Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT4G34620

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:1901918: negative regulation of exoribonuclease activity0.00E+00
2GO:2000121: regulation of removal of superoxide radicals0.00E+00
3GO:0061635: regulation of protein complex stability0.00E+00
4GO:0006223: uracil salvage0.00E+00
5GO:0005996: monosaccharide metabolic process0.00E+00
6GO:0016553: base conversion or substitution editing0.00E+00
7GO:0006399: tRNA metabolic process0.00E+00
8GO:0015979: photosynthesis4.08E-26
9GO:0006412: translation7.87E-20
10GO:0015995: chlorophyll biosynthetic process9.28E-17
11GO:0032544: plastid translation3.37E-16
12GO:0009735: response to cytokinin1.96E-13
13GO:0042254: ribosome biogenesis7.04E-12
14GO:0009773: photosynthetic electron transport in photosystem I2.57E-08
15GO:0090391: granum assembly6.00E-08
16GO:0010196: nonphotochemical quenching1.09E-07
17GO:0010027: thylakoid membrane organization3.05E-07
18GO:0009658: chloroplast organization3.93E-07
19GO:0042742: defense response to bacterium5.37E-07
20GO:0015976: carbon utilization8.37E-07
21GO:0009409: response to cold2.79E-06
22GO:0018119: peptidyl-cysteine S-nitrosylation6.33E-05
23GO:2000122: negative regulation of stomatal complex development9.01E-05
24GO:0010037: response to carbon dioxide9.01E-05
25GO:0010207: photosystem II assembly1.15E-04
26GO:0019253: reductive pentose-phosphate cycle1.15E-04
27GO:1901259: chloroplast rRNA processing2.71E-04
28GO:0010019: chloroplast-nucleus signaling pathway2.71E-04
29GO:0034337: RNA folding3.86E-04
30GO:0071588: hydrogen peroxide mediated signaling pathway3.86E-04
31GO:0010729: positive regulation of hydrogen peroxide biosynthetic process3.86E-04
32GO:0043489: RNA stabilization3.86E-04
33GO:1904966: positive regulation of vitamin E biosynthetic process3.86E-04
34GO:1904964: positive regulation of phytol biosynthetic process3.86E-04
35GO:0042371: vitamin K biosynthetic process3.86E-04
36GO:0048564: photosystem I assembly4.40E-04
37GO:0042255: ribosome assembly4.40E-04
38GO:0009657: plastid organization5.37E-04
39GO:0010206: photosystem II repair6.44E-04
40GO:0006783: heme biosynthetic process6.44E-04
41GO:0032502: developmental process6.81E-04
42GO:0006729: tetrahydrobiopterin biosynthetic process8.38E-04
43GO:0006521: regulation of cellular amino acid metabolic process8.38E-04
44GO:0030388: fructose 1,6-bisphosphate metabolic process8.38E-04
45GO:1902326: positive regulation of chlorophyll biosynthetic process8.38E-04
46GO:0080183: response to photooxidative stress8.38E-04
47GO:0006782: protoporphyrinogen IX biosynthetic process8.85E-04
48GO:0019684: photosynthesis, light reaction1.02E-03
49GO:0043085: positive regulation of catalytic activity1.02E-03
50GO:0006006: glucose metabolic process1.32E-03
51GO:0006000: fructose metabolic process1.36E-03
52GO:0006518: peptide metabolic process1.36E-03
53GO:0045493: xylan catabolic process1.36E-03
54GO:0018298: protein-chromophore linkage1.39E-03
55GO:0055114: oxidation-reduction process1.80E-03
56GO:0006636: unsaturated fatty acid biosynthetic process1.85E-03
57GO:1902476: chloride transmembrane transport1.96E-03
58GO:0051513: regulation of monopolar cell growth1.96E-03
59GO:0071484: cellular response to light intensity1.96E-03
60GO:0006241: CTP biosynthetic process1.96E-03
61GO:0080170: hydrogen peroxide transmembrane transport1.96E-03
62GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity1.96E-03
63GO:0006165: nucleoside diphosphate phosphorylation1.96E-03
