gene detail

Gene description

TAIR ID: AT4G34620

Short description: small subunit ribosomal protein 16

Pathogen responsiveness: -1.21

General responsiveness: 1.07

Orthologous

Rice: No orthologous gene

Maize: No orthologous gene

Wheat: No orthologous gene

GO biological process

translation, embryo development ending in seed dormancy, mitochondrial translation, ribosome biogenesis

GO cellular component

chloroplast envelope, chloroplast, ribosome, plastid, small ribosomal subunit, mitochondrion

GO molecular function

structural constituent of ribosome

Protein domain

Pfam	PF00886, Ribosomal protein S16

Metabolic pathway

Not involved in metabolic pathway

KEGG pathway

PATH:ath03010: Ribosome

Transcriptional regulation

Regulator:
AT1G24260

Target:
none

Protein-protein interaction network

The number of partners (degree) is: 3

Coexpression network

Differentially expressed condition

5 conditions

Series	Control	Treatment	Log₂FC	Adj. P value
GSE18978	Col, WT, control 24 h	Col, WT, PsmES4326 24 h	-2.90	8.95E-10
GSE56094	Col, WT, control 10 h	Col, WT, PstDC3000 10 h	-1.76	1.44E-07
GSE56094	Col, WT, control 11 h	Col, WT, PstDC3000 11 h	-1.51	6.97E-06
GSE56094	Col, WT, control 12 h	Col, WT, PstDC3000 12 h	-1.52	5.59E-06
GSE56094	Col, WT, control 13 h	Col, WT, PstDC3000 13 h	-1.52	4.36E-06