gene detail

Gene description

TAIR ID: AT5G46330

Short description: Leucine-rich receptor-like protein kinase family protein

Pathogen responsiveness: -0.10

General responsiveness: 0.45

Orthologous

Rice: No orthologous gene

Maize:

GRMZM2G080041

Wheat: No orthologous gene

GO biological process

defense response to bacterium, defense response by callose deposition in cell wall, protein phosphorylation, detection of bacterium, regulation of anion channel activity, transmembrane receptor protein tyrosine kinase signaling pathway, receptor-mediated endocytosis, oxidation-reduction process

GO cellular component

endosome membrane, membrane, plasma membrane, endosome, integral component of membrane

GO molecular function

protein binding, transmembrane receptor protein serine/threonine kinase activity, kinase activity, protein serine/threonine kinase activity

Protein domain

Pfam	PF00069, Protein kinase domain
Pfam	PF13855, Leucine rich repeat
Pfam	PF00560, Leucine Rich Repeat
Pfam	PF08263, Leucine rich repeat N-terminal domain
SMART	SM00369, LRR_TYP
SMART	SM00365, LRR_SD22
SMART	SM00220, S_TKc

Metabolic pathway

Not involved in metabolic pathway

KEGG pathway

PATH:ath04016: MAPK signaling pathway - plant
PATH:ath04626: Plant-pathogen interaction

Transcriptional regulation

Regulator:
AT1G51600, AT5G13790, AT1G24260

Target:
none

Protein-protein interaction network

The number of partners (degree) is: 29 (Top5%)

click to view PPI network

Coexpression network

GSE26679_WT_GC  view
GSE56094_WT_HRPA-  view
GSE13739_EDS16_GO  view
GSE5686_WT_GO  view
GSE56094_WT_PSTDC3000  view
GSE26679_EDR1_GC  view

Differentially expressed condition

16 conditions

Series	Control	Treatment	Log₂FC	Adj. P value
GSE17464	Laer, control	Laer, Flg22 1 h	1.69	1.05E-03
GSE17464	Penta, control	Penta, Alternaria brassicicola 3 d	-2.63	6.64E-07
GSE26679	Col, WT, GC 0 h	Col, WT, GC 18 h	2.96	1.82E-09
GSE26679	Col, WT, GC 0 h	Col, WT, GC 36 h	3.19	3.82E-10
GSE26679	Col, edr1, GC 0 h	Col, edr1, GC 18 h	3.18	4.37E-10
GSE26679	Col, edr1, GC 0 h	Col, edr1, GC 36 h	3.99	3.86E-12
GSE37269	Di2, WT, control	Di2, WT, TEV 21 d	-2.07	1.18E-02
GSE37269	Ei2, WT, control	Ei2, WT, TEV 21 d	-2.25	1.56E-03
GSE37269	St0, WT, control	St0, WT, TEV 21 d	-1.64	1.27E-02
GSE45214	Col, WT, PstDC3000 AvrRpt2 0 h	Col, WT, PstDC3000 AvrRpt2 4 h	1.59	9.78E-10
GSE45214	Col, med14, PstDC3000 AvrRpt2 0 h	Col, med14, PstDC3000 AvrRpt2 4 h	1.55	1.53E-09
GSE45214	Col, npr1, PstDC3000 AvrRpt2 0 h	Col, npr1, PstDC3000 AvrRpt2 4 h	1.64	9.02E-10
GSE52979	Col, WT, acetone	Col, WT, acetone flg22_2 h	1.55	1.05E-05
GSE52979	Col, WT, oxo_C14_HSL	Col, WT, oxo_C14_HSL flg22_2 h	1.65	4.48E-06
GSE5520	Col, WT, control 10 h	Col, WT, Cor- 10 h	-2.04	1.87E-02
GSE5520	Col, WT, control 7 h	Col, WT, PstDC3000 7 h	-1.73	1.58E-02