Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT4G29060

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0006399: tRNA metabolic process0.00E+00
2GO:0006437: tyrosyl-tRNA aminoacylation0.00E+00
3GO:0008064: regulation of actin polymerization or depolymerization0.00E+00
4GO:0051493: regulation of cytoskeleton organization0.00E+00
5GO:0002184: cytoplasmic translational termination0.00E+00
6GO:0046719: regulation by virus of viral protein levels in host cell0.00E+00
7GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation0.00E+00
8GO:0006223: uracil salvage0.00E+00
9GO:0016553: base conversion or substitution editing0.00E+00
10GO:0006428: isoleucyl-tRNA aminoacylation0.00E+00
11GO:0042407: cristae formation0.00E+00
12GO:0070272: proton-transporting ATP synthase complex biogenesis0.00E+00
13GO:0006573: valine metabolic process0.00E+00
14GO:0009658: chloroplast organization2.76E-08
15GO:0010020: chloroplast fission1.10E-06
16GO:0006695: cholesterol biosynthetic process3.02E-06
17GO:0006412: translation5.05E-06
18GO:0032544: plastid translation7.67E-06
19GO:0006633: fatty acid biosynthetic process1.44E-05
20GO:0043572: plastid fission2.46E-05
21GO:0007017: microtubule-based process9.04E-05
22GO:0006418: tRNA aminoacylation for protein translation9.04E-05
23GO:0016117: carotenoid biosynthetic process1.72E-04
24GO:0006551: leucine metabolic process2.55E-04
25GO:0006430: lysyl-tRNA aminoacylation2.55E-04
26GO:0043489: RNA stabilization2.55E-04
27GO:0010442: guard cell morphogenesis2.55E-04
28GO:0071482: cellular response to light stimulus2.94E-04
29GO:0006457: protein folding3.49E-04
30GO:0045337: farnesyl diphosphate biosynthetic process3.55E-04
31GO:0033384: geranyl diphosphate biosynthetic process3.55E-04
32GO:0006949: syncytium formation4.92E-04
33GO:0006423: cysteinyl-tRNA aminoacylation5.64E-04
34GO:0071258: cellular response to gravity5.64E-04
35GO:0010270: photosystem II oxygen evolving complex assembly5.64E-04
36GO:0010424: DNA methylation on cytosine within a CG sequence5.64E-04
37GO:0043039: tRNA aminoacylation5.64E-04
38GO:0052541: plant-type cell wall cellulose metabolic process5.64E-04
39GO:0010069: zygote asymmetric cytokinesis in embryo sac5.64E-04
40GO:0006415: translational termination5.68E-04
41GO:0006352: DNA-templated transcription, initiation5.68E-04
42GO:0006696: ergosterol biosynthetic process9.15E-04
43GO:0006617: SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition9.15E-04
44GO:0042742: defense response to bacterium9.51E-04
45GO:0010088: phloem development1.31E-03
46GO:2001141: regulation of RNA biosynthetic process1.31E-03
47GO:0016556: mRNA modification1.31E-03
48GO:0051085: chaperone mediated protein folding requiring cofactor1.31E-03
49GO:0006241: CTP biosynthetic process1.31E-03
50GO:0019048: modulation by virus of host morphology or physiology1.31E-03
51GO:0006424: glutamyl-tRNA aminoacylation1.31E-03
52GO:0006165: nucleoside diphosphate phosphorylation1.31E-03
53GO:0006228: UTP biosynthetic process1.31E-03
54GO:0031048: chromatin silencing by small RNA1.31E-03
55GO:0009831: plant-type cell wall modification involved in multidimensional cell growth1.63E-03
56GO:0044206: UMP salvage1.75E-03
57GO:0006808: regulation of nitrogen utilization1.75E-03
58GO:0006479: protein methylation1.75E-03
59GO:0051322: anaphase1.75E-03
60GO:0009765: photosynthesis, light harvesting1.75E-03
61GO:0006183: GTP biosynthetic process1.75E-03
62GO:0006546: glycine catabolic process1.75E-03
63GO:0006021: inositol biosynthetic process1.75E-03
64GO:0051567: histone H3-K9 methylation1.75E-03
65GO:0071483: cellular response to blue light1.75E-03
66GO:0009902: chloroplast relocation1.75E-03
67GO:0000413: protein peptidyl-prolyl isomerization2.07E-03
68GO:0045038: protein import into chloroplast thylakoid membrane2.23E-03
69GO:0043097: pyrimidine nucleoside salvage2.23E-03
