	GO:0009741: response to brassinosteroid	1.95E-02
143	GO:0007018: microtubule-based movement	2.05E-02
144	GO:0009646: response to absence of light	2.05E-02
145	GO:0019252: starch biosynthetic process	2.16E-02
146	GO:0009556: microsporogenesis	2.16E-02
147	GO:0016032: viral process	2.37E-02
148	GO:0032502: developmental process	2.37E-02
149	GO:0007623: circadian rhythm	2.42E-02
150	GO:0030163: protein catabolic process	2.48E-02
151	GO:0071281: cellular response to iron ion	2.48E-02
152	GO:0010090: trichome morphogenesis	2.48E-02
153	GO:0009734: auxin-activated signaling pathway	2.61E-02
154	GO:0071555: cell wall organization	2.70E-02
155	GO:0007267: cell-cell signaling	2.71E-02
156	GO:0007166: cell surface receptor signaling pathway	2.77E-02
157	GO:0000910: cytokinesis	2.83E-02
158	GO:0030154: cell differentiation	3.05E-02
159	GO:0009627: systemic acquired resistance	3.19E-02
160	GO:0010411: xyloglucan metabolic process	3.31E-02
161	GO:0009817: defense response to fungus, incompatible interaction	3.56E-02
162	GO:0009813: flavonoid biosynthetic process	3.68E-02
163	GO:0009832: plant-type cell wall biogenesis	3.68E-02
164	GO:0000160: phosphorelay signal transduction system	3.68E-02
165	GO:0048527: lateral root development	3.94E-02
166	GO:0009910: negative regulation of flower development	3.94E-02
167	GO:0045087: innate immune response	4.21E-02
168	GO:0030001: metal ion transport	4.62E-02
169	GO:0006457: protein folding	4.77E-02
170	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	4.78E-02

Rank	GO Term	Adjusted P value
1	GO:0010303: limit dextrinase activity	0.00E+00
2	GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity	0.00E+00
3	GO:0051060: pullulanase activity	0.00E+00
4	GO:0004822: isoleucine-tRNA ligase activity	0.00E+00
5	GO:0047661: amino-acid racemase activity	0.00E+00
6	GO:0008756: o-succinylbenzoate-CoA ligase activity	0.00E+00
7	GO:0005201: extracellular matrix structural constituent	0.00E+00
8	GO:0004076: biotin synthase activity	0.00E+00
9	GO:0043023: ribosomal large subunit binding	2.04E-05
10	GO:0016279: protein-lysine N-methyltransferase activity	3.72E-05
11	GO:0004176: ATP-dependent peptidase activity	8.30E-05
12	GO:0003924: GTPase activity	1.74E-04
13	GO:0008184: glycogen phosphorylase activity	2.29E-04
14	GO:0004645: phosphorylase activity	2.29E-04
15	GO:0009374: biotin binding	2.29E-04
16	GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity	2.29E-04
17	GO:0042286: glutamate-1-semialdehyde 2,1-aminomutase activity	2.29E-04
18	GO:0008237: metallopeptidase activity	3.27E-04
19	GO:0004817: cysteine-tRNA ligase activity	5.10E-04
20	GO:0008493: tetracycline transporter activity	5.10E-04
21	GO:0016630: protochlorophyllide reductase activity	5.10E-04
22	GO:0005262: calcium channel activity	6.36E-04
23	GO:0004180: carboxypeptidase activity	8.29E-04
24	GO:0070330: aromatase activity	8.29E-04
25	GO:0002161: aminoacyl-tRNA editing activity	8.29E-04
26	GO:0005504: fatty acid binding	8.29E-04
27	GO:0045174: glutathione dehydrogenase (ascorbate) activity	8.29E-04
28	GO:0016805: dipeptidase activity	8.29E-04
29	GO:0015462: ATPase-coupled protein transmembrane transporter activity	8.29E-04
30	GO:0003825: alpha,alpha-trehalose-phosphate synthase (UDP-forming) activity	1.18E-03
31	GO:0016851: magnesium chelatase activity	1.18E-03
32	GO:0008574: ATP-dependent microtubule motor activity, plus-end-directed	1.57E-03
33	GO:0045430: chalcone isomerase activity	1.57E-03
34	GO:0004659: prenyltransferase activity	1.57E-03
35	GO:0005525: GTP binding	1.58E-03
36	GO:0016788: hydrolase activity, acting on ester bonds	1.61E-03
37	GO:0018685: alkane 1-monooxygenase activity	2.01E-03
38	GO:0003989: acetyl-CoA carboxylase activity	2.01E-03
39	GO:0004556: alpha-amylase activity	2.48E-03
40	GO:0016208: AMP binding	2.48E-03
41	GO:1990714: hydroxyproline O-galactosyltransferase activity	2.48E-03
42	GO:0052689: carboxylic ester hydrolase activity	2.52E-03
43	GO:0004723: calcium-dependent protein serine/threonine phosphatase activity	2.97E-03
44	GO:0080019: fatty-acyl-CoA reductase (alcohol-forming) activity	2.97E-03
45	GO:0030170: pyridoxal phosphate binding	3.42E-03
46	GO:0016847: 1-aminocyclopropane-1-carboxylate synthase activity	4.06E-03
47	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	4.44E-03
48	GO:0046914: transition metal ion binding	4.65E-03
49	GO:0004222: metalloendopeptidase activity	4.89E-03
50	GO:0008889: glycerophosphodiester phosphodiesterase activity	5.27E-03
51	GO:0016627: oxidoreductase activity, acting on the CH-CH group of donors	5.27E-03
52	GO:0042802: identical protein binding	6.12E-03
