co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G48910

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0019685: photosynthesis, dark reaction	0.00E+00
2	GO:0044154: histone H3-K14 acetylation	0.00E+00
3	GO:0009583: detection of light stimulus	0.00E+00
4	GO:0045176: apical protein localization	0.00E+00
5	GO:0071000: response to magnetism	0.00E+00
6	GO:0036172: thiamine salvage	0.00E+00
7	GO:0000372: Group I intron splicing	0.00E+00
8	GO:0043972: histone H3-K23 acetylation	0.00E+00
9	GO:0080127: fruit septum development	0.00E+00
10	GO:0006003: fructose 2,6-bisphosphate metabolic process	0.00E+00
11	GO:0043087: regulation of GTPase activity	3.40E-04
12	GO:0043609: regulation of carbon utilization	3.40E-04
13	GO:0006436: tryptophanyl-tRNA aminoacylation	3.40E-04
14	GO:0090548: response to nitrate starvation	3.40E-04
15	GO:0000066: mitochondrial ornithine transport	3.40E-04
16	GO:0034757: negative regulation of iron ion transport	3.40E-04
17	GO:0072684: mitochondrial tRNA 3'-trailer cleavage, endonucleolytic	3.40E-04
18	GO:0043971: histone H3-K18 acetylation	3.40E-04
19	GO:1902025: nitrate import	3.40E-04
20	GO:0072387: flavin adenine dinucleotide metabolic process	3.40E-04
21	GO:0071482: cellular response to light stimulus	4.45E-04
22	GO:0000373: Group II intron splicing	5.35E-04
23	GO:0009639: response to red or far red light	6.29E-04
24	GO:0010018: far-red light signaling pathway	6.32E-04
25	GO:0010343: singlet oxygen-mediated programmed cell death	7.40E-04
26	GO:1901529: positive regulation of anion channel activity	7.40E-04
27	GO:0006435: threonyl-tRNA aminoacylation	7.40E-04
28	GO:0010617: circadian regulation of calcium ion oscillation	7.40E-04
29	GO:0010271: regulation of chlorophyll catabolic process	7.40E-04
30	GO:0099402: plant organ development	7.40E-04
31	GO:0010582: floral meristem determinacy	9.69E-04
32	GO:0045493: xylan catabolic process	1.20E-03
33	GO:0030029: actin filament-based process	1.20E-03
34	GO:0034414: tRNA 3'-trailer cleavage, endonucleolytic	1.20E-03
35	GO:0045910: negative regulation of DNA recombination	1.20E-03
36	GO:1902448: positive regulation of shade avoidance	1.20E-03
37	GO:0006000: fructose metabolic process	1.20E-03
38	GO:0080117: secondary growth	1.20E-03
39	GO:1901672: positive regulation of systemic acquired resistance	1.20E-03
40	GO:0042780: tRNA 3'-end processing	1.20E-03
41	GO:0010540: basipetal auxin transport	1.23E-03
42	GO:0042753: positive regulation of circadian rhythm	1.54E-03
43	GO:0005992: trehalose biosynthetic process	1.70E-03
44	GO:2001141: regulation of RNA biosynthetic process	1.72E-03
45	GO:0009102: biotin biosynthetic process	1.72E-03
46	GO:0051639: actin filament network formation	1.72E-03
47	GO:0034059: response to anoxia	1.72E-03
48	GO:0010239: chloroplast mRNA processing	1.72E-03
49	GO:0009800: cinnamic acid biosynthetic process	1.72E-03
50	GO:1901332: negative regulation of lateral root development	1.72E-03
51	GO:0009793: embryo development ending in seed dormancy	2.03E-03
52	GO:0009956: radial pattern formation	2.31E-03
53	GO:0051764: actin crosslink formation	2.31E-03
54	GO:0006021: inositol biosynthetic process	2.31E-03
55	GO:1902347: response to strigolactone	2.31E-03