70GO:0016123: xanthophyll biosynthetic process2.23E-03
71GO:0032543: mitochondrial translation2.23E-03
72GO:0048359: mucilage metabolic process involved in seed coat development2.23E-03
73GO:0016120: carotene biosynthetic process2.23E-03
74GO:0008360: regulation of cell shape2.24E-03
75GO:0009735: response to cytokinin2.69E-03
76GO:0006014: D-ribose metabolic process2.75E-03
77GO:0006354: DNA-templated transcription, elongation2.75E-03
78GO:0042549: photosystem II stabilization2.75E-03
79GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway2.75E-03
80GO:0006555: methionine metabolic process2.75E-03
81GO:0006796: phosphate-containing compound metabolic process2.75E-03
82GO:0006828: manganese ion transport2.75E-03
83GO:0006206: pyrimidine nucleobase metabolic process2.75E-03
84GO:0016458: gene silencing2.75E-03
85GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway2.89E-03
86GO:0009099: valine biosynthetic process3.30E-03
87GO:0009854: oxidative photosynthetic carbon pathway3.30E-03
88GO:0048444: floral organ morphogenesis3.30E-03
89GO:0010555: response to mannitol3.30E-03
90GO:0009082: branched-chain amino acid biosynthetic process3.30E-03
91GO:0042026: protein refolding3.30E-03
92GO:0009828: plant-type cell wall loosening3.33E-03
93GO:0045454: cell redox homeostasis3.61E-03
94GO:0006955: immune response3.89E-03
95GO:0048528: post-embryonic root development3.89E-03
96GO:0006614: SRP-dependent cotranslational protein targeting to membrane3.89E-03
97GO:0010027: thylakoid membrane organization3.97E-03
98GO:0009790: embryo development4.44E-03
99GO:0000105: histidine biosynthetic process4.52E-03
100GO:0010928: regulation of auxin mediated signaling pathway4.52E-03
101GO:0009642: response to light intensity4.52E-03
102GO:0015995: chlorophyll biosynthetic process4.68E-03
103GO:0006075: (1->3)-beta-D-glucan biosynthetic process5.18E-03
104GO:0048481: plant ovule development5.18E-03
105GO:0009817: defense response to fungus, incompatible interaction5.18E-03
106GO:0009097: isoleucine biosynthetic process5.18E-03
107GO:0009657: plastid organization5.18E-03
108GO:0048589: developmental growth5.86E-03
109GO:0015780: nucleotide-sugar transport5.86E-03
110GO:0006783: heme biosynthetic process5.86E-03
111GO:0009637: response to blue light6.56E-03
112GO:0043067: regulation of programmed cell death6.58E-03
113GO:0006779: porphyrin-containing compound biosynthetic process6.58E-03
114GO:0035999: tetrahydrofolate interconversion6.58E-03
115GO:0006349: regulation of gene expression by genetic imprinting6.58E-03
116GO:0030422: production of siRNA involved in RNA interference7.33E-03
117GO:0045036: protein targeting to chloroplast7.33E-03
118GO:0006782: protoporphyrinogen IX biosynthetic process7.33E-03
119GO:0006631: fatty acid metabolic process7.80E-03
120GO:0018119: peptidyl-cysteine S-nitrosylation8.11E-03
121GO:0010216: maintenance of DNA methylation8.11E-03
122GO:0006816: calcium ion transport8.11E-03
123GO:0009773: photosynthetic electron transport in photosystem I8.11E-03
124GO:0009073: aromatic amino acid family biosynthetic process8.11E-03
125GO:0045037: protein import into chloroplast stroma8.92E-03
126GO:0006790: sulfur compound metabolic process8.92E-03
127GO:0009718: anthocyanin-containing compound biosynthetic process9.75E-03
128GO:0042254: ribosome biogenesis9.81E-03
129GO:0009664: plant-type cell wall organization1.06E-02
130GO:0009934: regulation of meristem structural organization1.06E-02
131GO:0010207: photosystem II assembly1.06E-02
132GO:0090351: seedling development1.15E-02
133GO:0046854: phosphatidylinositol phosphorylation1.15E-02
134GO:0006071: glycerol metabolic process1.24E-02
135GO:0007010: cytoskeleton organization1.34E-02
136GO:0019344: cysteine biosynthetic process1.34E-02
137GO:0009116: nucleoside metabolic process1.34E-02
138GO:0080147: root hair cell development1.34E-02
139GO:0051302: regulation of cell division1.43E-02
