gene detail

Gene description

TAIR ID: AT4G29060

Short description: elongation factor Ts family protein

Pathogen responsiveness: 0.53

General responsiveness: 2.13

Orthologous

Rice:

OS12G0541500

Maize: No orthologous gene

Wheat: No orthologous gene

GO biological process

mitochondrial translational elongation, response to cadmium ion, translational elongation, embryo development ending in seed dormancy

GO cellular component

chloroplast envelope, mitochondrial matrix, chloroplast stroma, chloroplast, mitochondrion

GO molecular function

translation elongation factor activity

Protein domain

Pfam	PF00889, Elongation factor TS
Pfam	PF00575, S1 RNA binding domain
SMART	SM00316, S1

Metabolic pathway

Not involved in metabolic pathway

KEGG pathway

Not involved in KEGG pathway

Transcriptional regulation

Regulator:
AT1G24260

Target:
none

Protein-protein interaction network

The number of partners (degree) is: 2

click to view PPI network

Coexpression network

GSE45212_WT_PSTDC3000_AVRRPT2  view
GSE26679_WT_GC  view
GSE56094_WT_HRPA-  view
GSE13739_WT_GO  view
GSE13739_EDS16_GO  view
GSE5686_WT_GO  view
GSE56094_WT_PSTDC3000  view
GSE45212_MED14_PSTDC3000_AVRRPT2  view

Differentially expressed condition

32 conditions

Series	Control	Treatment	Log₂FC	Adj. P value
GSE17464	Laer, control	Laer, Flg22 2 h	-1.65	2.94E-03
GSE17464	Penta, control	Penta, Flg22 2 h	-1.50	6.70E-03
GSE17500	Col, 35S:AFB1, control 0 h	Col, 35S:AFB1, PstDC3000 24 h	-1.86	2.22E-04
GSE17500	Col, WT, control 0 h	Col, WT, PstDC3000 24 h	-2.20	3.19E-05
GSE17500	Col, miR393, control 0 h	Col, miR393, PstDC3000 24 h	-1.84	2.07E-04
GSE18978	Col, WT, control 24 h	Col, WT, PsmES4326 24 h	-3.92	3.52E-11
GSE21920	Col, WT, mock	Col, WT, Pto HopZ1a 6 h	-2.19	8.78E-06
GSE40544	Col, WT, control	Col, WT, PstDC3000 EV	-1.96	3.42E-03
GSE45212	Col, WT, PstDC3000 AvrRpt2 0 h	Col, WT, PstDC3000 AvrRpt2 12 h	-3.19	4.03E-13
GSE45212	Col, WT, PstDC3000 AvrRpt2 0 h	Col, WT, PstDC3000 AvrRpt2 4 h	-1.65	1.48E-08
GSE45212	Col, WT, PstDC3000 AvrRpt2 0 h	Col, WT, PstDC3000 AvrRpt2 8 h	-2.40	3.23E-11
GSE45212	Col, med14, PstDC3000 AvrRpt2 0 h	Col, med14, PstDC3000 AvrRpt2 12 h	-2.72	4.43E-12
GSE45212	Col, med14, PstDC3000 AvrRpt2 0 h	Col, med14, PstDC3000 AvrRpt2 4 h	-2.52	1.53E-11
GSE45212	Col, med14, PstDC3000 AvrRpt2 0 h	Col, med14, PstDC3000 AvrRpt2 8 h	-2.90	1.48E-12
GSE45214	Col, med16, PstDC3000 AvrRpt2 0 h	Col, med16, PstDC3000 AvrRpt2 4 h	-2.21	3.74E-12
GSE5520	Col, WT, control 10 h	Col, WT, Cor- 10 h	-2.74	4.02E-04
GSE5520	Col, WT, control 7 h	Col, WT, PstDC3000 7 h	-3.76	4.29E-07
GSE56094	Col, WT, control 10 h	Col, WT, PstDC3000 10 h	-2.78	7.46E-16
GSE56094	Col, WT, control 10 h	Col, WT, hrpA- 10 h	-1.81	1.27E-07
GSE56094	Col, WT, control 11 h	Col, WT, PstDC3000 11 h	-2.64	3.08E-14
GSE56094	Col, WT, control 11 h	Col, WT, hrpA- 11 h	-1.82	7.90E-08
GSE56094	Col, WT, control 12 h	Col, WT, PstDC3000 12 h	-2.44	8.39E-13
GSE56094	Col, WT, control 13 h	Col, WT, PstDC3000 13 h	-2.62	1.94E-14
GSE56094	Col, WT, control 6 h	Col, WT, PstDC3000 6 h	-1.56	4.60E-06
GSE56094	Col, WT, control 7 h	Col, WT, PstDC3000 7 h	-1.82	1.05E-07
GSE56094	Col, WT, control 7 h	Col, WT, hrpA- 7 h	-1.76	5.33E-07
GSE56094	Col, WT, control 8 h	Col, WT, PstDC3000 8 h	-1.97	2.58E-09
GSE56094	Col, WT, control 8 h	Col, WT, hrpA- 8 h	-1.77	2.02E-07
GSE56094	Col, WT, control 9 h	Col, WT, PstDC3000 9 h	-2.44	2.06E-12
GSE56094	Col, WT, control 9 h	Col, WT, hrpA- 9 h	-2.01	1.03E-08
GSE58954	Col, WT, Psm AvrRpt2 0 h	Col, WT, Psm AvrRpt2 6 h	-1.58	3.01E-03
GSE6176	Col, WT, control 12 h	Col, WT, PstDC3000 12 h	-1.92	7.31E-04