co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G48910

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0002184: cytoplasmic translational termination	0.00E+00
2	GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate	0.00E+00
3	GO:0033494: ferulate metabolic process	0.00E+00
4	GO:0006428: isoleucyl-tRNA aminoacylation	0.00E+00
5	GO:0045176: apical protein localization	0.00E+00
6	GO:0016553: base conversion or substitution editing	0.00E+00
7	GO:0006399: tRNA metabolic process	0.00E+00
8	GO:0006412: translation	7.36E-07
9	GO:0009735: response to cytokinin	7.79E-07
10	GO:0032544: plastid translation	1.50E-06
11	GO:0010236: plastoquinone biosynthetic process	2.35E-05
12	GO:0000413: protein peptidyl-prolyl isomerization	4.88E-05
13	GO:0009657: plastid organization	1.09E-04
14	GO:0071588: hydrogen peroxide mediated signaling pathway	1.31E-04
15	GO:0010729: positive regulation of hydrogen peroxide biosynthetic process	1.31E-04
16	GO:0043489: RNA stabilization	1.31E-04
17	GO:0000481: maturation of 5S rRNA	1.31E-04
18	GO:0042371: vitamin K biosynthetic process	1.31E-04
19	GO:0034337: RNA folding	1.31E-04
20	GO:0009773: photosynthetic electron transport in photosystem I	2.24E-04
21	GO:0080165: callose deposition in phloem sieve plate	3.03E-04
22	GO:0034755: iron ion transmembrane transport	3.03E-04
23	GO:0042254: ribosome biogenesis	4.92E-04
24	GO:0042742: defense response to bacterium	4.98E-04
25	GO:0006954: inflammatory response	4.99E-04
26	GO:0006518: peptide metabolic process	4.99E-04
27	GO:0009800: cinnamic acid biosynthetic process	7.14E-04
28	GO:2001141: regulation of RNA biosynthetic process	7.14E-04
29	GO:0015979: photosynthesis	8.10E-04
30	GO:0045454: cell redox homeostasis	8.70E-04
31	GO:0009409: response to cold	9.08E-04
32	GO:0045727: positive regulation of translation	9.47E-04
33	GO:0015994: chlorophyll metabolic process	9.47E-04
34	GO:2000122: negative regulation of stomatal complex development	9.47E-04
35	GO:0010037: response to carbon dioxide	9.47E-04
36	GO:0015976: carbon utilization	9.47E-04
37	GO:0006869: lipid transport	9.98E-04
38	GO:0006564: L-serine biosynthetic process	1.20E-03
39	GO:0006461: protein complex assembly	1.20E-03
40	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	1.47E-03
41	GO:0016554: cytidine to uridine editing	1.47E-03
42	GO:0006559: L-phenylalanine catabolic process	1.47E-03
43	GO:0048827: phyllome development	1.47E-03
44	GO:0042549: photosystem II stabilization	1.47E-03
45	GO:0010027: thylakoid membrane organization	1.58E-03
46	GO:0042372: phylloquinone biosynthetic process	1.76E-03
47	GO:0010189: vitamin E biosynthetic process	1.76E-03
48	GO:0010019: chloroplast-nucleus signaling pathway	1.76E-03
49	GO:0048444: floral organ morphogenesis	1.76E-03
50	GO:0010555: response to mannitol	1.76E-03
51	GO:0009817: defense response to fungus, incompatible interaction	2.05E-03
52	GO:0009395: phospholipid catabolic process	2.06E-03
53	GO:0009772: photosynthetic electron transport in photosystem II	2.06E-03
54	GO:0010196: nonphotochemical quenching	2.06E-03
55	GO:0006400: tRNA modification	2.06E-03
56	GO:0009631: cold acclimation	2.37E-03
57	GO:0009642: response to light intensity	2.39E-03
58	GO:0030091: protein repair	2.39E-03
59	GO:0032508: DNA duplex unwinding	2.39E-03
60	GO:0009637: response to blue light	2.59E-03
