co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G53560

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0045047: protein targeting to ER	0.00E+00
2	GO:0019307: mannose biosynthetic process	0.00E+00
3	GO:0046686: response to cadmium ion	3.78E-11
4	GO:0034976: response to endoplasmic reticulum stress	1.53E-08
5	GO:0045454: cell redox homeostasis	7.55E-07
6	GO:0006102: isocitrate metabolic process	3.37E-06
7	GO:0006099: tricarboxylic acid cycle	3.43E-06
8	GO:0006457: protein folding	4.06E-06
9	GO:0042742: defense response to bacterium	2.24E-05
10	GO:0009697: salicylic acid biosynthetic process	5.28E-05
11	GO:0009651: response to salt stress	7.74E-05
12	GO:0009306: protein secretion	1.06E-04
13	GO:0052033: pathogen-associated molecular pattern dependent induction by symbiont of host innate immune response	1.08E-04
14	GO:0009617: response to bacterium	1.44E-04
15	GO:0006511: ubiquitin-dependent protein catabolic process	2.08E-04
16	GO:0019276: UDP-N-acetylgalactosamine metabolic process	2.13E-04
17	GO:0006047: UDP-N-acetylglucosamine metabolic process	2.13E-04
18	GO:0015760: glucose-6-phosphate transport	2.13E-04
19	GO:0006422: aspartyl-tRNA aminoacylation	2.13E-04
20	GO:0010421: hydrogen peroxide-mediated programmed cell death	2.13E-04
21	GO:1990022: RNA polymerase III complex localization to nucleus	2.13E-04
22	GO:0043687: post-translational protein modification	2.13E-04
23	GO:0051775: response to redox state	2.13E-04
24	GO:0042964: thioredoxin reduction	2.13E-04
25	GO:0046244: salicylic acid catabolic process	2.13E-04
26	GO:0044376: RNA polymerase II complex import to nucleus	2.13E-04
27	GO:0050691: regulation of defense response to virus by host	2.13E-04
28	GO:0030968: endoplasmic reticulum unfolded protein response	2.25E-04
29	GO:0015031: protein transport	2.44E-04
30	GO:0009553: embryo sac development	2.81E-04
31	GO:0009805: coumarin biosynthetic process	4.76E-04
32	GO:0009866: induced systemic resistance, ethylene mediated signaling pathway	4.76E-04
33	GO:0015712: hexose phosphate transport	4.76E-04
34	GO:0030003: cellular cation homeostasis	4.76E-04
35	GO:0033512: L-lysine catabolic process to acetyl-CoA via saccharopine	4.76E-04
36	GO:0006011: UDP-glucose metabolic process	7.74E-04
37	GO:0009871: jasmonic acid and ethylene-dependent systemic resistance, ethylene mediated signaling pathway	7.74E-04
38	GO:0032940: secretion by cell	7.74E-04
39	GO:0006013: mannose metabolic process	7.74E-04
40	GO:0015714: phosphoenolpyruvate transport	7.74E-04
41	GO:0055074: calcium ion homeostasis	7.74E-04
42	GO:0006048: UDP-N-acetylglucosamine biosynthetic process	7.74E-04
43	GO:0035436: triose phosphate transmembrane transport	7.74E-04
44	GO:0010116: positive regulation of abscisic acid biosynthetic process	1.10E-03
45	GO:0009298: GDP-mannose biosynthetic process	1.10E-03
46	GO:0002239: response to oomycetes	1.10E-03
47	GO:0072334: UDP-galactose transmembrane transport	1.10E-03
48	GO:0009846: pollen germination	1.16E-03
49	GO:0019748: secondary metabolic process	1.17E-03
50	GO:0031348: negative regulation of defense response	1.17E-03
51	GO:0010109: regulation of photosynthesis	1.47E-03
52	GO:0015713: phosphoglycerate transport	1.47E-03
53	GO:0048316: seed development	1.62E-03
54	GO:0045116: protein neddylation	1.87E-03
