gene detail

Gene description

TAIR ID: AT5G53560

Short description: cytochrome B5 isoform E

Pathogen responsiveness: -1.50

General responsiveness: -1.63

Orthologous

Rice: No orthologous gene

Maize:

GRMZM2G074169

Wheat: No orthologous gene

GO biological process

oxidation-reduction process

GO cellular component

endoplasmic reticulum, vacuolar membrane, chloroplast thylakoid membrane, integral component of membrane, plasma membrane, endoplasmic reticulum membrane, vacuole

GO molecular function

metal ion binding, heme binding, protein binding

Protein domain

Pfam	PF00173, Cytochrome b5-like Heme/Steroid binding domain
SMART	SM01117, Cyt-b5

Metabolic pathway

PWY-3101: flavonol biosynthesis
PWY-5060: luteolin biosynthesis
PWY1F-823: leucopelargonidin and leucocyanidin biosynthesis
PWY-5391: syringetin biosynthesis
PWY-5152: leucodelphinidin biosynthesis
PWY-6787: flavonoid biosynthesis (in equisetum)

KEGG pathway

Not involved in KEGG pathway

Transcriptional regulation

Regulator:
AT5G07100, AT5G13790, AT5G22570, AT2G46130

Target:
none

Protein-protein interaction network

The number of partners (degree) is: 13 (Top20%)

click to view PPI network

Coexpression network

GSE45212_WT_PSTDC3000_AVRRPT2  view
GSE26679_WT_GC  view
GSE13739_WT_GO  view
GSE13739_EDS16_GO  view
GSE5686_WT_GO  view
GSE45212_MED14_PSTDC3000_AVRRPT2  view
GSE26679_EDR1_GC  view

Differentially expressed condition

4 conditions

Series	Control	Treatment	Log₂FC	Adj. P value
GSE45212	Col, WT, PstDC3000 AvrRpt2 0 h	Col, WT, PstDC3000 AvrRpt2 12 h	1.90	1.41E-10
GSE45212	Col, med14, PstDC3000 AvrRpt2 0 h	Col, med14, PstDC3000 AvrRpt2 12 h	1.78	4.21E-10
GSE45212	Col, med14, PstDC3000 AvrRpt2 0 h	Col, med14, PstDC3000 AvrRpt2 8 h	1.75	4.65E-10
GSE56094	Col, WT, control 8 h	Col, WT, hrpA- 8 h	1.53	2.76E-06