61	GO:0034599: cellular response to oxidative stress	2.70E-03
62	GO:0071482: cellular response to light stimulus	2.73E-03
63	GO:0017004: cytochrome complex assembly	2.73E-03
64	GO:0009658: chloroplast organization	2.90E-03
65	GO:0010206: photosystem II repair	3.08E-03
66	GO:0010114: response to red light	3.32E-03
67	GO:1900865: chloroplast RNA modification	3.46E-03
68	GO:0006415: translational termination	4.24E-03
69	GO:0043085: positive regulation of catalytic activity	4.24E-03
70	GO:0006879: cellular iron ion homeostasis	4.24E-03
71	GO:0006352: DNA-templated transcription, initiation	4.24E-03
72	GO:0006820: anion transport	4.65E-03
73	GO:0005986: sucrose biosynthetic process	5.08E-03
74	GO:0006006: glucose metabolic process	5.08E-03
75	GO:0010229: inflorescence development	5.08E-03
76	GO:0010143: cutin biosynthetic process	5.52E-03
77	GO:0019253: reductive pentose-phosphate cycle	5.52E-03
78	GO:0010207: photosystem II assembly	5.52E-03
79	GO:0010540: basipetal auxin transport	5.52E-03
80	GO:0009934: regulation of meristem structural organization	5.52E-03
81	GO:0005985: sucrose metabolic process	5.97E-03
82	GO:0006396: RNA processing	6.54E-03
83	GO:0019344: cysteine biosynthetic process	6.91E-03
84	GO:0000027: ribosomal large subunit assembly	6.91E-03
85	GO:0051302: regulation of cell division	7.40E-03
86	GO:0006418: tRNA aminoacylation for protein translation	7.40E-03
87	GO:0009768: photosynthesis, light harvesting in photosystem I	7.40E-03
88	GO:0061077: chaperone-mediated protein folding	7.91E-03
89	GO:0016226: iron-sulfur cluster assembly	8.42E-03
90	GO:0042744: hydrogen peroxide catabolic process	9.06E-03
91	GO:0009790: embryo development	9.28E-03
92	GO:0019722: calcium-mediated signaling	9.49E-03
93	GO:0009306: protein secretion	9.49E-03
94	GO:0006662: glycerol ether metabolic process	1.12E-02
95	GO:0048825: cotyledon development	1.24E-02
96	GO:0002229: defense response to oomycetes	1.30E-02
97	GO:0000302: response to reactive oxygen species	1.30E-02
98	GO:0007267: cell-cell signaling	1.55E-02
99	GO:0009911: positive regulation of flower development	1.68E-02
100	GO:0006457: protein folding	1.79E-02
101	GO:0048481: plant ovule development	2.03E-02
102	GO:0018298: protein-chromophore linkage	2.03E-02
103	GO:0000160: phosphorelay signal transduction system	2.11E-02
104	GO:0009407: toxin catabolic process	2.18E-02
105	GO:0010218: response to far red light	2.18E-02
106	GO:0010119: regulation of stomatal movement	2.25E-02
107	GO:0007568: aging	2.25E-02
108	GO:0045087: innate immune response	2.41E-02
109	GO:0051707: response to other organism	2.88E-02
110	GO:0032259: methylation	2.99E-02
111	GO:0016042: lipid catabolic process	3.04E-02
112	GO:0009636: response to toxic substance	3.13E-02
113	GO:0006979: response to oxidative stress	3.17E-02
114	GO:0042538: hyperosmotic salinity response	3.39E-02
115	GO:0006364: rRNA processing	3.56E-02
116	GO:0006813: potassium ion transport	3.56E-02
117	GO:0009736: cytokinin-activated signaling pathway	3.56E-02
118	GO:0055114: oxidation-reduction process	3.89E-02
119	GO:0006096: glycolytic process	4.01E-02
120	GO:0018105: peptidyl-serine phosphorylation	4.67E-02

Rank	GO Term	Adjusted P value
1	GO:0050518: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity	0.00E+00
2	GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity	0.00E+00