55	GO:0006465: signal peptide processing	1.87E-03
56	GO:0000304: response to singlet oxygen	1.87E-03
57	GO:0018279: protein N-linked glycosylation via asparagine	1.87E-03
58	GO:0006979: response to oxidative stress	1.97E-03
59	GO:0010405: arabinogalactan protein metabolic process	2.31E-03
60	GO:0018258: protein O-linked glycosylation via hydroxyproline	2.31E-03
61	GO:0047484: regulation of response to osmotic stress	2.31E-03
62	GO:0009643: photosynthetic acclimation	2.31E-03
63	GO:0030163: protein catabolic process	2.43E-03
64	GO:0042372: phylloquinone biosynthetic process	2.77E-03
65	GO:1900056: negative regulation of leaf senescence	3.26E-03
66	GO:1902074: response to salt	3.26E-03
67	GO:0009751: response to salicylic acid	3.27E-03
68	GO:0009627: systemic acquired resistance	3.43E-03
69	GO:0030091: protein repair	3.78E-03
70	GO:0006605: protein targeting	3.78E-03
71	GO:0009817: defense response to fungus, incompatible interaction	4.00E-03
72	GO:0009699: phenylpropanoid biosynthetic process	4.33E-03
73	GO:0019430: removal of superoxide radicals	4.33E-03
74	GO:0006367: transcription initiation from RNA polymerase II promoter	4.33E-03
75	GO:0010043: response to zinc ion	4.62E-03
76	GO:0015780: nucleotide-sugar transport	4.90E-03
77	GO:0098656: anion transmembrane transport	4.90E-03
78	GO:0046685: response to arsenic-containing substance	4.90E-03
79	GO:0010205: photoinhibition	5.50E-03
80	GO:0043067: regulation of programmed cell death	5.50E-03
81	GO:0030042: actin filament depolymerization	5.50E-03
82	GO:0048354: mucilage biosynthetic process involved in seed coat development	5.50E-03
83	GO:0009744: response to sucrose	6.53E-03
84	GO:0006816: calcium ion transport	6.77E-03
85	GO:0009682: induced systemic resistance	6.77E-03
86	GO:0009735: response to cytokinin	6.98E-03
87	GO:0006790: sulfur compound metabolic process	7.44E-03
88	GO:0006820: anion transport	7.44E-03
89	GO:0002213: defense response to insect	7.44E-03
90	GO:0006890: retrograde vesicle-mediated transport, Golgi to ER	7.44E-03
91	GO:0009555: pollen development	7.99E-03
92	GO:0010075: regulation of meristem growth	8.13E-03
93	GO:0006094: gluconeogenesis	8.13E-03
94	GO:0006486: protein glycosylation	8.80E-03
95	GO:0009934: regulation of meristem structural organization	8.84E-03
96	GO:0002237: response to molecule of bacterial origin	8.84E-03
97	GO:0046688: response to copper ion	9.58E-03
98	GO:0019853: L-ascorbic acid biosynthetic process	9.58E-03
99	GO:0046854: phosphatidylinositol phosphorylation	9.58E-03
100	GO:0006487: protein N-linked glycosylation	1.11E-02
101	GO:0009620: response to fungus	1.15E-02
102	GO:0006825: copper ion transport	1.19E-02
103	GO:0006874: cellular calcium ion homeostasis	1.19E-02
104	GO:0009624: response to nematode	1.26E-02
105	GO:0016226: iron-sulfur cluster assembly	1.36E-02
106	GO:0007131: reciprocal meiotic recombination	1.36E-02
107	GO:0030433: ubiquitin-dependent ERAD pathway	1.36E-02
108	GO:0032259: methylation	1.40E-02
109	GO:0010227: floral organ abscission	1.45E-02
110	GO:0010584: pollen exine formation	1.53E-02
111	GO:0019722: calcium-mediated signaling	1.53E-02
112	GO:0042147: retrograde transport, endosome to Golgi	1.62E-02
113	GO:0010118: stomatal movement	1.72E-02
114	GO:0008033: tRNA processing	1.72E-02
