GO Enrichment Analysis of Co-expressed Genes with
AT5G15550
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0000495: box H/ACA snoRNA 3'-end processing | 0.00E+00 |
| 2 | GO:0072321: chaperone-mediated protein transport | 0.00E+00 |
| 3 | GO:0008612: peptidyl-lysine modification to peptidyl-hypusine | 0.00E+00 |
| 4 | GO:0071731: response to nitric oxide | 0.00E+00 |
| 5 | GO:0090069: regulation of ribosome biogenesis | 0.00E+00 |
| 6 | GO:1990481: mRNA pseudouridine synthesis | 0.00E+00 |
| 7 | GO:0006364: rRNA processing | 2.54E-18 |
| 8 | GO:0009553: embryo sac development | 2.01E-07 |
| 9 | GO:0000463: maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 8.68E-07 |
| 10 | GO:0010162: seed dormancy process | 3.90E-06 |
| 11 | GO:0042273: ribosomal large subunit biogenesis | 1.44E-05 |
| 12 | GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 4.98E-05 |
| 13 | GO:0042254: ribosome biogenesis | 6.12E-05 |
| 14 | GO:0006412: translation | 1.26E-04 |
| 15 | GO:0031120: snRNA pseudouridine synthesis | 1.31E-04 |
| 16 | GO:0000469: cleavage involved in rRNA processing | 1.31E-04 |
| 17 | GO:0031118: rRNA pseudouridine synthesis | 1.31E-04 |
| 18 | GO:0043609: regulation of carbon utilization | 1.31E-04 |
| 19 | GO:0017183: peptidyl-diphthamide biosynthetic process from peptidyl-histidine | 1.31E-04 |
| 20 | GO:0030490: maturation of SSU-rRNA | 1.31E-04 |
| 21 | GO:0000494: box C/D snoRNA 3'-end processing | 1.31E-04 |
| 22 | GO:2000232: regulation of rRNA processing | 1.31E-04 |
| 23 | GO:0043985: histone H4-R3 methylation | 1.31E-04 |
| 24 | GO:1990258: histone glutamine methylation | 1.31E-04 |
| 25 | GO:2000024: regulation of leaf development | 1.34E-04 |
| 26 | GO:0008535: respiratory chain complex IV assembly | 3.03E-04 |
| 27 | GO:0080009: mRNA methylation | 3.03E-04 |
| 28 | GO:0031538: negative regulation of anthocyanin metabolic process | 3.03E-04 |
| 29 | GO:0034470: ncRNA processing | 3.03E-04 |
| 30 | GO:0009944: polarity specification of adaxial/abaxial axis | 4.64E-04 |
| 31 | GO:0045039: protein import into mitochondrial inner membrane | 4.99E-04 |
| 32 | GO:0045604: regulation of epidermal cell differentiation | 4.99E-04 |
| 33 | GO:0006556: S-adenosylmethionine biosynthetic process | 4.99E-04 |
| 34 | GO:0009294: DNA mediated transformation | 6.66E-04 |
| 35 | GO:0043967: histone H4 acetylation | 7.14E-04 |
| 36 | GO:0007276: gamete generation | 7.14E-04 |
| 37 | GO:0071329: cellular response to sucrose stimulus | 7.14E-04 |
| 38 | GO:0009855: determination of bilateral symmetry | 7.14E-04 |
| 39 | GO:0009561: megagametogenesis | 7.24E-04 |
| 40 | GO:0016569: covalent chromatin modification | 7.87E-04 |
| 41 | GO:0010501: RNA secondary structure unwinding | 8.42E-04 |
| 42 | GO:1900864: mitochondrial RNA modification | 9.47E-04 |
| 43 | GO:0046345: abscisic acid catabolic process | 9.47E-04 |
| 44 | GO:0042274: ribosomal small subunit biogenesis | 9.47E-04 |
