Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT4G29060

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0002184: cytoplasmic translational termination0.00E+00
2GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate0.00E+00
3GO:0000455: enzyme-directed rRNA pseudouridine synthesis0.00E+00
4GO:0017038: protein import0.00E+00
5GO:0046460: neutral lipid biosynthetic process0.00E+00
6GO:0090279: regulation of calcium ion import0.00E+00
7GO:0031116: positive regulation of microtubule polymerization0.00E+00
8GO:0000489: maturation of SSU-rRNA from tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA)0.00E+00
9GO:0042820: vitamin B6 catabolic process0.00E+00
10GO:0042407: cristae formation0.00E+00
11GO:0042821: pyridoxal biosynthetic process0.00E+00
12GO:0042817: pyridoxal metabolic process0.00E+00
13GO:0090042: tubulin deacetylation0.00E+00
14GO:0015882: L-ascorbic acid transport0.00E+00
15GO:0051050: positive regulation of transport0.00E+00
16GO:0000488: maturation of LSU-rRNA from tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA)0.00E+00
17GO:0018023: peptidyl-lysine trimethylation0.00E+00
18GO:0071474: cellular hyperosmotic response0.00E+00
19GO:0010157: response to chlorate0.00E+00
20GO:0006399: tRNA metabolic process0.00E+00
21GO:0051484: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway involved in terpenoid biosynthetic process0.00E+00
22GO:0009658: chloroplast organization5.58E-06
23GO:0032544: plastid translation2.33E-05
24GO:0009793: embryo development ending in seed dormancy5.17E-05
25GO:0045038: protein import into chloroplast thylakoid membrane1.50E-04
26GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway2.14E-04
27GO:0042793: transcription from plastid promoter2.14E-04
28GO:1902458: positive regulation of stomatal opening4.02E-04
29GO:0010028: xanthophyll cycle4.02E-04
30GO:0000023: maltose metabolic process4.02E-04
31GO:0006419: alanyl-tRNA aminoacylation4.02E-04
32GO:0000476: maturation of 4.5S rRNA4.02E-04
33GO:0009443: pyridoxal 5'-phosphate salvage4.02E-04
34GO:0000967: rRNA 5'-end processing4.02E-04
35GO:0043266: regulation of potassium ion transport4.02E-04
36GO:0042547: cell wall modification involved in multidimensional cell growth4.02E-04
37GO:0042371: vitamin K biosynthetic process4.02E-04
38GO:0043087: regulation of GTPase activity4.02E-04
39GO:2000021: regulation of ion homeostasis4.02E-04
40GO:2000070: regulation of response to water deprivation4.66E-04
41GO:0000105: histidine biosynthetic process4.66E-04
42GO:0071482: cellular response to light stimulus5.69E-04
43GO:1900865: chloroplast RNA modification8.05E-04
44GO:1903426: regulation of reactive oxygen species biosynthetic process8.71E-04
45GO:0051262: protein tetramerization8.71E-04
46GO:0034470: ncRNA processing8.71E-04
47GO:0010198: synergid death8.71E-04
48GO:0006739: NADP metabolic process8.71E-04
49GO:0009629: response to gravity8.71E-04
50GO:1900871: chloroplast mRNA modification8.71E-04
51GO:0006432: phenylalanyl-tRNA aminoacylation8.71E-04
52GO:0007154: cell communication8.71E-04
53GO:0018026: peptidyl-lysine monomethylation8.71E-04
54GO:0006423: cysteinyl-tRNA aminoacylation8.71E-04
55GO:0006435: threonyl-tRNA aminoacylation8.71E-04
56GO:0009220: pyrimidine ribonucleotide biosynthetic process8.71E-04
57GO:0042550: photosystem I stabilization8.71E-04
58GO:0001682: tRNA 5'-leader removal8.71E-04
59GO:0006782: protoporphyrinogen IX biosynthetic process9.37E-04
60GO:0045036: protein targeting to chloroplast9.37E-04
61GO:0010027: thylakoid membrane organization1.07E-03
62GO:0006352: DNA-templated transcription, initiation1.08E-03
63GO:0005983: starch catabolic process1.23E-03
