gene detail

Gene description

TAIR ID: AT5G53200

Short description: Homeodomain-like superfamily protein

Pathogen responsiveness: -0.74

General responsiveness: -0.47

Orthologous

Rice: No orthologous gene

Maize: No orthologous gene

Wheat: No orthologous gene

GO biological process

regulation of transcription, DNA-templated, regulation of transcription from RNA polymerase II promoter, multicellular organism development, transcription, trichome branching

GO cellular component

nucleus

GO molecular function

transcription regulatory region DNA binding, protein binding, sequence-specific DNA binding, transcription factor activity, RNA polymerase II transcription factor activity, RNA polymerase II transcription factor recruiting

Protein domain

Pfam	PF00249, Myb-like DNA-binding domain
SMART	SM00717, SANT

Metabolic pathway

Not involved in metabolic pathway

KEGG pathway

Not involved in KEGG pathway

Transcriptional regulation

Regulator:
AT5G40330, AT5G12870, AT1G63650, AT2G46410, AT3G27920, AT1G24260, AT1G79840, AT5G53200, AT2G42200, AT5G41315, AT5G14750, AT4G36990, AT3G08500

Target:
AT2G02480, AT5G53200, AT5G65930, AT2G37260, AT1G79840

Protein-protein interaction network

The number of partners (degree) is: 6

click to view PPI network

Coexpression network

GSE26679_WT_GC  view
GSE13739_EDS16_GO  view
GSE26679_EDR1_GC  view

Differentially expressed condition

12 conditions

Series	Control	Treatment	Log₂FC	Adj. P value
GSE18978	Col, WT, control 24 h	Col, WT, PsmES4326 24 h	-2.71	3.33E-07
GSE26679	Col, WT, GC 0 h	Col, WT, GC 36 h	-2.49	1.36E-10
GSE26679	Col, edr1, GC 0 h	Col, edr1, GC 36 h	-2.47	1.00E-10
GSE37269	St0, WT, control	St0, WT, TEV 21 d	-2.10	2.37E-03
GSE40544	Col, WT, control	Col, WT, PstDC3000 AvrRpt2	-2.05	6.01E-03
GSE40544	Col, WT, control	Col, WT, PstDC3000 EV	-1.52	3.75E-02
GSE40544	Col, Sid2, control	Col, Sid2, PstDC3000 AvrRpt2	-1.93	9.22E-03
GSE45214	Col, WT, PstDC3000 AvrRpt2 0 h	Col, WT, PstDC3000 AvrRpt2 4 h	-1.65	5.95E-08
GSE52979	Col, WT, acetone	Col, WT, acetone flg22_2 h	-2.45	9.52E-05
GSE52979	Col, WT, oxo_C14_HSL	Col, WT, oxo_C14_HSL flg22_2 h	-2.60	4.37E-05
GSE5520	Col, WT, control 24 h	Col, WT, PstDC3000 24 h	1.66	2.40E-04
GSE58954	Col, WT, Psm AvrRpt2 0 h	Col, WT, Psm AvrRpt2 6 h	-2.33	1.74E-03