| 45 | GO:0000380: alternative mRNA splicing, via spliceosome | 1.20E-03 |
| 46 | GO:0010375: stomatal complex patterning | 1.20E-03 |
| 47 | GO:0031167: rRNA methylation | 1.20E-03 |
| 48 | GO:0016554: cytidine to uridine editing | 1.47E-03 |
| 49 | GO:0009451: RNA modification | 1.72E-03 |
| 50 | GO:0048444: floral organ morphogenesis | 1.76E-03 |
| 51 | GO:0010077: maintenance of inflorescence meristem identity | 1.76E-03 |
| 52 | GO:0043966: histone H3 acetylation | 1.76E-03 |
| 53 | GO:0010374: stomatal complex development | 2.06E-03 |
| 54 | GO:0045995: regulation of embryonic development | 2.06E-03 |
| 55 | GO:0006368: transcription elongation from RNA polymerase II promoter | 2.06E-03 |
| 56 | GO:0080186: developmental vegetative growth | 2.06E-03 |
| 57 | GO:0000028: ribosomal small subunit assembly | 2.39E-03 |
| 58 | GO:0010928: regulation of auxin mediated signaling pathway | 2.39E-03 |
| 59 | GO:0035265: organ growth | 2.39E-03 |
| 60 | GO:0001510: RNA methylation | 2.73E-03 |
| 61 | GO:0000387: spliceosomal snRNP assembly | 3.46E-03 |
| 62 | GO:1900865: chloroplast RNA modification | 3.46E-03 |
| 63 | GO:0030422: production of siRNA involved in RNA interference | 3.84E-03 |
| 64 | GO:0006913: nucleocytoplasmic transport | 4.24E-03 |
| 65 | GO:0010582: floral meristem determinacy | 4.65E-03 |
| 66 | GO:0045892: negative regulation of transcription, DNA-templated | 4.88E-03 |
| 67 | GO:0006626: protein targeting to mitochondrion | 5.08E-03 |
| 68 | GO:0010030: positive regulation of seed germination | 5.97E-03 |
| 69 | GO:0030150: protein import into mitochondrial matrix | 6.91E-03 |
| 70 | GO:0051302: regulation of cell division | 7.40E-03 |
| 71 | GO:0007005: mitochondrion organization | 8.42E-03 |
| 72 | GO:0006730: one-carbon metabolic process | 8.42E-03 |
| 73 | GO:0009693: ethylene biosynthetic process | 8.95E-03 |
| 74 | GO:0070417: cellular response to cold | 1.00E-02 |
| 75 | GO:0008284: positive regulation of cell proliferation | 1.00E-02 |
| 76 | GO:0008033: tRNA processing | 1.06E-02 |
| 77 | GO:0000413: protein peptidyl-prolyl isomerization | 1.06E-02 |
| 78 | GO:0010197: polar nucleus fusion | 1.12E-02 |
| 79 | GO:0009960: endosperm development | 1.12E-02 |
| 80 | GO:0048825: cotyledon development | 1.24E-02 |
| 81 | GO:0080156: mitochondrial mRNA modification | 1.30E-02 |
| 82 | GO:0071281: cellular response to iron ion | 1.42E-02 |
| 83 | GO:0046686: response to cadmium ion | 1.61E-02 |
| 84 | GO:0016049: cell growth | 1.96E-02 |
| 85 | GO:0006414: translational elongation | 2.14E-02 |
| 86 | GO:0048527: lateral root development | 2.25E-02 |
| 87 | GO:0008283: cell proliferation | 2.88E-02 |
| 88 | GO:0009793: embryo development ending in seed dormancy | 2.90E-02 |
| 89 | GO:0032259: methylation | 2.99E-02 |
| 90 | GO:0000154: rRNA modification | 3.13E-02 |
| 91 | GO:0006417: regulation of translation | 3.83E-02 |
| 92 | GO:0006396: RNA processing | 4.67E-02 |