3	GO:0004822: isoleucine-tRNA ligase activity	0.00E+00
4	GO:0102550: 2-methyl-6-geranylgeranyl-1,4-benzoquinol methyltransferase activity	0.00E+00
5	GO:0051920: peroxiredoxin activity	4.03E-07
6	GO:0019843: rRNA binding	4.48E-07
7	GO:0016209: antioxidant activity	1.02E-06
8	GO:0003735: structural constituent of ribosome	2.98E-06
9	GO:0004659: prenyltransferase activity	1.44E-05
10	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	3.60E-05
11	GO:0004723: calcium-dependent protein serine/threonine phosphatase activity	4.98E-05
12	GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity	1.31E-04
13	GO:0051741: 2-methyl-6-phytyl-1,4-benzoquinone methyltransferase activity	1.31E-04
14	GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity	3.03E-04
15	GO:0047746: chlorophyllase activity	3.03E-04
16	GO:0004617: phosphoglycerate dehydrogenase activity	3.03E-04
17	GO:0008266: poly(U) RNA binding	3.34E-04
18	GO:0004601: peroxidase activity	4.78E-04
19	GO:0050734: hydroxycinnamoyltransferase activity	4.99E-04
20	GO:0045548: phenylalanine ammonia-lyase activity	4.99E-04
21	GO:0002161: aminoacyl-tRNA editing activity	4.99E-04
22	GO:0030267: glyoxylate reductase (NADP) activity	4.99E-04
23	GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	4.99E-04
24	GO:0016149: translation release factor activity, codon specific	7.14E-04
25	GO:0043023: ribosomal large subunit binding	7.14E-04
26	GO:0008097: 5S rRNA binding	7.14E-04
27	GO:0016987: sigma factor activity	9.47E-04
28	GO:0001053: plastid sigma factor activity	9.47E-04
29	GO:0005319: lipid transporter activity	9.47E-04
30	GO:0008381: mechanically-gated ion channel activity	1.20E-03
31	GO:0004040: amidase activity	1.20E-03
32	GO:0004130: cytochrome-c peroxidase activity	1.47E-03
33	GO:0016688: L-ascorbate peroxidase activity	1.47E-03
34	GO:0008200: ion channel inhibitor activity	1.47E-03
35	GO:0033743: peptide-methionine (R)-S-oxide reductase activity	1.76E-03
36	GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity	1.76E-03
37	GO:0016157: sucrose synthase activity	1.76E-03
38	GO:0004222: metalloendopeptidase activity	2.26E-03
39	GO:0004033: aldo-keto reductase (NADP) activity	2.39E-03
40	GO:0046872: metal ion binding	2.71E-03
41	GO:0016788: hydrolase activity, acting on ester bonds	2.97E-03
42	GO:0003747: translation release factor activity	3.08E-03
43	GO:0005381: iron ion transmembrane transporter activity	3.46E-03
44	GO:0008047: enzyme activator activity	3.84E-03
45	GO:0051287: NAD binding	4.02E-03
46	GO:0015386: potassium:proton antiporter activity	4.24E-03
47	GO:0000049: tRNA binding	4.65E-03
48	GO:0004089: carbonate dehydratase activity	5.08E-03
49	GO:0031072: heat shock protein binding	5.08E-03
50	GO:0031409: pigment binding	6.43E-03
51	GO:0005528: FK506 binding	6.91E-03
52	GO:0051536: iron-sulfur cluster binding	6.91E-03
53	GO:0015079: potassium ion transmembrane transporter activity	7.40E-03
54	GO:0008324: cation transmembrane transporter activity	7.40E-03
55	GO:0030570: pectate lyase activity	8.95E-03
56	GO:0008289: lipid binding	9.50E-03
57	GO:0047134: protein-disulfide reductase activity	1.00E-02
58	GO:0004812: aminoacyl-tRNA ligase activity	1.00E-02
59	GO:0008080: N-acetyltransferase activity	1.12E-02
60	GO:0050662: coenzyme binding	1.18E-02
61	GO:0004791: thioredoxin-disulfide reductase activity	1.18E-02