115	GO:0010154: fruit development	1.81E-02
116	GO:0010197: polar nucleus fusion	1.81E-02
117	GO:0048868: pollen tube development	1.81E-02
118	GO:0006468: protein phosphorylation	1.83E-02
119	GO:0009790: embryo development	1.84E-02
120	GO:0009749: response to glucose	2.00E-02
121	GO:0006413: translational initiation	2.03E-02
122	GO:0002229: defense response to oomycetes	2.10E-02
123	GO:0000302: response to reactive oxygen species	2.10E-02
124	GO:0006891: intra-Golgi vesicle-mediated transport	2.10E-02
125	GO:0009567: double fertilization forming a zygote and endosperm	2.41E-02
126	GO:0010252: auxin homeostasis	2.41E-02
127	GO:0055114: oxidation-reduction process	2.84E-02
128	GO:0006906: vesicle fusion	2.95E-02
129	GO:0016311: dephosphorylation	3.18E-02
130	GO:0016049: cell growth	3.18E-02
131	GO:0006499: N-terminal protein myristoylation	3.54E-02
132	GO:0009407: toxin catabolic process	3.54E-02
133	GO:0007568: aging	3.66E-02
134	GO:0048527: lateral root development	3.66E-02
135	GO:0045087: innate immune response	3.91E-02
136	GO:0010200: response to chitin	4.31E-02
137	GO:0050832: defense response to fungus	4.34E-02
138	GO:0016192: vesicle-mediated transport	4.38E-02
139	GO:0006887: exocytosis	4.41E-02
140	GO:0042542: response to hydrogen peroxide	4.55E-02
141	GO:0042546: cell wall biogenesis	4.81E-02
142	GO:0009644: response to high light intensity	4.94E-02

Rank	GO Term	Adjusted P value
1	GO:0004615: phosphomannomutase activity	0.00E+00
2	GO:0050220: prostaglandin-E synthase activity	0.00E+00
3	GO:0015165: pyrimidine nucleotide-sugar transmembrane transporter activity	0.00E+00
4	GO:0016312: inositol bisphosphate phosphatase activity	0.00E+00
5	GO:0004298: threonine-type endopeptidase activity	4.94E-10
6	GO:0004449: isocitrate dehydrogenase (NAD+) activity	5.93E-08
7	GO:0003756: protein disulfide isomerase activity	3.83E-06
8	GO:0008233: peptidase activity	4.89E-06
9	GO:0005460: UDP-glucose transmembrane transporter activity	1.79E-05
10	GO:0005459: UDP-galactose transmembrane transporter activity	5.28E-05
11	GO:0052630: UDP-N-acetylgalactosamine diphosphorylase activity	2.13E-04
12	GO:0008886: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (non-phosphorylating) activity	2.13E-04
13	GO:0004815: aspartate-tRNA ligase activity	2.13E-04
14	GO:0004591: oxoglutarate dehydrogenase (succinyl-transferring) activity	2.13E-04
15	GO:0003977: UDP-N-acetylglucosamine diphosphorylase activity	2.13E-04
16	GO:0048037: cofactor binding	2.13E-04
17	GO:0008909: isochorismate synthase activity	2.13E-04
18	GO:0004149: dihydrolipoyllysine-residue succinyltransferase activity	2.13E-04
19	GO:0051082: unfolded protein binding	2.94E-04
20	GO:0005509: calcium ion binding	4.44E-04
21	GO:0019781: NEDD8 activating enzyme activity	4.76E-04
22	GO:0015152: glucose-6-phosphate transmembrane transporter activity	4.76E-04
23	GO:0004775: succinate-CoA ligase (ADP-forming) activity	4.76E-04
24	GO:0004776: succinate-CoA ligase (GDP-forming) activity	4.76E-04
25	GO:0071917: triose-phosphate transmembrane transporter activity	7.74E-04
26	GO:0000030: mannosyltransferase activity	7.74E-04
27	GO:0016531: copper chaperone activity	7.74E-04
28	GO:0004148: dihydrolipoyl dehydrogenase activity	7.74E-04
29	GO:0004441: inositol-1,4-bisphosphate 1-phosphatase activity	7.74E-04
