gene detail

Gene description

TAIR ID: AT5G15550

Short description: Transducin/WD40 repeat-like superfamily protein

Pathogen responsiveness: -1.69

General responsiveness: -0.23

Orthologous

Rice: No orthologous gene

Maize:

GRMZM2G050501

Wheat:

TA.30101.1.S1_AT

GO biological process

maturation of LSU-rRNA, maturation of 5.8S rRNA

GO cellular component

nucleolus, heterotrimeric G-protein complex, PeBoW complex, nucleoplasm, nucleus, plasmodesma, Cul4-RING E3 ubiquitin ligase complex, preribosome, large subunit precursor

GO molecular function

protein binding

Protein domain

Pfam	PF00400, WD domain, G-beta repeat
Pfam	PF08154, NLE (NUC135) domain
SMART	SM00320, WD40

Metabolic pathway

Not involved in metabolic pathway

KEGG pathway

Not involved in KEGG pathway

Transcriptional regulation

Regulator:
AT2G38250, AT3G14230

Target:
none

Protein-protein interaction network

The number of partners (degree) is: 1

click to view PPI network

Coexpression network

GSE45212_WT_PSTDC3000_AVRRPT2  view
GSE56094_WT_HRPA-  view
GSE13739_WT_GO  view
GSE13739_EDS16_GO  view
GSE5686_WT_GO  view
GSE56094_WT_PSTDC3000  view
GSE45212_MED14_PSTDC3000_AVRRPT2  view
GSE26679_EDR1_GC  view

Differentially expressed condition

1 conditions

Series	Control	Treatment	Log₂FC	Adj. P value
GSE58954	Col, WT, Psm AvrRpt2 0 h	Col, WT, Psm AvrRpt2 6 h	1.73	7.79E-03