140GO:0008299: isoprenoid biosynthetic process1.43E-02
141GO:0010026: trichome differentiation1.43E-02
142GO:0015979: photosynthesis1.49E-02
143GO:0016998: cell wall macromolecule catabolic process1.53E-02
144GO:0006306: DNA methylation1.53E-02
145GO:0007005: mitochondrion organization1.64E-02
146GO:0006730: one-carbon metabolic process1.64E-02
147GO:0080092: regulation of pollen tube growth1.64E-02
148GO:0006396: RNA processing1.68E-02
149GO:0009294: DNA mediated transformation1.74E-02
150GO:0009411: response to UV1.74E-02
151GO:0009409: response to cold1.81E-02
152GO:0019722: calcium-mediated signaling1.85E-02
153GO:0006629: lipid metabolic process2.06E-02
154GO:0000226: microtubule cytoskeleton organization2.07E-02
155GO:0010197: polar nucleus fusion2.18E-02
156GO:0006342: chromatin silencing2.18E-02
157GO:0009958: positive gravitropism2.18E-02
158GO:0007018: microtubule-based movement2.29E-02
159GO:0046686: response to cadmium ion2.30E-02
160GO:0019252: starch biosynthetic process2.41E-02
161GO:0016036: cellular response to phosphate starvation2.64E-02
162GO:0032502: developmental process2.65E-02
163GO:0007264: small GTPase mediated signal transduction2.65E-02
164GO:0016032: viral process2.65E-02
165GO:0007267: cell-cell signaling3.03E-02
166GO:0051607: defense response to virus3.16E-02
167GO:0000910: cytokinesis3.16E-02
168GO:0009816: defense response to bacterium, incompatible interaction3.42E-02
169GO:0009627: systemic acquired resistance3.56E-02
170GO:0016311: dephosphorylation3.83E-02
171GO:0018298: protein-chromophore linkage3.97E-02
172GO:0008219: cell death3.97E-02
173GO:0048767: root hair elongation4.12E-02
174GO:0009813: flavonoid biosynthetic process4.12E-02
175GO:0009826: unidimensional cell growth4.20E-02
176GO:0009910: negative regulation of flower development4.41E-02
177GO:0009631: cold acclimation4.41E-02
178GO:0009793: embryo development ending in seed dormancy4.43E-02
179GO:0009853: photorespiration4.70E-02
180GO:0045087: innate immune response4.70E-02
181GO:0016051: carbohydrate biosynthetic process4.70E-02
RankGO TermAdjusted P value
1GO:0004822: isoleucine-tRNA ligase activity0.00E+00
2GO:0004401: histidinol-phosphatase activity0.00E+00
3GO:0004314: [acyl-carrier-protein] S-malonyltransferase activity0.00E+00
4GO:0046905: phytoene synthase activity0.00E+00
5GO:0016767: geranylgeranyl-diphosphate geranylgeranyltransferase activity0.00E+00
6GO:0004318: enoyl-[acyl-carrier-protein] reductase (NADH) activity0.00E+00
7GO:0052834: inositol monophosphate phosphatase activity0.00E+00
8GO:0005048: signal sequence binding0.00E+00
9GO:0009974: zeinoxanthin epsilon hydroxylase activity0.00E+00
10GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity0.00E+00
11GO:0047450: crotonoyl-[acyl-carrier-protein] hydratase activity0.00E+00
12GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity0.00E+00
13GO:0016631: enoyl-[acyl-carrier-protein] reductase activity0.00E+00
14GO:0008887: glycerate kinase activity0.00E+00
15GO:0050518: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity0.00E+00
16GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity0.00E+00
17GO:0045435: lycopene epsilon cyclase activity0.00E+00
18GO:0051920: peroxiredoxin activity1.38E-08
19GO:0019843: rRNA binding2.15E-08
20GO:0016209: antioxidant activity4.91E-08
21GO:0019171: 3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity3.02E-06
22GO:0003735: structural constituent of ribosome5.06E-06
23GO:0016149: translation release factor activity, codon specific2.46E-05
24GO:0001053: plastid sigma factor activity4.46E-05
25GO:0016987: sigma factor activity4.46E-05
26GO:0004812: aminoacyl-tRNA ligase activity1.72E-04
27GO:0003755: peptidyl-prolyl cis-trans isomerase activity1.98E-04
28GO:0051996: squalene synthase activity2.55E-04
29GO:0010347: L-galactose-1-phosphate phosphatase activity2.55E-04