62	GO:0000156: phosphorelay response regulator activity	1.42E-02
63	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	1.42E-02
64	GO:0016759: cellulose synthase activity	1.49E-02
65	GO:0003729: mRNA binding	1.51E-02
66	GO:0016722: oxidoreductase activity, oxidizing metal ions	1.55E-02
67	GO:0008237: metallopeptidase activity	1.55E-02
68	GO:0016597: amino acid binding	1.62E-02
69	GO:0008168: methyltransferase activity	1.64E-02
70	GO:0016168: chlorophyll binding	1.75E-02
71	GO:0009931: calcium-dependent protein serine/threonine kinase activity	1.82E-02
72	GO:0004683: calmodulin-dependent protein kinase activity	1.89E-02
73	GO:0008757: S-adenosylmethionine-dependent methyltransferase activity	1.96E-02
74	GO:0008236: serine-type peptidase activity	1.96E-02
75	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	2.03E-02
76	GO:0052689: carboxylic ester hydrolase activity	2.34E-02
77	GO:0003993: acid phosphatase activity	2.48E-02
78	GO:0050661: NADP binding	2.64E-02
79	GO:0051539: 4 iron, 4 sulfur cluster binding	2.64E-02
80	GO:0004871: signal transducer activity	2.66E-02
81	GO:0004364: glutathione transferase activity	2.80E-02
82	GO:0005509: calcium ion binding	2.84E-02
83	GO:0051537: 2 iron, 2 sulfur cluster binding	3.05E-02
84	GO:0009055: electron carrier activity	3.35E-02
85	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	3.56E-02
86	GO:0003777: microtubule motor activity	3.83E-02
87	GO:0030599: pectinesterase activity	4.39E-02
88	GO:0051082: unfolded protein binding	4.58E-02
89	GO:0015035: protein disulfide oxidoreductase activity	4.67E-02

Rank	GO Term	Adjusted P value
1	GO:0009507: chloroplast	7.07E-32
2	GO:0009570: chloroplast stroma	1.02E-25
3	GO:0009941: chloroplast envelope	8.49E-24
4	GO:0009579: thylakoid	3.19E-15
5	GO:0009535: chloroplast thylakoid membrane	1.30E-14
6	GO:0031977: thylakoid lumen	7.95E-12
7	GO:0009543: chloroplast thylakoid lumen	1.21E-11
8	GO:0009534: chloroplast thylakoid	1.16E-08
9	GO:0005840: ribosome	1.84E-06
10	GO:0048046: apoplast	5.86E-06
11	GO:0009533: chloroplast stromal thylakoid	6.70E-05
12	GO:0010319: stromule	1.11E-04
13	GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex	1.31E-04
14	GO:0043190: ATP-binding cassette (ABC) transporter complex	1.31E-04
15	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	1.34E-04
16	GO:0000311: plastid large ribosomal subunit	2.58E-04
17	GO:0030095: chloroplast photosystem II	3.34E-04
18	GO:0010287: plastoglobule	1.05E-03
19	GO:0046658: anchored component of plasma membrane	2.38E-03
20	GO:0009536: plastid	2.95E-03
21	GO:0031969: chloroplast membrane	3.81E-03
22	GO:0032040: small-subunit processome	4.65E-03
23	GO:0030076: light-harvesting complex	5.97E-03
24	GO:0009706: chloroplast inner membrane	6.35E-03
25	GO:0009654: photosystem II oxygen evolving complex	7.40E-03
26	GO:0005618: cell wall	7.51E-03
27	GO:0015935: small ribosomal subunit	7.91E-03
28	GO:0005770: late endosome	1.12E-02
29	GO:0009522: photosystem I	1.18E-02
30	GO:0009523: photosystem II	1.24E-02
31	GO:0019898: extrinsic component of membrane	1.24E-02
32	GO:0030529: intracellular ribonucleoprotein complex	1.68E-02
33	GO:0016020: membrane	1.87E-02
34	GO:0009707: chloroplast outer membrane	2.03E-02
35	GO:0005874: microtubule	2.04E-02
36	GO:0031225: anchored component of membrane	2.27E-02
37	GO:0005819: spindle	2.56E-02