64GO:0006228: UTP biosynthetic process1.96E-03
65GO:0055070: copper ion homeostasis1.96E-03
66GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis1.96E-03
67GO:2001141: regulation of RNA biosynthetic process1.96E-03
68GO:0034599: cellular response to oxidative stress1.99E-03
69GO:0009768: photosynthesis, light harvesting in photosystem I2.27E-03
70GO:0045454: cell redox homeostasis2.33E-03
71GO:0010114: response to red light2.60E-03
72GO:0019464: glycine decarboxylation via glycine cleavage system2.63E-03
73GO:0006183: GTP biosynthetic process2.63E-03
74GO:0045727: positive regulation of translation2.63E-03
75GO:0015994: chlorophyll metabolic process2.63E-03
76GO:0030104: water homeostasis2.63E-03
77GO:0006546: glycine catabolic process2.63E-03
78GO:0044206: UMP salvage2.63E-03
79GO:0009411: response to UV2.98E-03
80GO:0009247: glycolipid biosynthetic process3.37E-03
81GO:0034052: positive regulation of plant-type hypersensitive response3.37E-03
82GO:0043097: pyrimidine nucleoside salvage3.37E-03
83GO:0031365: N-terminal protein amino acid modification3.37E-03
84GO:0000413: protein peptidyl-prolyl isomerization3.79E-03
85GO:0042549: photosystem II stabilization4.17E-03
86GO:0006655: phosphatidylglycerol biosynthetic process4.17E-03
87GO:0010190: cytochrome b6f complex assembly4.17E-03
88GO:0006206: pyrimidine nucleobase metabolic process4.17E-03
89GO:0032973: amino acid export4.17E-03
90GO:0009955: adaxial/abaxial pattern specification5.02E-03
91GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)5.02E-03
92GO:0017148: negative regulation of translation5.02E-03
93GO:0010189: vitamin E biosynthetic process5.02E-03
94GO:0009854: oxidative photosynthetic carbon pathway5.02E-03
95GO:0010555: response to mannitol5.02E-03
96GO:0000302: response to reactive oxygen species5.05E-03
97GO:0009772: photosynthetic electron transport in photosystem II5.94E-03
98GO:0043090: amino acid import5.94E-03
99GO:0006821: chloride transport5.94E-03
100GO:0050829: defense response to Gram-negative bacterium5.94E-03
101GO:0009642: response to light intensity6.90E-03
102GO:0006353: DNA-templated transcription, termination6.90E-03
103GO:0043068: positive regulation of programmed cell death6.90E-03
104GO:0006605: protein targeting6.90E-03
105GO:0019375: galactolipid biosynthetic process6.90E-03
106GO:0080167: response to karrikin6.98E-03
107GO:0006002: fructose 6-phosphate metabolic process7.92E-03
108GO:0071482: cellular response to light stimulus7.92E-03
109GO:0009627: systemic acquired resistance8.17E-03
110GO:0009051: pentose-phosphate shunt, oxidative branch8.99E-03
111GO:0009245: lipid A biosynthetic process8.99E-03
112GO:0080144: amino acid homeostasis8.99E-03
113GO:0009817: defense response to fungus, incompatible interaction9.56E-03
114GO:0010205: photoinhibition1.01E-02
115GO:0010119: regulation of stomatal movement1.11E-02
116GO:0009631: cold acclimation1.11E-02
117GO:0006949: syncytium formation1.13E-02
118GO:0009637: response to blue light1.21E-02
119GO:0009698: phenylpropanoid metabolic process1.25E-02
120GO:0009089: lysine biosynthetic process via diaminopimelate1.25E-02
121GO:0006352: DNA-templated transcription, initiation1.25E-02
122GO:0000272: polysaccharide catabolic process1.25E-02
123GO:0009750: response to fructose1.25E-02
124GO:0015706: nitrate transport1.38E-02
125GO:0016024: CDP-diacylglycerol biosynthetic process1.38E-02
126GO:0006094: gluconeogenesis1.51E-02
127GO:0009767: photosynthetic electron transport chain1.51E-02
128GO:0005986: sucrose biosynthetic process1.51E-02