30GO:0004824: lysine-tRNA ligase activity2.55E-04
31GO:0042834: peptidoglycan binding2.55E-04
32GO:0004831: tyrosine-tRNA ligase activity2.55E-04
33GO:0004655: porphobilinogen synthase activity2.55E-04
34GO:0003984: acetolactate synthase activity2.55E-04
35GO:0004489: methylenetetrahydrofolate reductase (NAD(P)H) activity2.55E-04
36GO:0003747: translation release factor activity3.55E-04
37GO:0004337: geranyltranstransferase activity3.55E-04
38GO:0008237: metallopeptidase activity4.00E-04
39GO:0005200: structural constituent of cytoskeleton4.00E-04
40GO:0004047: aminomethyltransferase activity5.64E-04
41GO:0052832: inositol monophosphate 3-phosphatase activity5.64E-04
42GO:0004817: cysteine-tRNA ligase activity5.64E-04
43GO:0008934: inositol monophosphate 1-phosphatase activity5.64E-04
44GO:0052833: inositol monophosphate 4-phosphatase activity5.64E-04
45GO:0004310: farnesyl-diphosphate farnesyltransferase activity5.64E-04
46GO:0004161: dimethylallyltranstransferase activity5.68E-04
47GO:0005089: Rho guanyl-nucleotide exchange factor activity5.68E-04
48GO:0008266: poly(U) RNA binding8.30E-04
49GO:0030267: glyoxylate reductase (NADP) activity9.15E-04
50GO:0005504: fatty acid binding9.15E-04
51GO:0017150: tRNA dihydrouridine synthase activity9.15E-04
52GO:0003913: DNA photolyase activity9.15E-04
53GO:0002161: aminoacyl-tRNA editing activity9.15E-04
54GO:0004148: dihydrolipoyl dehydrogenase activity9.15E-04
55GO:0003924: GTPase activity1.15E-03
56GO:0004550: nucleoside diphosphate kinase activity1.31E-03
57GO:0035197: siRNA binding1.31E-03
58GO:0043023: ribosomal large subunit binding1.31E-03
59GO:0008097: 5S rRNA binding1.31E-03
60GO:0008276: protein methyltransferase activity1.31E-03
61GO:0004176: ATP-dependent peptidase activity1.37E-03
62GO:0004845: uracil phosphoribosyltransferase activity1.75E-03
63GO:0016836: hydro-lyase activity1.75E-03
64GO:0008574: ATP-dependent microtubule motor activity, plus-end-directed1.75E-03
65GO:0004045: aminoacyl-tRNA hydrolase activity1.75E-03
66GO:0045430: chalcone isomerase activity1.75E-03
67GO:0004607: phosphatidylcholine-sterol O-acyltransferase activity1.75E-03
68GO:0003899: DNA-directed 5'-3' RNA polymerase activity1.75E-03
69GO:0004601: peroxidase activity1.98E-03
70GO:0005525: GTP binding2.16E-03
71GO:0004040: amidase activity2.23E-03
72GO:0008374: O-acyltransferase activity2.23E-03
73GO:0016773: phosphotransferase activity, alcohol group as acceptor2.23E-03
74GO:0051082: unfolded protein binding2.74E-03
75GO:0016462: pyrophosphatase activity2.75E-03
76GO:0003886: DNA (cytosine-5-)-methyltransferase activity3.30E-03
77GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity3.30E-03
78GO:0004849: uridine kinase activity3.30E-03
79GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity3.30E-03
80GO:0102391: decanoate--CoA ligase activity3.30E-03
81GO:0004747: ribokinase activity3.30E-03
82GO:0004467: long-chain fatty acid-CoA ligase activity3.89E-03
83GO:0016831: carboxy-lyase activity3.89E-03
84GO:0004427: inorganic diphosphatase activity3.89E-03
85GO:0009881: photoreceptor activity3.89E-03
86GO:0004033: aldo-keto reductase (NADP) activity4.52E-03
87GO:0008865: fructokinase activity4.52E-03
88GO:0008312: 7S RNA binding4.52E-03
89GO:0003843: 1,3-beta-D-glucan synthase activity5.18E-03
90GO:0004222: metalloendopeptidase activity5.71E-03
91GO:0008889: glycerophosphodiester phosphodiesterase activity5.86E-03
92GO:0005384: manganese ion transmembrane transporter activity6.58E-03
93GO:0003729: mRNA binding7.10E-03
94GO:0044183: protein binding involved in protein folding8.11E-03
95GO:0005524: ATP binding8.59E-03
96GO:0004521: endoribonuclease activity8.92E-03
97GO:0000049: tRNA binding8.92E-03
98GO:0043621: protein self-association9.16E-03
99GO:0000287: magnesium ion binding9.35E-03
100GO:0005198: structural molecule activity9.53E-03
101GO:0016887: ATPase activity9.66E-03