56	GO:0031365: N-terminal protein amino acid modification	2.96E-03
57	GO:0009229: thiamine diphosphate biosynthetic process	2.96E-03
58	GO:0010158: abaxial cell fate specification	2.96E-03
59	GO:0009696: salicylic acid metabolic process	2.96E-03
60	GO:0080110: sporopollenin biosynthetic process	2.96E-03
61	GO:0010117: photoprotection	2.96E-03
62	GO:0046283: anthocyanin-containing compound metabolic process	2.96E-03
63	GO:0048827: phyllome development	3.65E-03
64	GO:0016554: cytidine to uridine editing	3.65E-03
65	GO:0009920: cell plate formation involved in plant-type cell wall biogenesis	3.65E-03
66	GO:1901371: regulation of leaf morphogenesis	3.65E-03
67	GO:0006559: L-phenylalanine catabolic process	3.65E-03
68	GO:0060918: auxin transport	3.65E-03
69	GO:0048831: regulation of shoot system development	3.65E-03
70	GO:0009228: thiamine biosynthetic process	3.65E-03
71	GO:0003006: developmental process involved in reproduction	3.65E-03
72	GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity	4.40E-03
73	GO:0010310: regulation of hydrogen peroxide metabolic process	4.40E-03
74	GO:0010244: response to low fluence blue light stimulus by blue low-fluence system	4.40E-03
75	GO:0048509: regulation of meristem development	4.40E-03
76	GO:0007264: small GTPase mediated signal transduction	4.45E-03
77	GO:0009610: response to symbiotic fungus	5.19E-03
78	GO:0010050: vegetative phase change	5.19E-03
79	GO:0010098: suspensor development	5.19E-03
80	GO:0051510: regulation of unidimensional cell growth	5.19E-03
81	GO:0000105: histidine biosynthetic process	6.03E-03
82	GO:0048564: photosystem I assembly	6.03E-03
83	GO:0070413: trehalose metabolism in response to stress	6.03E-03
84	GO:0009850: auxin metabolic process	6.03E-03
85	GO:0009416: response to light stimulus	6.57E-03
86	GO:0006002: fructose 6-phosphate metabolic process	6.92E-03
87	GO:0009827: plant-type cell wall modification	6.92E-03
88	GO:0009657: plastid organization	6.92E-03
89	GO:0032544: plastid translation	6.92E-03
90	GO:0044030: regulation of DNA methylation	6.92E-03
91	GO:0048507: meristem development	7.85E-03
92	GO:0030244: cellulose biosynthetic process	7.88E-03
93	GO:0000160: phosphorelay signal transduction system	8.28E-03
94	GO:0016573: histone acetylation	8.82E-03
95	GO:1900426: positive regulation of defense response to bacterium	8.82E-03
96	GO:0040008: regulation of growth	8.82E-03
97	GO:0009638: phototropism	8.82E-03
98	GO:1900865: chloroplast RNA modification	8.82E-03
99	GO:0016571: histone methylation	8.82E-03
100	GO:0009451: RNA modification	9.65E-03
101	GO:0006298: mismatch repair	9.84E-03
102	GO:0006259: DNA metabolic process	9.84E-03
103	GO:0010192: mucilage biosynthetic process	9.84E-03
104	GO:0006535: cysteine biosynthetic process from serine	9.84E-03
105	GO:0006265: DNA topological change	1.09E-02
106	GO:0006415: translational termination	1.09E-02
107	GO:0006352: DNA-templated transcription, initiation	1.09E-02
108	GO:0006790: sulfur compound metabolic process	1.20E-02
109	GO:0010114: response to red light	1.29E-02
110	GO:0010229: inflorescence development	1.31E-02
111	GO:0010075: regulation of meristem growth	1.31E-02
112	GO:0009785: blue light signaling pathway	1.31E-02
113	GO:0009266: response to temperature stimulus	1.43E-02