129GO:0010628: positive regulation of gene expression1.51E-02
130GO:0009744: response to sucrose1.57E-02
131GO:0010167: response to nitrate1.78E-02
132GO:0046688: response to copper ion1.78E-02
133GO:0019344: cysteine biosynthetic process2.07E-02
134GO:0009116: nucleoside metabolic process2.07E-02
135GO:0000027: ribosomal large subunit assembly2.07E-02
136GO:0006364: rRNA processing2.12E-02
137GO:0006810: transport2.26E-02
138GO:0048511: rhythmic process2.37E-02
139GO:0061077: chaperone-mediated protein folding2.37E-02
140GO:0031408: oxylipin biosynthetic process2.37E-02
141GO:0006096: glycolytic process2.51E-02
142GO:0009814: defense response, incompatible interaction2.53E-02
143GO:0006012: galactose metabolic process2.69E-02
144GO:0009831: plant-type cell wall modification involved in multidimensional cell growth2.69E-02
145GO:0006284: base-excision repair2.86E-02
146GO:0009306: protein secretion2.86E-02
147GO:0042545: cell wall modification2.93E-02
148GO:0009416: response to light stimulus2.96E-02
149GO:0016117: carotenoid biosynthetic process3.03E-02
150GO:0006396: RNA processing3.11E-02
151GO:0042631: cellular response to water deprivation3.20E-02
152GO:0042335: cuticle development3.20E-02
153GO:0034220: ion transmembrane transport3.20E-02
154GO:0009741: response to brassinosteroid3.38E-02
155GO:0006662: glycerol ether metabolic process3.38E-02
156GO:0042752: regulation of circadian rhythm3.55E-02
157GO:0015986: ATP synthesis coupled proton transport3.55E-02
158GO:0009749: response to glucose3.74E-02
159GO:0019252: starch biosynthetic process3.74E-02
160GO:0002229: defense response to oomycetes3.92E-02
161GO:0042744: hydrogen peroxide catabolic process4.29E-02
162GO:0009790: embryo development4.40E-02
163GO:0009828: plant-type cell wall loosening4.49E-02
164GO:0010286: heat acclimation4.69E-02
165GO:0006633: fatty acid biosynthetic process4.73E-02
RankGO TermAdjusted P value
1GO:0051738: xanthophyll binding0.00E+00
2GO:0009974: zeinoxanthin epsilon hydroxylase activity0.00E+00
3GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity0.00E+00
4GO:0046406: magnesium protoporphyrin IX methyltransferase activity0.00E+00
5GO:0016754: sinapoylglucose-malate O-sinapoyltransferase activity0.00E+00
6GO:0061634: alpha-D-xyloside xylohydrolase0.00E+00
7GO:0008887: glycerate kinase activity0.00E+00
8GO:0045550: geranylgeranyl reductase activity0.00E+00
9GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity0.00E+00
10GO:0009979: 16:0 monogalactosyldiacylglycerol desaturase activity0.00E+00
11GO:0004853: uroporphyrinogen decarboxylase activity0.00E+00
12GO:0050278: sedoheptulose-bisphosphatase activity0.00E+00
13GO:0080176: xyloglucan 1,6-alpha-xylosidase activity0.00E+00
14GO:0015038: glutathione disulfide oxidoreductase activity0.00E+00
15GO:0046408: chlorophyll synthetase activity0.00E+00
16GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity0.00E+00
17GO:0019843: rRNA binding4.97E-34
18GO:0003735: structural constituent of ribosome5.10E-25
19GO:0051920: peroxiredoxin activity6.21E-06
20GO:0016168: chlorophyll binding8.60E-06
21GO:0016209: antioxidant activity1.48E-05
22GO:0016851: magnesium chelatase activity5.10E-05
23GO:0003755: peptidyl-prolyl cis-trans isomerase activity6.69E-05
24GO:0004089: carbonate dehydratase activity9.60E-05
25GO:0008266: poly(U) RNA binding1.15E-04
26GO:0003959: NADPH dehydrogenase activity1.40E-04
27GO:0004130: cytochrome-c peroxidase activity2.01E-04
28GO:0019899: enzyme binding3.51E-04
29GO:0003727: single-stranded RNA binding3.51E-04
