gene detail

Gene description

TAIR ID: AT5G48460

Short description: Actin binding Calponin homology (CH) domain-containing protein

Pathogen responsiveness: 0.08

General responsiveness: -0.19

Orthologous

Rice: No orthologous gene

Maize: No orthologous gene

Wheat: No orthologous gene

GO biological process

actin filament network formation, actin crosslink formation, actin filament bundle assembly

GO cellular component

actin filament bundle, cytoplasm, actin filament

GO molecular function

actin filament binding

Protein domain

Pfam	PF00307, Calponin homology (CH) domain
SMART	SM00033, CH

Metabolic pathway

Not involved in metabolic pathway

KEGG pathway

Not involved in KEGG pathway

Transcriptional regulation

Regulator:
AT3G24050, AT4G18770, AT4G34680, AT2G45050, AT3G60530, AT2G43010

Target:
none

Protein-protein interaction network

No Interactor

Coexpression network

GSE45212_WT_PSTDC3000_AVRRPT2  view
GSE13739_WT_GO  view
GSE13739_EDS16_GO  view
GSE5686_WT_GO  view
GSE45212_MED14_PSTDC3000_AVRRPT2  view

Differentially expressed condition

20 conditions

Show entries

Search:

Series	Control	Treatment	Log₂FC	Adj. P value
GSE5520	Col, WT, control 24 h	Col, WT, PstDC3000 24 h	-1.59	4.59E-02
GSE45214	Col, med14, PstDC3000 AvrRpt2 0 h	Col, med14, PstDC3000 AvrRpt2 4 h	-1.61	2.65E-11
GSE45214	Col, WT, PstDC3000 AvrRpt2 0 h	Col, WT, PstDC3000 AvrRpt2 4 h	-1.64	1.46E-11
GSE9674	Ws-4, WT, control	Ws-4, WT, Xanthomonas strain Xcc147 90-105 min	-1.65	9.51E-03
GSE9674	Ws-4, AtMYB30 ox, control	Ws-4, AtMYB30 ox, Xanthomonas strain Xcc147 2-4 h	-1.95	7.25E-03
GSE5520	Col, WT, control 10 h	Col, WT, Cor- 10 h	-2.04	3.90E-03
GSE45214	Col, med16, PstDC3000 AvrRpt2 0 h	Col, med16, PstDC3000 AvrRpt2 4 h	-2.11	1.37E-13
GSE9674	Ws-4, WT, control	Ws-4, WT, Xanthomonas strain Xcc147 2-4 h	-2.12	5.72E-03
GSE40544	Col, Sid2, control	Col, Sid2, PstDC3000 AvrRpt2	-2.21	4.55E-02
GSE18978	Col, WT, control 24 h	Col, WT, PsmES4326 24 h	-2.33	3.25E-10

Showing 1 to 10 of 20 entries

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