64GO:0045037: protein import into chloroplast stroma1.23E-03
65GO:0015995: chlorophyll biosynthetic process1.32E-03
66GO:0030261: chromosome condensation1.41E-03
67GO:0033591: response to L-ascorbic acid1.41E-03
68GO:0051604: protein maturation1.41E-03
69GO:0015940: pantothenate biosynthetic process1.41E-03
70GO:0006617: SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition1.41E-03
71GO:0001578: microtubule bundle formation1.41E-03
72GO:0045493: xylan catabolic process1.41E-03
73GO:0090351: seedling development1.76E-03
74GO:0009102: biotin biosynthetic process2.04E-03
75GO:1901000: regulation of response to salt stress2.04E-03
76GO:0010601: positive regulation of auxin biosynthetic process2.04E-03
77GO:0008615: pyridoxine biosynthetic process2.04E-03
78GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity2.04E-03
79GO:0006164: purine nucleotide biosynthetic process2.04E-03
80GO:0016556: mRNA modification2.04E-03
81GO:2001141: regulation of RNA biosynthetic process2.04E-03
82GO:0009790: embryo development2.19E-03
83GO:0061077: chaperone-mediated protein folding2.65E-03
84GO:0010109: regulation of photosynthesis2.74E-03
85GO:0051322: anaphase2.74E-03
86GO:0009765: photosynthesis, light harvesting2.74E-03
87GO:0007020: microtubule nucleation2.74E-03
88GO:0071483: cellular response to blue light2.74E-03
89GO:0006734: NADH metabolic process2.74E-03
90GO:0044205: 'de novo' UMP biosynthetic process2.74E-03
91GO:0006508: proteolysis3.23E-03
92GO:0016123: xanthophyll biosynthetic process3.51E-03
93GO:0006465: signal peptide processing3.51E-03
94GO:0046785: microtubule polymerization3.51E-03
95GO:0016120: carotene biosynthetic process3.51E-03
96GO:0010236: plastoquinone biosynthetic process3.51E-03
97GO:0016554: cytidine to uridine editing4.35E-03
98GO:0010190: cytochrome b6f complex assembly4.35E-03
99GO:0009920: cell plate formation involved in plant-type cell wall biogenesis4.35E-03
100GO:0032973: amino acid export4.35E-03
101GO:0042372: phylloquinone biosynthetic process5.24E-03
102GO:0006458: 'de novo' protein folding5.24E-03
103GO:0042026: protein refolding5.24E-03
104GO:0034389: lipid particle organization5.24E-03
105GO:1901259: chloroplast rRNA processing5.24E-03
106GO:0030488: tRNA methylation5.24E-03
107GO:0048528: post-embryonic root development6.19E-03
108GO:0009772: photosynthetic electron transport in photosystem II6.19E-03
109GO:0043090: amino acid import6.19E-03
110GO:0048437: floral organ development6.19E-03
111GO:0006614: SRP-dependent cotranslational protein targeting to membrane6.19E-03
112GO:0010196: nonphotochemical quenching6.19E-03
113GO:0010444: guard mother cell differentiation6.19E-03
114GO:0006400: tRNA modification6.19E-03
115GO:0006207: 'de novo' pyrimidine nucleobase biosynthetic process6.19E-03
116GO:0015693: magnesium ion transport6.19E-03
117GO:0006605: protein targeting7.20E-03
118GO:0019375: galactolipid biosynthetic process7.20E-03
119GO:0009704: de-etiolation7.20E-03
120GO:0006353: DNA-templated transcription, termination7.20E-03
121GO:0070413: trehalose metabolism in response to stress7.20E-03
122GO:0000910: cytokinesis7.34E-03
123GO:0009932: cell tip growth8.26E-03
124GO:0022900: electron transport chain8.26E-03
125GO:0009627: systemic acquired resistance8.68E-03
126GO:0098656: anion transmembrane transport9.38E-03
127GO:0009821: alkaloid biosynthetic process9.38E-03
128GO:0010206: photosystem II repair9.38E-03
129GO:0080144: amino acid homeostasis9.38E-03
130GO:0019432: triglyceride biosynthetic process9.38E-03
131GO:0006783: heme biosynthetic process9.38E-03
132GO:0043067: regulation of programmed cell death1.06E-02
133GO:0006779: porphyrin-containing compound biosynthetic process1.06E-02
