Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT4G25910

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0010335: response to non-ionic osmotic stress0.00E+00
2GO:0052889: 9,9'-di-cis-zeta-carotene desaturation to 7,9,7',9'-tetra-cis-lycopene0.00E+00
3GO:0042821: pyridoxal biosynthetic process0.00E+00
4GO:0005996: monosaccharide metabolic process0.00E+00
5GO:0080114: positive regulation of glycine hydroxymethyltransferase activity0.00E+00
6GO:0090393: sepal giant cell development0.00E+00
7GO:0042820: vitamin B6 catabolic process0.00E+00
8GO:0090042: tubulin deacetylation0.00E+00
9GO:0019265: glycine biosynthetic process, by transamination of glyoxylate0.00E+00
10GO:0046471: phosphatidylglycerol metabolic process0.00E+00
11GO:0006982: response to lipid hydroperoxide0.00E+00
12GO:0019464: glycine decarboxylation via glycine cleavage system7.82E-13
13GO:0009853: photorespiration2.74E-07
14GO:0006546: glycine catabolic process3.07E-07
15GO:0009902: chloroplast relocation3.07E-07
16GO:0010275: NAD(P)H dehydrogenase complex assembly3.24E-06
17GO:0006810: transport9.67E-06
18GO:0031022: nuclear migration along microfilament1.17E-05
19GO:0042823: pyridoxal phosphate biosynthetic process2.63E-05
20GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly2.63E-05
21GO:0009773: photosynthetic electron transport in photosystem I2.65E-05
22GO:0055114: oxidation-reduction process4.02E-05
23GO:0005986: sucrose biosynthetic process4.13E-05
24GO:0006094: gluconeogenesis4.13E-05
25GO:0009767: photosynthetic electron transport chain4.13E-05
26GO:0019253: reductive pentose-phosphate cycle5.02E-05
27GO:0009903: chloroplast avoidance movement1.51E-04
28GO:0009854: oxidative photosynthetic carbon pathway1.51E-04
29GO:0010196: nonphotochemical quenching1.99E-04
30GO:0009704: de-etiolation2.52E-04
31GO:0010362: negative regulation of anion channel activity by blue light2.65E-04
32GO:0051180: vitamin transport2.65E-04
33GO:0009443: pyridoxal 5'-phosphate salvage2.65E-04
34GO:1902265: abscisic acid homeostasis2.65E-04
35GO:0030974: thiamine pyrophosphate transport2.65E-04
36GO:0051775: response to redox state2.65E-04
37GO:0071277: cellular response to calcium ion2.65E-04
38GO:0006723: cuticle hydrocarbon biosynthetic process2.65E-04
39GO:0006659: phosphatidylserine biosynthetic process2.65E-04
40GO:0080093: regulation of photorespiration2.65E-04
41GO:0031998: regulation of fatty acid beta-oxidation2.65E-04
42GO:0046686: response to cadmium ion2.68E-04
43GO:0071482: cellular response to light stimulus3.10E-04
44GO:0009657: plastid organization3.10E-04
45GO:0006098: pentose-phosphate shunt3.74E-04
46GO:0009658: chloroplast organization4.34E-04
47GO:0042819: vitamin B6 biosynthetic process5.83E-04
48GO:1902326: positive regulation of chlorophyll biosynthetic process5.83E-04
49GO:0015893: drug transport5.83E-04
50GO:0034755: iron ion transmembrane transport5.83E-04
51GO:0097054: L-glutamate biosynthetic process5.83E-04
52GO:1904143: positive regulation of carotenoid biosynthetic process5.83E-04
53GO:0030388: fructose 1,6-bisphosphate metabolic process5.83E-04
54GO:0018119: peptidyl-cysteine S-nitrosylation5.99E-04
55GO:0009735: response to cytokinin7.53E-04
56GO:0006108: malate metabolic process7.76E-04
57GO:0015979: photosynthesis8.06E-04
58GO:0010207: photosystem II assembly8.73E-04
59GO:0009416: response to light stimulus8.99E-04
60GO:0000913: preprophase band assembly9.47E-04
61GO:0006000: fructose metabolic process9.47E-04
62GO:0043447: alkane biosynthetic process9.47E-04
63GO:0005977: glycogen metabolic process9.47E-04
64GO:0006011: UDP-glucose metabolic process9.47E-04
65GO:0045910: negative regulation of DNA recombination9.47E-04
66GO:0042742: defense response to bacterium1.07E-03
67GO:0006107: oxaloacetate metabolic process1.35E-03
68GO:0006537: glutamate biosynthetic process1.35E-03
69GO:0008615: pyridoxine biosynthetic process1.35E-03
70GO:0010731: protein glutathionylation1.35E-03
71GO:2001141: regulation of RNA biosynthetic process1.35E-03
72GO:0032877: positive regulation of DNA endoreduplication1.35E-03
73GO:0046836: glycolipid transport1.35E-03
74GO:0006730: one-carbon metabolic process1.58E-03
75GO:0080092: regulation of pollen tube growth1.58E-03
76GO:0045727: positive regulation of translation1.81E-03
77GO:0015994: chlorophyll metabolic process1.81E-03
78GO:0006021: inositol biosynthetic process1.81E-03
79GO:0006734: NADH metabolic process1.81E-03
80GO:0019676: ammonia assimilation cycle1.81E-03