30GO:0046906: tetrapyrrole binding3.86E-04
31GO:0047066: phospholipid-hydroperoxide glutathione peroxidase activity3.86E-04
32GO:0046028: electron transporter, transferring electrons from cytochrome b6/f complex of photosystem II activity3.86E-04
33GO:0009671: nitrate:proton symporter activity3.86E-04
34GO:0008124: 4-alpha-hydroxytetrahydrobiopterin dehydratase activity3.86E-04
35GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water5.37E-04
36GO:0004618: phosphoglycerate kinase activity8.38E-04
37GO:0010297: heteropolysaccharide binding8.38E-04
38GO:0046509: 1,2-diacylglycerol 3-beta-galactosyltransferase activity8.38E-04
39GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity8.38E-04
40GO:0047158: sinapoylglucose-sinapoylglucose O-sinapoyltransferase activity8.38E-04
41GO:0016630: protochlorophyllide reductase activity8.38E-04
42GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase8.38E-04
43GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity8.38E-04
44GO:0008967: phosphoglycolate phosphatase activity8.38E-04
45GO:0047746: chlorophyllase activity8.38E-04
46GO:0042389: omega-3 fatty acid desaturase activity8.38E-04
47GO:0005509: calcium ion binding9.86E-04
48GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor1.36E-03
49GO:0004324: ferredoxin-NADP+ reductase activity1.36E-03
50GO:0010277: chlorophyllide a oxygenase [overall] activity1.36E-03
51GO:0031409: pigment binding1.85E-03
52GO:0008097: 5S rRNA binding1.96E-03
53GO:0004375: glycine dehydrogenase (decarboxylating) activity1.96E-03
54GO:0035250: UDP-galactosyltransferase activity1.96E-03
55GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor1.96E-03
56GO:0004550: nucleoside diphosphate kinase activity1.96E-03
57GO:0005528: FK506 binding2.06E-03
58GO:0001053: plastid sigma factor activity2.63E-03
59GO:0004845: uracil phosphoribosyltransferase activity2.63E-03
60GO:0004345: glucose-6-phosphate dehydrogenase activity2.63E-03
61GO:0016987: sigma factor activity2.63E-03
62GO:0009044: xylan 1,4-beta-xylosidase activity2.63E-03
63GO:0043495: protein anchor2.63E-03
64GO:0005253: anion channel activity2.63E-03
65GO:0003841: 1-acylglycerol-3-phosphate O-acyltransferase activity2.63E-03
66GO:0046556: alpha-L-arabinofuranosidase activity2.63E-03
67GO:0051537: 2 iron, 2 sulfur cluster binding2.87E-03
68GO:0022891: substrate-specific transmembrane transporter activity2.98E-03
69GO:0008725: DNA-3-methyladenine glycosylase activity3.37E-03
70GO:0003690: double-stranded DNA binding3.97E-03
71GO:0005247: voltage-gated chloride channel activity4.17E-03
72GO:0031177: phosphopantetheine binding4.17E-03
73GO:0042578: phosphoric ester hydrolase activity4.17E-03
74GO:0016688: L-ascorbate peroxidase activity4.17E-03
75GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity5.02E-03
76GO:0004849: uridine kinase activity5.02E-03
77GO:0000035: acyl binding5.02E-03
78GO:0004602: glutathione peroxidase activity5.02E-03
79GO:0004601: peroxidase activity5.03E-03
80GO:0008235: metalloexopeptidase activity5.94E-03
81GO:0016491: oxidoreductase activity6.65E-03
82GO:0000036: ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process6.90E-03
83GO:0004034: aldose 1-epimerase activity6.90E-03
84GO:0004033: aldo-keto reductase (NADP) activity6.90E-03
85GO:0016597: amino acid binding6.90E-03
86GO:0015112: nitrate transmembrane transporter activity1.01E-02
87GO:0008047: enzyme activator activity1.13E-02
88GO:0004177: aminopeptidase activity1.25E-02
89GO:0050661: NADP binding1.39E-02
90GO:0031072: heat shock protein binding1.51E-02