114	GO:0048467: gynoecium development	1.43E-02
115	GO:0010020: chloroplast fission	1.43E-02
116	GO:0009933: meristem structural organization	1.43E-02
117	GO:0009636: response to toxic substance	1.45E-02
118	GO:0009965: leaf morphogenesis	1.45E-02
119	GO:0046854: phosphatidylinositol phosphorylation	1.55E-02
120	GO:0009825: multidimensional cell growth	1.55E-02
121	GO:0080188: RNA-directed DNA methylation	1.55E-02
122	GO:0009658: chloroplast organization	1.63E-02
123	GO:0006863: purine nucleobase transport	1.67E-02
124	GO:0009833: plant-type primary cell wall biogenesis	1.67E-02
125	GO:0009585: red, far-red light phototransduction	1.75E-02
126	GO:0009736: cytokinin-activated signaling pathway	1.75E-02
127	GO:2000377: regulation of reactive oxygen species metabolic process	1.80E-02
128	GO:0019344: cysteine biosynthetic process	1.80E-02
129	GO:0030150: protein import into mitochondrial matrix	1.80E-02
130	GO:0006338: chromatin remodeling	1.80E-02
131	GO:0051017: actin filament bundle assembly	1.80E-02
132	GO:0006289: nucleotide-excision repair	1.80E-02
133	GO:0010073: meristem maintenance	1.93E-02
134	GO:0006418: tRNA aminoacylation for protein translation	1.93E-02
135	GO:0016226: iron-sulfur cluster assembly	2.21E-02
136	GO:0035428: hexose transmembrane transport	2.21E-02
137	GO:0071215: cellular response to abscisic acid stimulus	2.35E-02
138	GO:0009686: gibberellin biosynthetic process	2.35E-02
139	GO:0010584: pollen exine formation	2.49E-02
140	GO:0016117: carotenoid biosynthetic process	2.64E-02
141	GO:0070417: cellular response to cold	2.64E-02
142	GO:0010087: phloem or xylem histogenesis	2.79E-02
143	GO:0010118: stomatal movement	2.79E-02
144	GO:0048868: pollen tube development	2.94E-02
145	GO:0046323: glucose import	2.94E-02
146	GO:0045489: pectin biosynthetic process	2.94E-02
147	GO:0010305: leaf vascular tissue pattern formation	2.94E-02
148	GO:0042752: regulation of circadian rhythm	3.10E-02
149	GO:0007059: chromosome segregation	3.10E-02
150	GO:0009646: response to absence of light	3.10E-02
151	GO:0048825: cotyledon development	3.25E-02
152	GO:0010583: response to cyclopentenone	3.58E-02
153	GO:0006633: fatty acid biosynthetic process	3.91E-02
154	GO:0009911: positive regulation of flower development	4.44E-02
155	GO:0009788: negative regulation of abscisic acid-activated signaling pathway	4.62E-02
156	GO:0010029: regulation of seed germination	4.62E-02
157	GO:0009627: systemic acquired resistance	4.80E-02
158	GO:0010411: xyloglucan metabolic process	4.98E-02

Rank	GO Term	Adjusted P value
1	GO:0004417: hydroxyethylthiazole kinase activity	0.00E+00
2	GO:0052834: inositol monophosphate phosphatase activity	0.00E+00
3	GO:0061634: alpha-D-xyloside xylohydrolase	0.00E+00
4	GO:0004331: fructose-2,6-bisphosphate 2-phosphatase activity	0.00E+00
5	GO:0004401: histidinol-phosphatase activity	0.00E+00
6	GO:0033818: beta-ketoacyl-acyl-carrier-protein synthase III activity	0.00E+00
7	GO:0003873: 6-phosphofructo-2-kinase activity	0.00E+00
8	GO:0008710: 8-amino-7-oxononanoate synthase activity	0.00E+00
9	GO:0080176: xyloglucan 1,6-alpha-xylosidase activity	0.00E+00
10	GO:0008805: carbon-monoxide oxygenase activity	5.21E-06
11	GO:0010347: L-galactose-1-phosphate phosphatase activity	3.40E-04
