Gene: AT5G48910
Gene description
TAIR ID: AT5G48910
Short description: Pentatricopeptide repeat (PPR) superfamily protein
Pathogen responsiveness: -0.71
General responsiveness: -1.09
GO biological process
RNA modification
GO cellular component
chloroplast
GO molecular function
zinc ion binding, endonuclease activity, RNA binding
Protein domain
| Pfam | PF13041, PPR repeat family |
| Pfam | PF01535, PPR repeat |
| Pfam | PF14432, DYW family of nucleic acid deaminases |
KEGG pathway
Not involved in KEGG pathway
Protein-protein interaction network
No Interactor
Coexpression network
Differentially expressed condition 
13 conditions
| Series | Control | Treatment | Log2FC | Adj. P value |
|---|---|---|---|---|
| GSE12856 | Col, ataf1, control | Col, ataf1, Bg h | -1.60 | 7.75E-07 |
| GSE17464 | Penta, control | Penta, Flg22 2 h | -1.51 | 1.72E-06 |
| GSE18978 | Col, WT, control 24 h | Col, WT, PsmES4326 24 h | -1.89 | 5.95E-08 |
| GSE40544 | Col, WT, control | Col, WT, PstDC3000 EV | -1.54 | 2.81E-05 |
| GSE45212 | Col, WT, PstDC3000 AvrRpt2 0 h | Col, WT, PstDC3000 AvrRpt2 12 h | -2.56 | 1.92E-13 |
| GSE45212 | Col, WT, PstDC3000 AvrRpt2 0 h | Col, WT, PstDC3000 AvrRpt2 8 h | -1.95 | 1.33E-11 |
| GSE45212 | Col, med14, PstDC3000 AvrRpt2 0 h | Col, med14, PstDC3000 AvrRpt2 12 h | -1.92 | 1.23E-11 |
| GSE45212 | Col, med14, PstDC3000 AvrRpt2 0 h | Col, med14, PstDC3000 AvrRpt2 4 h | -2.09 | 4.69E-12 |
| GSE45212 | Col, med14, PstDC3000 AvrRpt2 0 h | Col, med14, PstDC3000 AvrRpt2 8 h | -2.39 | 4.54E-13 |
| GSE45214 | Col, med16, PstDC3000 AvrRpt2 0 h | Col, med16, PstDC3000 AvrRpt2 4 h | -2.48 | 5.41E-14 |
| GSE5520 | Col, WT, control 10 h | Col, WT, Cor- 10 h | -1.76 | 7.41E-05 |
| GSE5520 | Col, WT, control 7 h | Col, WT, PstDC3000 7 h | -1.66 | 1.09E-05 |
| GSE58954 | Col, WT, Psm AvrRpt2 0 h | Col, WT, Psm AvrRpt2 6 h | -1.74 | 3.45E-03 |
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