30	GO:0003983: UTP:glucose-1-phosphate uridylyltransferase activity	7.74E-04
31	GO:0004365: glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity	1.10E-03
32	GO:0004576: oligosaccharyl transferase activity	1.47E-03
33	GO:0015120: phosphoglycerate transmembrane transporter activity	1.47E-03
34	GO:0008641: small protein activating enzyme activity	1.87E-03
35	GO:0004579: dolichyl-diphosphooligosaccharide-protein glycotransferase activity	1.87E-03
36	GO:0000166: nucleotide binding	1.98E-03
37	GO:0030976: thiamine pyrophosphate binding	2.31E-03
38	GO:1990714: hydroxyproline O-galactosyltransferase activity	2.31E-03
39	GO:0008113: peptide-methionine (S)-S-oxide reductase activity	2.77E-03
40	GO:0033743: peptide-methionine (R)-S-oxide reductase activity	2.77E-03
41	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	2.77E-03
42	GO:0005261: cation channel activity	2.77E-03
43	GO:0051213: dioxygenase activity	3.07E-03
44	GO:0008320: protein transmembrane transporter activity	3.26E-03
45	GO:0005507: copper ion binding	3.70E-03
46	GO:0009055: electron carrier activity	3.72E-03
47	GO:0015288: porin activity	3.78E-03
48	GO:0008757: S-adenosylmethionine-dependent methyltransferase activity	3.81E-03
49	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	4.00E-03
50	GO:0008135: translation factor activity, RNA binding	4.33E-03
51	GO:0008308: voltage-gated anion channel activity	4.33E-03
52	GO:0050897: cobalt ion binding	4.62E-03
53	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	5.07E-03
54	GO:0003746: translation elongation factor activity	5.07E-03
55	GO:0008171: O-methyltransferase activity	6.12E-03
56	GO:0004674: protein serine/threonine kinase activity	6.47E-03
57	GO:0004129: cytochrome-c oxidase activity	6.77E-03
58	GO:0008378: galactosyltransferase activity	7.44E-03
59	GO:0051287: NAD binding	7.91E-03
60	GO:0005262: calcium channel activity	8.13E-03
61	GO:0004022: alcohol dehydrogenase (NAD) activity	8.13E-03
62	GO:0005315: inorganic phosphate transmembrane transporter activity	8.13E-03
63	GO:0004190: aspartic-type endopeptidase activity	9.58E-03
64	GO:0005217: intracellular ligand-gated ion channel activity	9.58E-03
65	GO:0004970: ionotropic glutamate receptor activity	9.58E-03
66	GO:0051536: iron-sulfur cluster binding	1.11E-02
67	GO:0004540: ribonuclease activity	1.27E-02
68	GO:0015035: protein disulfide oxidoreductase activity	1.29E-02
69	GO:0016779: nucleotidyltransferase activity	1.36E-02
70	GO:0003924: GTPase activity	1.48E-02
71	GO:0016758: transferase activity, transferring hexosyl groups	1.53E-02
72	GO:0005525: GTP binding	1.69E-02
73	GO:0016829: lyase activity	1.71E-02
74	GO:0004791: thioredoxin-disulfide reductase activity	1.91E-02
75	GO:0016853: isomerase activity	1.91E-02
76	GO:0010181: FMN binding	1.91E-02
77	GO:0015297: antiporter activity	2.08E-02
78	GO:0008237: metallopeptidase activity	2.52E-02
79	GO:0003743: translation initiation factor activity	2.55E-02
80	GO:0009931: calcium-dependent protein serine/threonine kinase activity	2.95E-02
81	GO:0004683: calmodulin-dependent protein kinase activity	3.07E-02
82	GO:0030247: polysaccharide binding	3.07E-02
83	GO:0008168: methyltransferase activity	3.24E-02
84	GO:0015238: drug transmembrane transporter activity	3.42E-02