134GO:0031425: chloroplast RNA processing1.06E-02
135GO:0046686: response to cadmium ion1.09E-02
136GO:0006949: syncytium formation1.18E-02
137GO:0045087: innate immune response1.29E-02
138GO:0009684: indoleacetic acid biosynthetic process1.30E-02
139GO:0010015: root morphogenesis1.30E-02
140GO:0019684: photosynthesis, light reaction1.30E-02
141GO:0009089: lysine biosynthetic process via diaminopimelate1.30E-02
142GO:1903507: negative regulation of nucleic acid-templated transcription1.30E-02
143GO:0006415: translational termination1.30E-02
144GO:0018119: peptidyl-cysteine S-nitrosylation1.30E-02
145GO:0006397: mRNA processing1.47E-02
146GO:2000012: regulation of auxin polar transport1.57E-02
147GO:0006108: malate metabolic process1.57E-02
148GO:0050826: response to freezing1.57E-02
149GO:0006457: protein folding1.60E-02
150GO:0008380: RNA splicing1.62E-02
151GO:0010114: response to red light1.67E-02
152GO:0010207: photosystem II assembly1.71E-02
153GO:0019853: L-ascorbic acid biosynthetic process1.86E-02
154GO:0006071: glycerol metabolic process2.01E-02
155GO:0000162: tryptophan biosynthetic process2.01E-02
156GO:0005992: trehalose biosynthetic process2.16E-02
157GO:0009116: nucleoside metabolic process2.16E-02
158GO:0009409: response to cold2.18E-02
159GO:0008299: isoprenoid biosynthetic process2.32E-02
160GO:0016575: histone deacetylation2.32E-02
161GO:0043622: cortical microtubule organization2.32E-02
162GO:0048511: rhythmic process2.48E-02
163GO:0031408: oxylipin biosynthetic process2.48E-02
164GO:0016114: terpenoid biosynthetic process2.48E-02
165GO:0019748: secondary metabolic process2.64E-02
166GO:0009814: defense response, incompatible interaction2.64E-02
167GO:2000022: regulation of jasmonic acid mediated signaling pathway2.64E-02
168GO:0035428: hexose transmembrane transport2.64E-02
169GO:0006730: one-carbon metabolic process2.64E-02
170GO:0007005: mitochondrion organization2.64E-02
171GO:0031348: negative regulation of defense response2.64E-02
172GO:0005975: carbohydrate metabolic process2.70E-02
173GO:0006012: galactose metabolic process2.81E-02
174GO:0009831: plant-type cell wall modification involved in multidimensional cell growth2.81E-02
175GO:0009306: protein secretion2.99E-02
176GO:0016117: carotenoid biosynthetic process3.16E-02
177GO:0051028: mRNA transport3.16E-02
178GO:0009789: positive regulation of abscisic acid-activated signaling pathway3.16E-02
179GO:0006606: protein import into nucleus3.34E-02
180GO:0008033: tRNA processing3.34E-02
181GO:0015979: photosynthesis3.47E-02
182GO:0046323: glucose import3.53E-02
183GO:0010197: polar nucleus fusion3.53E-02
184GO:0042752: regulation of circadian rhythm3.71E-02
185GO:0009646: response to absence of light3.71E-02
186GO:0009556: microsporogenesis3.90E-02
187GO:0009630: gravitropism4.29E-02
188GO:0016032: viral process4.29E-02
189GO:1901657: glycosyl compound metabolic process4.49E-02
190GO:0030163: protein catabolic process4.49E-02
191GO:0010090: trichome morphogenesis4.49E-02
192GO:0016042: lipid catabolic process4.60E-02
193GO:0009828: plant-type cell wall loosening4.69E-02
194GO:0071805: potassium ion transmembrane transport4.90E-02
RankGO TermAdjusted P value
1GO:0003949: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity0.00E+00
2GO:0005048: signal sequence binding0.00E+00
3GO:0004076: biotin synthase activity0.00E+00
4GO:0003937: IMP cyclohydrolase activity0.00E+00
5GO:0005227: calcium activated cation channel activity0.00E+00
6GO:0061634: alpha-D-xyloside xylohydrolase0.00E+00
7GO:0010349: L-galactose dehydrogenase activity0.00E+00
8GO:0043864: indoleacetamide hydrolase activity0.00E+00
