gene detail

Gene description

TAIR ID: AT5G51070

Short description: Clp ATPase

Pathogen responsiveness: 0.84

General responsiveness: -0.34

Orthologous

Rice:

OS02G0526400

Maize:

GRMZM2G149567

Wheat: No orthologous gene

GO biological process

protein hexamerization, protein metabolic process

GO cellular component

chloroplast envelope, chloroplast, chloroplast stroma

GO molecular function

ATPase activity, protein homodimerization activity, ATP binding

Protein domain

Pfam	PF10431, C-terminal, D2-small domain, of ClpB protein
Pfam	PF02861, Clp amino terminal domain, pathogenicity island component
Pfam	PF00004, ATPase family associated with various cellular activities (AAA)
Pfam	PF07724, AAA domain (Cdc48 subfamily)
SMART	SM01086, ClpB_D2-small
SMART	SM00382, AAA

Metabolic pathway

Not involved in metabolic pathway

KEGG pathway

Not involved in KEGG pathway

Transcriptional regulation

Regulator:
AT5G07100, AT5G13790, AT1G52890, AT4G27410, AT1G69600, AT3G27920, AT3G15500, AT1G24260

Target:
none

Protein-protein interaction network

The number of partners (degree) is: 2

click to view PPI network

Coexpression network

GSE26679_WT_GC  view
GSE56094_WT_HRPA-  view
GSE13739_WT_GO  view
GSE5686_WT_GO  view
GSE56094_WT_PSTDC3000  view
GSE45212_WT_PSTDC3000_AVRRPT2  view
GSE13739_EDS16_GO  view
GSE26679_EDR1_GC  view
GSE45212_MED14_PSTDC3000_AVRRPT2  view

Differentially expressed condition

39 conditions

Series	Control	Treatment	Log₂FC	Adj. P value
GSE12856	Col, WT, control	Col, WT, Bg h	1.92	3.08E-08
GSE12856	Col, ataf1, control	Col, ataf1, Bg h	2.15	8.07E-09
GSE17464	Laer, control	Laer, Alternaria brassicicola 3 d	-1.82	5.72E-11
GSE17500	Col, 35S:AFB1, control 0 h	Col, 35S:AFB1, PstDC3000 24 h	2.32	1.25E-05
GSE17500	Col, WT, control 0 h	Col, WT, PstDC3000 24 h	3.00	8.12E-07
GSE17500	Col, miR393, control 0 h	Col, miR393, PstDC3000 24 h	2.82	2.63E-06
GSE18329	Col, wrky72_1, control	Col, wrky72_1, Hpa noco2 96 h	1.55	9.23E-10
GSE18978	Col, WT, control 24 h	Col, WT, PsmES4326 24 h	3.63	1.43E-12
GSE26679	Col, WT, GC 0 h	Col, WT, GC 36 h	1.66	1.79E-07
GSE26679	Col, edr1, GC 0 h	Col, edr1, GC 18 h	1.81	4.50E-08
GSE26679	Col, edr1, GC 0 h	Col, edr1, GC 36 h	2.30	3.97E-10
GSE37269	Wt1, WT, control	Wt1, WT, TEV 21 d	-1.59	3.45E-02
GSE45212	Col, WT, PstDC3000 AvrRpt2 0 h	Col, WT, PstDC3000 AvrRpt2 12 h	3.76	4.08E-13
GSE45212	Col, WT, PstDC3000 AvrRpt2 0 h	Col, WT, PstDC3000 AvrRpt2 4 h	1.75	5.90E-08
GSE45212	Col, WT, PstDC3000 AvrRpt2 0 h	Col, WT, PstDC3000 AvrRpt2 8 h	2.81	3.52E-11
GSE45212	Col, med14, PstDC3000 AvrRpt2 0 h	Col, med14, PstDC3000 AvrRpt2 12 h	3.77	4.37E-13
GSE45212	Col, med14, PstDC3000 AvrRpt2 0 h	Col, med14, PstDC3000 AvrRpt2 4 h	3.40	2.28E-12
GSE45212	Col, med14, PstDC3000 AvrRpt2 0 h	Col, med14, PstDC3000 AvrRpt2 8 h	3.58	7.50E-13
GSE45214	Col, WT, PstDC3000 AvrRpt2 0 h	Col, WT, PstDC3000 AvrRpt2 4 h	1.59	6.79E-09
GSE45214	Col, med14, PstDC3000 AvrRpt2 0 h	Col, med14, PstDC3000 AvrRpt2 4 h	1.70	2.87E-09
GSE45214	Col, med16, PstDC3000 AvrRpt2 0 h	Col, med16, PstDC3000 AvrRpt2 4 h	3.16	9.62E-14
GSE50526	Col, WT, mock 9 h	Col, WT, A. brassicicola 9 h	2.93	2.42E-02
GSE52979	Col, WT, acetone	Col, WT, acetone flg22_2 h	1.61	1.96E-06
GSE52979	Col, WT, oxo_C14_HSL	Col, WT, oxo_C14_HSL flg22_2 h	1.63	1.36E-06
GSE5520	Col, WT, control 10 h	Col, WT, Cor- 10 h	1.65	1.20E-02
GSE5520	Col, WT, control 24 h	Col, WT, PstDC3000 24 h	1.90	9.24E-03
GSE56094	Col, WT, control 10 h	Col, WT, PstDC3000 10 h	2.92	8.83E-12
GSE56094	Col, WT, control 11 h	Col, WT, PstDC3000 11 h	2.47	5.24E-09
GSE56094	Col, WT, control 12 h	Col, WT, PstDC3000 12 h	2.73	2.05E-10
GSE56094	Col, WT, control 13 h	Col, WT, PstDC3000 13 h	3.25	1.41E-13
GSE56094	Col, WT, control 13 h	Col, WT, hrpA- 13 h	1.74	1.23E-04
GSE56094	Col, WT, control 8 h	Col, WT, PstDC3000 8 h	2.18	2.64E-07
GSE56094	Col, WT, control 9 h	Col, WT, PstDC3000 9 h	1.74	3.49E-05
GSE5615	Col, WT, water 4 h	Col, WT, HrpZ 4 h	2.12	7.88E-12
GSE5616	Col, WT, water 12 h	Col, WT, P. infestans 12 h	1.62	5.38E-06
GSE5616	Col, WT, water 6 h	Col, WT, P. infestans 6 h	2.23	6.25E-08
GSE58954	Col, WT, Psm AvrRpt2 0 h	Col, WT, Psm AvrRpt2 6 h	1.89	2.77E-02
GSE6176	Col, WT, control 12 h	Col, WT, PstDC3000 12 h	1.51	3.21E-03
GSE6556	Col, gh3.5, control	Col, gh3.5, PstDC3000 AvrRpt2 48 h	1.79	1.18E-03