53	GO:0005089: Rho guanyl-nucleotide exchange factor activity	7.28E-03
54	GO:0044183: protein binding involved in protein folding	7.28E-03
55	GO:0000049: tRNA binding	8.00E-03
56	GO:0005198: structural molecule activity	8.15E-03
57	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	8.46E-03
58	GO:0015266: protein channel activity	8.75E-03
59	GO:0031072: heat shock protein binding	8.75E-03
60	GO:0009982: pseudouridine synthase activity	8.75E-03
61	GO:0008083: growth factor activity	9.52E-03
62	GO:0008266: poly(U) RNA binding	9.52E-03
63	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	9.52E-03
64	GO:0003774: motor activity	9.52E-03
65	GO:0003777: microtubule motor activity	1.08E-02
66	GO:0005528: FK506 binding	1.20E-02
67	GO:0004650: polygalacturonase activity	1.27E-02
68	GO:0043424: protein histidine kinase binding	1.28E-02
69	GO:0046983: protein dimerization activity	1.36E-02
70	GO:0033612: receptor serine/threonine kinase binding	1.37E-02
71	GO:0051082: unfolded protein binding	1.40E-02
72	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	1.43E-02
73	GO:0008810: cellulase activity	1.56E-02
74	GO:0003727: single-stranded RNA binding	1.65E-02
75	GO:0004812: aminoacyl-tRNA ligase activity	1.75E-02
76	GO:0001085: RNA polymerase II transcription factor binding	1.95E-02
77	GO:0019901: protein kinase binding	2.16E-02
78	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	2.25E-02
79	GO:0016762: xyloglucan:xyloglucosyl transferase activity	2.27E-02
80	GO:0000156: phosphorelay response regulator activity	2.48E-02
81	GO:0008017: microtubule binding	2.53E-02
82	GO:0005524: ATP binding	2.53E-02
83	GO:0016791: phosphatase activity	2.60E-02
84	GO:0008483: transaminase activity	2.71E-02
85	GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity	2.71E-02
86	GO:0005200: structural constituent of cytoskeleton	2.71E-02
87	GO:0016597: amino acid binding	2.83E-02
88	GO:0016887: ATPase activity	2.94E-02
89	GO:0016798: hydrolase activity, acting on glycosyl bonds	3.31E-02
90	GO:0008236: serine-type peptidase activity	3.43E-02
91	GO:0000287: magnesium ion binding	3.67E-02
92	GO:0015238: drug transmembrane transporter activity	3.68E-02
93	GO:0001228: transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding	3.94E-02
94	GO:0003746: translation elongation factor activity	4.21E-02
95	GO:0003697: single-stranded DNA binding	4.21E-02
96	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	4.21E-02
97	GO:0051539: 4 iron, 4 sulfur cluster binding	4.62E-02
98	GO:0004364: glutathione transferase activity	4.90E-02

Rank	GO Term	Adjusted P value
1	GO:0009570: chloroplast stroma	2.25E-12
2	GO:0009507: chloroplast	4.97E-11
3	GO:0009941: chloroplast envelope	6.10E-11
4	GO:0009534: chloroplast thylakoid	4.46E-08
5	GO:0009295: nucleoid	2.15E-05
6	GO:0046658: anchored component of plasma membrane	2.63E-05
7	GO:0009508: plastid chromosome	2.98E-05
8	GO:0009533: chloroplast stromal thylakoid	1.59E-04
9	GO:0000796: condensin complex	2.29E-04
10	GO:0009535: chloroplast thylakoid membrane	4.08E-04
11	GO:0000427: plastid-encoded plastid RNA polymerase complex	5.10E-04
12	GO:0009528: plastid inner membrane	8.29E-04
13	GO:0010007: magnesium chelatase complex	8.29E-04
14	GO:0009317: acetyl-CoA carboxylase complex	8.29E-04
15	GO:0042646: plastid nucleoid	1.18E-03
16	GO:0009532: plastid stroma	1.18E-03
17	GO:0031225: anchored component of membrane	1.42E-03
18	GO:0009527: plastid outer membrane	1.57E-03
19	GO:0030286: dynein complex	1.57E-03
20	GO:0031969: chloroplast membrane	2.17E-03
21	GO:0010319: stromule	3.04E-03
22	GO:0005886: plasma membrane	3.19E-03
23	GO:0009536: plastid	3.58E-03
24	GO:0009707: chloroplast outer membrane	4.44E-03
25	GO:0042644: chloroplast nucleoid	5.27E-03
26	GO:0000418: DNA-directed RNA polymerase IV complex	6.58E-03
27	GO:0016459: myosin complex	6.58E-03
28	GO:0090404: pollen tube tip	7.28E-03
29	GO:0005576: extracellular region	9.23E-03
30	GO:0043234: protein complex	1.11E-02
31	GO:0042651: thylakoid membrane	1.28E-02
32	GO:0009706: chloroplast inner membrane	1.40E-02
33	GO:0015629: actin cytoskeleton	1.56E-02
34	GO:0005744: mitochondrial inner membrane presequence translocase complex	1.65E-02
35	GO:0009543: chloroplast thylakoid lumen	1.75E-02
36	GO:0005871: kinesin complex	1.75E-02
37	GO:0005778: peroxisomal membrane	2.71E-02
38	GO:0005615: extracellular space	2.71E-02
39	GO:0048046: apoplast	2.90E-02
40	GO:0030529: intracellular ribonucleoprotein complex	2.94E-02
41	GO:0005667: transcription factor complex	3.19E-02
42	GO:0005618: cell wall	3.40E-02
43	GO:0009579: thylakoid	4.33E-02
44	GO:0005874: microtubule	4.47E-02
45	GO:0031977: thylakoid lumen	4.76E-02