85	GO:0016614: oxidoreductase activity, acting on CH-OH group of donors	3.66E-02
86	GO:0050660: flavin adenine dinucleotide binding	3.89E-02
87	GO:0000987: core promoter proximal region sequence-specific DNA binding	4.03E-02
88	GO:0000149: SNARE binding	4.16E-02
89	GO:0050661: NADP binding	4.29E-02
90	GO:0051539: 4 iron, 4 sulfur cluster binding	4.29E-02
91	GO:0030246: carbohydrate binding	4.40E-02
92	GO:0004364: glutathione transferase activity	4.55E-02
93	GO:0005484: SNAP receptor activity	4.68E-02
94	GO:0051537: 2 iron, 2 sulfur cluster binding	4.94E-02

Rank	GO Term	Adjusted P value
1	GO:0000327: lytic vacuole within protein storage vacuole	0.00E+00
2	GO:0005783: endoplasmic reticulum	1.40E-12
3	GO:0005788: endoplasmic reticulum lumen	8.93E-12
4	GO:0019773: proteasome core complex, alpha-subunit complex	2.82E-10
5	GO:0005839: proteasome core complex	4.94E-10
6	GO:0000502: proteasome complex	2.20E-08
7	GO:0005774: vacuolar membrane	8.22E-08
8	GO:0005829: cytosol	3.64E-07
9	GO:0045252: oxoglutarate dehydrogenase complex	2.13E-04
10	GO:0030134: ER to Golgi transport vesicle	4.76E-04
11	GO:0030176: integral component of endoplasmic reticulum membrane	7.24E-04
12	GO:0005672: transcription factor TFIIA complex	7.74E-04
13	GO:0005758: mitochondrial intermembrane space	8.90E-04
14	GO:0005773: vacuole	1.07E-03
15	GO:0030660: Golgi-associated vesicle membrane	1.47E-03
16	GO:0071556: integral component of lumenal side of endoplasmic reticulum membrane	1.47E-03
17	GO:0005739: mitochondrion	1.55E-03
18	GO:0005886: plasma membrane	1.65E-03
19	GO:0005746: mitochondrial respiratory chain	1.87E-03
20	GO:0008250: oligosaccharyltransferase complex	1.87E-03
21	GO:0032588: trans-Golgi network membrane	2.31E-03
22	GO:0005623: cell	2.71E-03
23	GO:0030173: integral component of Golgi membrane	2.77E-03
24	GO:0005762: mitochondrial large ribosomal subunit	2.77E-03
25	GO:0071458: integral component of cytoplasmic side of endoplasmic reticulum membrane	3.78E-03
26	GO:0000326: protein storage vacuole	4.33E-03
27	GO:0046930: pore complex	4.33E-03
28	GO:0031901: early endosome membrane	4.90E-03
29	GO:0031090: organelle membrane	4.90E-03
30	GO:0009507: chloroplast	5.13E-03
31	GO:0005740: mitochondrial envelope	6.12E-03
32	GO:0005765: lysosomal membrane	6.77E-03
33	GO:0005852: eukaryotic translation initiation factor 3 complex	6.77E-03
34	GO:0008541: proteasome regulatory particle, lid subcomplex	6.77E-03
35	GO:0048046: apoplast	8.87E-03
36	GO:0009536: plastid	9.75E-03
37	GO:0005747: mitochondrial respiratory chain complex I	1.08E-02
38	GO:0005834: heterotrimeric G-protein complex	1.11E-02
39	GO:0016020: membrane	1.17E-02
40	GO:0005741: mitochondrial outer membrane	1.27E-02
41	GO:0015629: actin cytoskeleton	1.45E-02
42	GO:0005759: mitochondrial matrix	1.98E-02
43	GO:0016592: mediator complex	2.20E-02
44	GO:0032580: Golgi cisterna membrane	2.41E-02
45	GO:0005794: Golgi apparatus	2.77E-02
46	GO:0022626: cytosolic ribosome	2.89E-02
47	GO:0016021: integral component of membrane	3.26E-02
48	GO:0015934: large ribosomal subunit	3.66E-02
49	GO:0080008: Cul4-RING E3 ubiquitin ligase complex	3.69E-02
50	GO:0031969: chloroplast membrane	4.17E-02
51	GO:0005789: endoplasmic reticulum membrane	4.28E-02
52	GO:0031201: SNARE complex	4.41E-02