12	GO:0005227: calcium activated cation channel activity	3.40E-04
13	GO:0005290: L-histidine transmembrane transporter activity	3.40E-04
14	GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity	3.40E-04
15	GO:0004830: tryptophan-tRNA ligase activity	3.40E-04
16	GO:0004805: trehalose-phosphatase activity	7.37E-04
17	GO:0050017: L-3-cyanoalanine synthase activity	7.40E-04
18	GO:0004047: aminomethyltransferase activity	7.40E-04
19	GO:0052832: inositol monophosphate 3-phosphatase activity	7.40E-04
20	GO:0008934: inositol monophosphate 1-phosphatase activity	7.40E-04
21	GO:0052833: inositol monophosphate 4-phosphatase activity	7.40E-04
22	GO:0000064: L-ornithine transmembrane transporter activity	7.40E-04
23	GO:0050736: O-malonyltransferase activity	7.40E-04
24	GO:0004829: threonine-tRNA ligase activity	7.40E-04
25	GO:0009884: cytokinin receptor activity	7.40E-04
26	GO:0005034: osmosensor activity	1.20E-03
27	GO:0016707: gibberellin 3-beta-dioxygenase activity	1.20E-03
28	GO:0004315: 3-oxoacyl-[acyl-carrier-protein] synthase activity	1.20E-03
29	GO:0045548: phenylalanine ammonia-lyase activity	1.20E-03
30	GO:0042781: 3'-tRNA processing endoribonuclease activity	1.20E-03
31	GO:0004148: dihydrolipoyl dehydrogenase activity	1.20E-03
32	GO:0032549: ribonucleoside binding	1.20E-03
33	GO:0016805: dipeptidase activity	1.20E-03
34	GO:0031418: L-ascorbic acid binding	1.70E-03
35	GO:0009882: blue light photoreceptor activity	1.72E-03
36	GO:0080031: methyl salicylate esterase activity	1.72E-03
37	GO:0004300: enoyl-CoA hydratase activity	1.72E-03
38	GO:0015189: L-lysine transmembrane transporter activity	1.72E-03
39	GO:0015181: arginine transmembrane transporter activity	1.72E-03
40	GO:0017172: cysteine dioxygenase activity	1.72E-03
41	GO:0043621: protein self-association	2.25E-03
42	GO:0046556: alpha-L-arabinofuranosidase activity	2.31E-03
43	GO:0001053: plastid sigma factor activity	2.31E-03
44	GO:0016987: sigma factor activity	2.31E-03
45	GO:0010385: double-stranded methylated DNA binding	2.31E-03
46	GO:0070628: proteasome binding	2.31E-03
47	GO:0009044: xylan 1,4-beta-xylosidase activity	2.31E-03
48	GO:0042277: peptide binding	2.31E-03
49	GO:0004519: endonuclease activity	2.78E-03
50	GO:0005471: ATP:ADP antiporter activity	2.96E-03
51	GO:2001070: starch binding	3.65E-03
52	GO:0030983: mismatched DNA binding	3.65E-03
53	GO:0080030: methyl indole-3-acetate esterase activity	3.65E-03
54	GO:0031593: polyubiquitin binding	3.65E-03
55	GO:0019900: kinase binding	4.40E-03
56	GO:0004124: cysteine synthase activity	4.40E-03
57	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	4.40E-03
58	GO:0004656: procollagen-proline 4-dioxygenase activity	4.40E-03
59	GO:0005525: GTP binding	4.96E-03
60	GO:0003684: damaged DNA binding	5.05E-03
61	GO:0008235: metalloexopeptidase activity	5.19E-03
62	GO:0019899: enzyme binding	5.19E-03
63	GO:0008237: metallopeptidase activity	5.37E-03
64	GO:0003918: DNA topoisomerase type II (ATP-hydrolyzing) activity	6.92E-03
65	GO:0003747: translation release factor activity	7.85E-03
66	GO:0071949: FAD binding	7.85E-03
67	GO:0005096: GTPase activator activity	8.28E-03
68	GO:0003924: GTPase activity	9.40E-03
69	GO:0004673: protein histidine kinase activity	9.84E-03