| 93 | GO:0009651: response to salt stress | 4.95E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0016018: cyclosporin A binding | 0.00E+00 |
| 2 | GO:0003963: RNA-3'-phosphate cyclase activity | 0.00E+00 |
| 3 | GO:0004164: diphthine synthase activity | 0.00E+00 |
| 4 | GO:0034038: deoxyhypusine synthase activity | 0.00E+00 |
| 5 | GO:0003723: RNA binding | 2.16E-16 |
| 6 | GO:0000166: nucleotide binding | 2.55E-10 |
| 7 | GO:0030515: snoRNA binding | 3.15E-09 |
| 8 | GO:0004407: histone deacetylase activity | 2.96E-07 |
| 9 | GO:0003735: structural constituent of ribosome | 2.98E-06 |
| 10 | GO:0008026: ATP-dependent helicase activity | 6.51E-06 |
| 11 | GO:0003746: translation elongation factor activity | 1.58E-05 |
| 12 | GO:0003899: DNA-directed 5'-3' RNA polymerase activity | 4.75E-05 |
| 13 | GO:1990259: histone-glutamine methyltransferase activity | 1.31E-04 |
| 14 | GO:0042134: rRNA primary transcript binding | 1.31E-04 |
| 15 | GO:0016422: mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity | 1.31E-04 |
| 16 | GO:0001055: RNA polymerase II activity | 1.62E-04 |
| 17 | GO:0001054: RNA polymerase I activity | 2.24E-04 |
| 18 | GO:0001056: RNA polymerase III activity | 2.58E-04 |
| 19 | GO:0043021: ribonucleoprotein complex binding | 3.03E-04 |
| 20 | GO:0008649: rRNA methyltransferase activity | 4.99E-04 |
| 21 | GO:0004478: methionine adenosyltransferase activity | 4.99E-04 |
| 22 | GO:0070181: small ribosomal subunit rRNA binding | 4.99E-04 |
| 23 | GO:0000993: RNA polymerase II core binding | 9.47E-04 |
| 24 | GO:0004004: ATP-dependent RNA helicase activity | 1.85E-03 |
| 25 | GO:0050897: cobalt ion binding | 2.37E-03 |
| 26 | GO:0004521: endoribonuclease activity | 4.65E-03 |
| 27 | GO:0000049: tRNA binding | 4.65E-03 |
| 28 | GO:0009982: pseudouridine synthase activity | 5.08E-03 |
| 29 | GO:0019843: rRNA binding | 7.95E-03 |
| 30 | GO:0004402: histone acetyltransferase activity | 1.06E-02 |
| 31 | GO:0004527: exonuclease activity | 1.12E-02 |
| 32 | GO:0003713: transcription coactivator activity | 1.12E-02 |
| 33 | GO:0003729: mRNA binding | 1.51E-02 |
| 34 | GO:0008168: methyltransferase activity | 1.64E-02 |
| 35 | GO:0004721: phosphoprotein phosphatase activity | 1.89E-02 |
| 36 | GO:0008757: S-adenosylmethionine-dependent methyltransferase activity | 1.96E-02 |
| 37 | GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity | 2.03E-02 |
| 38 | GO:0003676: nucleic acid binding | 2.39E-02 |
| 39 | GO:0005515: protein binding | 2.41E-02 |
| 40 | GO:0005525: GTP binding | 2.43E-02 |
| 41 | GO:0000987: core promoter proximal region sequence-specific DNA binding | 2.48E-02 |
| 42 | GO:0016787: hydrolase activity | 2.59E-02 |
| 43 | GO:0003924: GTPase activity | 3.12E-02 |
| 44 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 3.22E-02 |
| 45 | GO:0004519: endonuclease activity | 3.40E-02 |
| 46 | GO:0051082: unfolded protein binding | 4.58E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0034457: Mpp10 complex | 0.00E+00 |
| 2 | GO:0034455: t-UTP complex | 0.00E+00 |