9GO:0005363: maltose transmembrane transporter activity0.00E+00
10GO:0050236: pyridoxine:NADP 4-dehydrogenase activity0.00E+00
11GO:0004588: orotate phosphoribosyltransferase activity0.00E+00
12GO:0050515: 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase activity0.00E+00
13GO:0004590: orotidine-5'-phosphate decarboxylase activity0.00E+00
14GO:0004635: phosphoribosyl-AMP cyclohydrolase activity0.00E+00
15GO:0050613: delta14-sterol reductase activity0.00E+00
16GO:0004643: phosphoribosylaminoimidazolecarboxamide formyltransferase activity0.00E+00
17GO:0043014: alpha-tubulin binding0.00E+00
18GO:0080176: xyloglucan 1,6-alpha-xylosidase activity0.00E+00
19GO:0051721: protein phosphatase 2A binding0.00E+00
20GO:0042903: tubulin deacetylase activity0.00E+00
21GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity0.00E+00
22GO:0045435: lycopene epsilon cyclase activity0.00E+00
23GO:0015229: L-ascorbic acid transporter activity0.00E+00
24GO:0030604: 1-deoxy-D-xylulose-5-phosphate reductoisomerase activity0.00E+00
25GO:0004636: phosphoribosyl-ATP diphosphatase activity0.00E+00
26GO:0070402: NADPH binding2.51E-05
27GO:0016851: magnesium chelatase activity5.48E-05
28GO:0001053: plastid sigma factor activity9.64E-05
29GO:0016987: sigma factor activity9.64E-05
30GO:0008237: metallopeptidase activity1.03E-04
31GO:0005528: FK506 binding2.04E-04
32GO:0005525: GTP binding2.48E-04
33GO:0004176: ATP-dependent peptidase activity2.67E-04
34GO:0003723: RNA binding3.37E-04
35GO:0016784: 3-mercaptopyruvate sulfurtransferase activity4.02E-04
36GO:0042286: glutamate-1-semialdehyde 2,1-aminomutase activity4.02E-04
37GO:0046480: galactolipid galactosyltransferase activity4.02E-04
38GO:0004733: pyridoxamine-phosphate oxidase activity4.02E-04
39GO:0003864: 3-methyl-2-oxobutanoate hydroxymethyltransferase activity4.02E-04
40GO:0004856: xylulokinase activity4.02E-04
41GO:0004813: alanine-tRNA ligase activity4.02E-04
42GO:0004853: uroporphyrinogen decarboxylase activity4.02E-04
43GO:0046481: digalactosyldiacylglycerol synthase activity4.02E-04
44GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity4.02E-04
45GO:0052856: NADHX epimerase activity4.02E-04
46GO:0052857: NADPHX epimerase activity4.02E-04
47GO:0004033: aldo-keto reductase (NADP) activity4.66E-04
48GO:0003755: peptidyl-prolyl cis-trans isomerase activity5.78E-04
49GO:0004326: tetrahydrofolylpolyglutamate synthase activity8.71E-04
50GO:0009977: proton motive force dependent protein transmembrane transporter activity8.71E-04
51GO:0004817: cysteine-tRNA ligase activity8.71E-04
52GO:0047158: sinapoylglucose-sinapoylglucose O-sinapoyltransferase activity8.71E-04
53GO:0004829: threonine-tRNA ligase activity8.71E-04
54GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase8.71E-04
55GO:0004826: phenylalanine-tRNA ligase activity8.71E-04
56GO:0044183: protein binding involved in protein folding1.08E-03
57GO:0000049: tRNA binding1.23E-03
58GO:0051082: unfolded protein binding1.23E-03
59GO:0031072: heat shock protein binding1.40E-03
60GO:0015462: ATPase-coupled protein transmembrane transporter activity1.41E-03
61GO:0046524: sucrose-phosphate synthase activity1.41E-03
62GO:0003913: DNA photolyase activity1.41E-03
63GO:0004222: metalloendopeptidase activity1.70E-03
64GO:0016614: oxidoreductase activity, acting on CH-OH group of donors1.80E-03
65GO:0019201: nucleotide kinase activity2.04E-03
66GO:0035250: UDP-galactosyltransferase activity2.04E-03
67GO:0048487: beta-tubulin binding2.04E-03
68GO:0004792: thiosulfate sulfurtransferase activity2.04E-03
69GO:0016149: translation release factor activity, codon specific2.04E-03
70GO:0016656: monodehydroascorbate reductase (NADH) activity2.04E-03
71GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor2.04E-03
72GO:0043023: ribosomal large subunit binding2.04E-03
73GO:0004045: aminoacyl-tRNA hydrolase activity2.74E-03
74GO:0016810: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds2.74E-03
75GO:0009044: xylan 1,4-beta-xylosidase activity2.74E-03
76GO:0046556: alpha-L-arabinofuranosidase activity2.74E-03
77GO:0004659: prenyltransferase activity2.74E-03
78GO:0016279: protein-lysine N-methyltransferase activity2.74E-03
79GO:0045300: acyl-[acyl-carrier-protein] desaturase activity3.51E-03
80GO:0016773: phosphotransferase activity, alcohol group as acceptor3.51E-03
81GO:0004040: amidase activity3.51E-03
82GO:0003924: GTPase activity3.75E-03
83GO:0004526: ribonuclease P activity4.35E-03
84GO:0004629: phospholipase C activity4.35E-03
85GO:0042578: phosphoric ester hydrolase activity4.35E-03
86GO:0004017: adenylate kinase activity5.24E-03
87GO:0016832: aldehyde-lyase activity5.24E-03
88GO:0004144: diacylglycerol O-acyltransferase activity5.24E-03
89GO:0004435: phosphatidylinositol phospholipase C activity5.24E-03
90GO:0030060: L-malate dehydrogenase activity5.24E-03
91GO:0005261: cation channel activity5.24E-03
92GO:0004723: calcium-dependent protein serine/threonine phosphatase activity5.24E-03
93GO:0009881: photoreceptor activity6.19E-03
94GO:0050660: flavin adenine dinucleotide binding6.89E-03
95GO:0005337: nucleoside transmembrane transporter activity7.20E-03
96GO:0008312: 7S RNA binding7.20E-03
97GO:0043022: ribosome binding7.20E-03
98GO:0016597: amino acid binding7.34E-03
99GO:0032041: NAD-dependent histone deacetylase activity (H3-K14 specific)8.26E-03
100GO:0003747: translation release factor activity9.38E-03
101GO:0008236: serine-type peptidase activity9.66E-03
102GO:0016844: strictosidine synthase activity1.06E-02
103GO:0005096: GTPase activator activity1.07E-02
104GO:0004805: trehalose-phosphatase activity1.18E-02
105GO:0008559: xenobiotic-transporting ATPase activity1.30E-02
106GO:0015095: magnesium ion transmembrane transporter activity1.57E-02
107GO:0009982: pseudouridine synthase activity1.57E-02
108GO:0004519: endonuclease activity1.57E-02
109GO:0005315: inorganic phosphate transmembrane transporter activity1.57E-02
110GO:0004185: serine-type carboxypeptidase activity1.67E-02
111GO:0008266: poly(U) RNA binding1.71E-02
112GO:0051537: 2 iron, 2 sulfur cluster binding1.81E-02
113GO:0102336: 3-oxo-arachidoyl-CoA synthase activity2.01E-02
114GO:0102337: 3-oxo-cerotoyl-CoA synthase activity2.01E-02
115GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity2.01E-02
116GO:0051536: iron-sulfur cluster binding2.16E-02
117GO:0004407: histone deacetylase activity2.16E-02
118GO:0003714: transcription corepressor activity2.16E-02
119GO:0003899: DNA-directed 5'-3' RNA polymerase activity2.25E-02
120GO:0016788: hydrolase activity, acting on ester bonds2.31E-02
121GO:0015079: potassium ion transmembrane transporter activity2.32E-02
122GO:0016887: ATPase activity2.66E-02
123GO:0022891: substrate-specific transmembrane transporter activity2.81E-02
124GO:0030570: pectate lyase activity2.81E-02
125GO:0008514: organic anion transmembrane transporter activity2.99E-02
126GO:0003756: protein disulfide isomerase activity2.99E-02
127GO:0008536: Ran GTPase binding3.53E-02
128GO:0016853: isomerase activity3.71E-02
129GO:0005355: glucose transmembrane transporter activity3.71E-02
130GO:0010181: FMN binding3.71E-02
131GO:0016791: phosphatase activity4.69E-02
132GO:0015144: carbohydrate transmembrane transporter activity4.78E-02
133GO:0008483: transaminase activity4.90E-02
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Gene type



Gene DE type