102GO:0015095: magnesium ion transmembrane transporter activity9.75E-03
103GO:0031072: heat shock protein binding9.75E-03
104GO:0004565: beta-galactosidase activity9.75E-03
105GO:0008081: phosphoric diester hydrolase activity9.75E-03
106GO:0019706: protein-cysteine S-palmitoyltransferase activity1.53E-02
107GO:0016740: transferase activity1.60E-02
108GO:0003727: single-stranded RNA binding1.85E-02
109GO:0008514: organic anion transmembrane transporter activity1.85E-02
110GO:0005199: structural constituent of cell wall2.18E-02
111GO:0050662: coenzyme binding2.29E-02
112GO:0008017: microtubule binding2.96E-02
113GO:0008483: transaminase activity3.03E-02
114GO:0016597: amino acid binding3.16E-02
115GO:0042802: identical protein binding3.59E-02
116GO:0008236: serine-type peptidase activity3.83E-02
117GO:0000982: transcription factor activity, RNA polymerase II core promoter proximal region sequence-specific binding3.83E-02
118GO:0003682: chromatin binding4.60E-02
119GO:0003746: translation elongation factor activity4.70E-02
120GO:0000987: core promoter proximal region sequence-specific DNA binding4.85E-02
121GO:0003993: acid phosphatase activity4.85E-02
RankGO TermAdjusted P value
1GO:0005948: acetolactate synthase complex0.00E+00
2GO:0005835: fatty acid synthase complex0.00E+00
3GO:0070971: endoplasmic reticulum exit site0.00E+00
4GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex0.00E+00
5GO:0009507: chloroplast3.07E-45
6GO:0009570: chloroplast stroma1.16E-44
7GO:0009941: chloroplast envelope5.70E-26
8GO:0009579: thylakoid2.03E-13
9GO:0000311: plastid large ribosomal subunit7.38E-09
10GO:0009535: chloroplast thylakoid membrane2.13E-07
11GO:0031977: thylakoid lumen4.03E-07
12GO:0009543: chloroplast thylakoid lumen4.48E-07
13GO:0009536: plastid3.34E-06
14GO:0009534: chloroplast thylakoid8.65E-06
15GO:0000428: DNA-directed RNA polymerase complex2.55E-04
16GO:0009547: plastid ribosome2.55E-04
17GO:0046658: anchored component of plasma membrane2.94E-04
18GO:0045298: tubulin complex3.55E-04
19GO:0010319: stromule4.00E-04
20GO:0009706: chloroplast inner membrane4.45E-04
21GO:0005874: microtubule5.46E-04
22GO:0080085: signal recognition particle, chloroplast targeting5.64E-04
23GO:0031969: chloroplast membrane5.80E-04
24GO:0000312: plastid small ribosomal subunit8.30E-04
25GO:0005875: microtubule associated complex1.03E-03
26GO:0005840: ribosome1.05E-03
27GO:0009654: photosystem II oxygen evolving complex1.25E-03
28GO:0005719: nuclear euchromatin1.31E-03
29GO:0009532: plastid stroma1.37E-03
30GO:0031225: anchored component of membrane1.94E-03
31GO:0072686: mitotic spindle2.23E-03
32GO:0019898: extrinsic component of membrane2.57E-03
33GO:0000793: condensed chromosome2.75E-03
34GO:0022626: cytosolic ribosome2.91E-03
35GO:0005762: mitochondrial large ribosomal subunit3.30E-03
36GO:0009295: nucleoid3.54E-03
37GO:0000794: condensed nuclear chromosome3.89E-03
38GO:0009533: chloroplast stromal thylakoid3.89E-03
39GO:0030529: intracellular ribonucleoprotein complex3.97E-03
40GO:0009505: plant-type cell wall5.07E-03
41GO:0000148: 1,3-beta-D-glucan synthase complex5.18E-03
42GO:0009539: photosystem II reaction center5.18E-03
43GO:0005786: signal recognition particle, endoplasmic reticulum targeting5.18E-03
44GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)5.86E-03
45GO:0000922: spindle pole5.86E-03
46GO:0048046: apoplast5.91E-03
47GO:0015030: Cajal body6.58E-03
48GO:0055028: cortical microtubule7.33E-03
49GO:0016324: apical plasma membrane7.33E-03
50GO:0009574: preprophase band9.75E-03
51GO:0030659: cytoplasmic vesicle membrane1.06E-02
52GO:0030095: chloroplast photosystem II1.06E-02
53GO:0042651: thylakoid membrane1.43E-02
54GO:0010287: plastoglobule1.94E-02
55GO:0005871: kinesin complex1.95E-02
56GO:0005623: cell2.10E-02
57GO:0022627: cytosolic small ribosomal subunit3.74E-02
58GO:0005618: cell wall4.52E-02
Gene type



Gene DE type