| 3 | GO:0036396: MIS complex | 0.00E+00 |
| 4 | GO:0042719: mitochondrial intermembrane space protein transporter complex | 0.00E+00 |
| 5 | GO:0005730: nucleolus | 6.80E-36 |
| 6 | GO:0032040: small-subunit processome | 1.44E-14 |
| 7 | GO:0005634: nucleus | 1.65E-08 |
| 8 | GO:0080008: Cul4-RING E3 ubiquitin ligase complex | 3.33E-07 |
| 9 | GO:0070545: PeBoW complex | 8.68E-07 |
| 10 | GO:0005840: ribosome | 1.65E-05 |
| 11 | GO:0031428: box C/D snoRNP complex | 3.53E-05 |
| 12 | GO:0030687: preribosome, large subunit precursor | 6.70E-05 |
| 13 | GO:0034388: Pwp2p-containing subcomplex of 90S preribosome | 1.31E-04 |
| 14 | GO:0030688: preribosome, small subunit precursor | 1.31E-04 |
| 15 | GO:0008023: transcription elongation factor complex | 1.31E-04 |
| 16 | GO:0005736: DNA-directed RNA polymerase I complex | 1.34E-04 |
| 17 | GO:0005666: DNA-directed RNA polymerase III complex | 1.62E-04 |
| 18 | GO:0015030: Cajal body | 1.62E-04 |
| 19 | GO:0000418: DNA-directed RNA polymerase IV complex | 1.92E-04 |
| 20 | GO:0005665: DNA-directed RNA polymerase II, core complex | 2.58E-04 |
| 21 | GO:0000419: DNA-directed RNA polymerase V complex | 4.19E-04 |
| 22 | GO:0033588: Elongator holoenzyme complex | 7.14E-04 |
| 23 | GO:0031429: box H/ACA snoRNP complex | 7.14E-04 |
| 24 | GO:0022625: cytosolic large ribosomal subunit | 7.16E-04 |
| 25 | GO:0005834: heterotrimeric G-protein complex | 7.29E-04 |
| 26 | GO:0005743: mitochondrial inner membrane | 1.07E-03 |
| 27 | GO:0000178: exosome (RNase complex) | 1.20E-03 |
| 28 | GO:0005759: mitochondrial matrix | 1.48E-03 |
| 29 | GO:0016363: nuclear matrix | 1.76E-03 |
| 30 | GO:0000123: histone acetyltransferase complex | 2.06E-03 |
| 31 | GO:0022627: cytosolic small ribosomal subunit | 2.38E-03 |
| 32 | GO:0034399: nuclear periphery | 2.39E-03 |
| 33 | GO:0005618: cell wall | 2.40E-03 |
| 34 | GO:0005763: mitochondrial small ribosomal subunit | 3.08E-03 |
| 35 | GO:0005852: eukaryotic translation initiation factor 3 complex | 4.24E-03 |
| 36 | GO:0031307: integral component of mitochondrial outer membrane | 4.65E-03 |
| 37 | GO:0019013: viral nucleocapsid | 5.08E-03 |
| 38 | GO:0005747: mitochondrial respiratory chain complex I | 5.45E-03 |
| 39 | GO:0005758: mitochondrial intermembrane space | 6.91E-03 |
| 40 | GO:0005654: nucleoplasm | 7.74E-03 |
| 41 | GO:0015935: small ribosomal subunit | 7.91E-03 |
| 42 | GO:0005744: mitochondrial inner membrane presequence translocase complex | 9.49E-03 |
| 43 | GO:0022626: cytosolic ribosome | 1.22E-02 |
| 44 | GO:0016592: mediator complex | 1.36E-02 |
| 45 | GO:0030529: intracellular ribonucleoprotein complex | 1.68E-02 |
| 46 | GO:0005739: mitochondrion | 1.94E-02 |
| 47 | GO:0015934: large ribosomal subunit | 2.25E-02 |
| 48 | GO:0005622: intracellular | 2.67E-02 |
| 49 | GO:0005773: vacuole | 3.66E-02 |
| 50 | GO:0016607: nuclear speck | 4.11E-02 |
| 51 | GO:0005732: small nucleolar ribonucleoprotein complex | 4.87E-02 |