91GO:0008146: sulfotransferase activity1.78E-02
92GO:0045330: aspartyl esterase activity2.35E-02
93GO:0004650: polygalacturonase activity2.76E-02
94GO:0030599: pectinesterase activity2.84E-02
95GO:0003756: protein disulfide isomerase activity2.86E-02
96GO:0047134: protein-disulfide reductase activity3.03E-02
97GO:0015035: protein disulfide oxidoreductase activity3.11E-02
98GO:0046933: proton-transporting ATP synthase activity, rotational mechanism3.38E-02
99GO:0004791: thioredoxin-disulfide reductase activity3.55E-02
100GO:0016853: isomerase activity3.55E-02
101GO:0050662: coenzyme binding3.55E-02
102GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor4.30E-02
103GO:0009055: electron carrier activity4.81E-02
RankGO TermAdjusted P value
1GO:0009575: chromoplast stroma0.00E+00
2GO:0005943: phosphatidylinositol 3-kinase complex, class IA0.00E+00
3GO:0044391: ribosomal subunit0.00E+00
4GO:0009515: granal stacked thylakoid0.00E+00
5GO:0009507: chloroplast5.43E-114
6GO:0009535: chloroplast thylakoid membrane7.26E-70
7GO:0009570: chloroplast stroma6.93E-69
8GO:0009941: chloroplast envelope2.06E-62
9GO:0009579: thylakoid4.96E-57
10GO:0009534: chloroplast thylakoid7.29E-44
11GO:0009543: chloroplast thylakoid lumen2.08E-30
12GO:0005840: ribosome1.04E-26
13GO:0031977: thylakoid lumen2.98E-22
14GO:0009654: photosystem II oxygen evolving complex1.19E-14
15GO:0030095: chloroplast photosystem II1.43E-11
16GO:0019898: extrinsic component of membrane3.59E-11
17GO:0010319: stromule6.15E-09
18GO:0000311: plastid large ribosomal subunit3.93E-08
19GO:0031969: chloroplast membrane8.19E-08
20GO:0010287: plastoglobule1.95E-07
21GO:0016020: membrane1.02E-05
22GO:0015934: large ribosomal subunit2.09E-05
23GO:0009706: chloroplast inner membrane2.19E-05
24GO:0010007: magnesium chelatase complex2.33E-05
25GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)2.91E-05
26GO:0009522: photosystem I4.35E-05
27GO:0048046: apoplast8.06E-05
28GO:0000312: plastid small ribosomal subunit1.15E-04
29GO:0043674: columella3.86E-04
30GO:0009783: photosystem II antenna complex3.86E-04
31GO:0009344: nitrite reductase complex [NAD(P)H]3.86E-04
32GO:0009547: plastid ribosome3.86E-04
33GO:0009538: photosystem I reaction center4.40E-04
34GO:0009523: photosystem II5.74E-04
35GO:0000427: plastid-encoded plastid RNA polymerase complex8.38E-04
36GO:0042170: plastid membrane8.38E-04
37GO:0009295: nucleoid8.62E-04
38GO:0009536: plastid1.95E-03
39GO:0042646: plastid nucleoid1.96E-03
40GO:0005960: glycine cleavage complex1.96E-03
41GO:0042651: thylakoid membrane2.27E-03
42GO:0015935: small ribosomal subunit2.49E-03
43GO:0009517: PSII associated light-harvesting complex II2.63E-03
44GO:0055035: plastid thylakoid membrane3.37E-03
45GO:0034707: chloride channel complex4.17E-03
46GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1)4.17E-03
47GO:0016363: nuclear matrix5.02E-03
48GO:0009533: chloroplast stromal thylakoid5.94E-03
49GO:0042807: central vacuole5.94E-03
50GO:0009539: photosystem II reaction center7.92E-03
51GO:0022626: cytosolic ribosome8.52E-03
52GO:0005763: mitochondrial small ribosomal subunit8.99E-03
53GO:0032040: small-subunit processome1.38E-02
54GO:0009508: plastid chromosome1.51E-02
55GO:0022627: cytosolic small ribosomal subunit1.71E-02
56GO:0030076: light-harvesting complex1.78E-02
57GO:0022625: cytosolic large ribosomal subunit2.91E-02
58GO:0071944: cell periphery4.30E-02
59GO:0009505: plant-type cell wall4.45E-02
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Gene type



Gene DE type