70	GO:0001054: RNA polymerase I activity	1.09E-02
71	GO:0004177: aminopeptidase activity	1.09E-02
72	GO:0008327: methyl-CpG binding	1.09E-02
73	GO:0042802: identical protein binding	1.27E-02
74	GO:0000155: phosphorelay sensor kinase activity	1.31E-02
75	GO:0015266: protein channel activity	1.31E-02
76	GO:0102336: 3-oxo-arachidoyl-CoA synthase activity	1.67E-02
77	GO:0102337: 3-oxo-cerotoyl-CoA synthase activity	1.67E-02
78	GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity	1.67E-02
79	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	1.75E-02
80	GO:0004857: enzyme inhibitor activity	1.80E-02
81	GO:0043130: ubiquitin binding	1.80E-02
82	GO:0008134: transcription factor binding	1.80E-02
83	GO:0043424: protein histidine kinase binding	1.93E-02
84	GO:0005345: purine nucleobase transmembrane transporter activity	1.93E-02
85	GO:0004176: ATP-dependent peptidase activity	2.07E-02
86	GO:0016760: cellulose synthase (UDP-forming) activity	2.35E-02
87	GO:0030570: pectate lyase activity	2.35E-02
88	GO:0003824: catalytic activity	2.60E-02
89	GO:0004812: aminoacyl-tRNA ligase activity	2.64E-02
90	GO:0004402: histone acetyltransferase activity	2.79E-02
91	GO:0008536: Ran GTPase binding	2.94E-02
92	GO:0005355: glucose transmembrane transporter activity	3.10E-02
93	GO:0010181: FMN binding	3.10E-02
94	GO:0050662: coenzyme binding	3.10E-02
95	GO:0019843: rRNA binding	3.12E-02
96	GO:0019901: protein kinase binding	3.25E-02
97	GO:0030170: pyridoxal phosphate binding	3.46E-02
98	GO:0004518: nuclease activity	3.58E-02
99	GO:0051015: actin filament binding	3.75E-02
100	GO:0000156: phosphorelay response regulator activity	3.75E-02
101	GO:0016759: cellulose synthase activity	3.92E-02
102	GO:0016791: phosphatase activity	3.92E-02
103	GO:0003723: RNA binding	4.07E-02
104	GO:0008483: transaminase activity	4.09E-02
105	GO:0005200: structural constituent of cytoskeleton	4.09E-02
106	GO:0004672: protein kinase activity	4.20E-02
107	GO:0016413: O-acetyltransferase activity	4.26E-02
108	GO:0004806: triglyceride lipase activity	4.98E-02

Rank	GO Term	Adjusted P value
1	GO:0035452: extrinsic component of plastid membrane	0.00E+00
2	GO:0009537: proplastid	0.00E+00
3	GO:0009507: chloroplast	2.34E-06
4	GO:0010370: perinucleolar chromocenter	3.40E-04
5	GO:0009513: etioplast	7.40E-04
6	GO:0009707: chloroplast outer membrane	1.09E-03
7	GO:0016605: PML body	1.20E-03
8	GO:0009509: chromoplast	1.20E-03
9	GO:0032432: actin filament bundle	1.72E-03
10	GO:0009330: DNA topoisomerase complex (ATP-hydrolyzing)	2.31E-03
11	GO:0031305: integral component of mitochondrial inner membrane	6.03E-03
12	GO:0009501: amyloplast	6.03E-03
13	GO:0005720: nuclear heterochromatin	7.85E-03
14	GO:0005736: DNA-directed RNA polymerase I complex	7.85E-03
15	GO:0016604: nuclear body	8.82E-03
16	GO:0005884: actin filament	1.09E-02
17	GO:0016602: CCAAT-binding factor complex	1.31E-02
18	GO:0009574: preprophase band	1.31E-02
19	GO:0009532: plastid stroma	2.07E-02
20	GO:0031969: chloroplast membrane	2.14E-02
21	GO:0005744: mitochondrial inner membrane presequence translocase complex	2.49E-02
22	GO:0005770: late endosome	2.94E-02
23	GO:0009295: nucleoid	4.09E-02
24	GO:0030529: intracellular ribonucleoprotein complex	4.44E-02