81GO:0016117: carotenoid biosynthetic process2.03E-03
82GO:0042631: cellular response to water deprivation2.19E-03
83GO:0016120: carotene biosynthetic process2.31E-03
84GO:0006544: glycine metabolic process2.31E-03
85GO:0006564: L-serine biosynthetic process2.31E-03
86GO:0009904: chloroplast accumulation movement2.31E-03
87GO:0043097: pyrimidine nucleoside salvage2.31E-03
88GO:0006097: glyoxylate cycle2.31E-03
89GO:0006461: protein complex assembly2.31E-03
90GO:0016123: xanthophyll biosynthetic process2.31E-03
91GO:0006096: glycolytic process2.32E-03
92GO:0006520: cellular amino acid metabolic process2.36E-03
93GO:0009646: response to absence of light2.53E-03
94GO:0009791: post-embryonic development2.71E-03
95GO:0006206: pyrimidine nucleobase metabolic process2.85E-03
96GO:0050665: hydrogen peroxide biosynthetic process2.85E-03
97GO:0010942: positive regulation of cell death2.85E-03
98GO:0006563: L-serine metabolic process2.85E-03
99GO:0042549: photosystem II stabilization2.85E-03
100GO:0010264: myo-inositol hexakisphosphate biosynthetic process2.85E-03
101GO:0080167: response to karrikin2.98E-03
102GO:0042026: protein refolding3.43E-03
103GO:0006458: 'de novo' protein folding3.43E-03
104GO:1901259: chloroplast rRNA processing3.43E-03
105GO:0009645: response to low light intensity stimulus4.04E-03
106GO:0008610: lipid biosynthetic process4.69E-03
107GO:0009787: regulation of abscisic acid-activated signaling pathway4.69E-03
108GO:0009850: auxin metabolic process4.69E-03
109GO:0009231: riboflavin biosynthetic process4.69E-03
110GO:0052543: callose deposition in cell wall4.69E-03
111GO:0006002: fructose 6-phosphate metabolic process5.37E-03
112GO:0032544: plastid translation5.37E-03
113GO:0018298: protein-chromophore linkage5.46E-03
114GO:0007623: circadian rhythm5.88E-03
115GO:0009821: alkaloid biosynthetic process6.09E-03
116GO:0090333: regulation of stomatal closure6.09E-03
117GO:0000373: Group II intron splicing6.09E-03
118GO:0009638: phototropism6.83E-03
119GO:0035999: tetrahydrofolate interconversion6.83E-03
120GO:0009637: response to blue light6.93E-03
121GO:0006099: tricarboxylic acid cycle7.24E-03
122GO:0006298: mismatch repair7.61E-03
123GO:0019684: photosynthesis, light reaction8.42E-03
124GO:0006879: cellular iron ion homeostasis8.42E-03
125GO:0006352: DNA-templated transcription, initiation8.42E-03
126GO:0006415: translational termination8.42E-03
127GO:0000272: polysaccharide catabolic process8.42E-03
128GO:0009744: response to sucrose8.94E-03
129GO:0030048: actin filament-based movement1.01E-02
130GO:0010628: positive regulation of gene expression1.01E-02
131GO:0006006: glucose metabolic process1.01E-02
132GO:0042343: indole glucosinolate metabolic process1.20E-02
133GO:0090351: seedling development1.20E-02
134GO:0010025: wax biosynthetic process1.29E-02
135GO:0006636: unsaturated fatty acid biosynthetic process1.29E-02
136GO:0006289: nucleotide-excision repair1.39E-02
137GO:0016575: histone deacetylation1.49E-02
138GO:0007017: microtubule-based process1.49E-02
139GO:0009768: photosynthesis, light harvesting in photosystem I1.49E-02
140GO:0061077: chaperone-mediated protein folding1.59E-02
141GO:0098542: defense response to other organism1.59E-02
142GO:0030433: ubiquitin-dependent ERAD pathway1.70E-02
143GO:0009409: response to cold1.99E-02
144GO:0042335: cuticle development2.15E-02
145GO:0010118: stomatal movement2.15E-02
146GO:0009741: response to brassinosteroid2.26E-02
147GO:0009058: biosynthetic process2.28E-02
148GO:0015986: ATP synthesis coupled proton transport2.38E-02
149GO:0007018: microtubule-based movement2.38E-02
150GO:0006814: sodium ion transport2.38E-02
151GO:0007059: chromosome segregation2.38E-02
152GO:0005975: carbohydrate metabolic process2.41E-02
153GO:0019252: starch biosynthetic process2.51E-02
154GO:0008654: phospholipid biosynthetic process2.51E-02
155GO:0002229: defense response to oomycetes2.63E-02
156GO:0007264: small GTPase mediated signal transduction2.76E-02
157GO:0016032: viral process2.76E-02
158GO:0048235: pollen sperm cell differentiation2.76E-02
159GO:0032502: developmental process2.76E-02
160GO:0030163: protein catabolic process2.88E-02
161GO:0051607: defense response to virus3.28E-02
162GO:0000910: cytokinesis3.28E-02
163GO:0001666: response to hypoxia3.42E-02
164GO:0010027: thylakoid membrane organization3.42E-02
165GO:0010029: regulation of seed germination3.56E-02
166GO:0042128: nitrate assimilation3.70E-02
167GO:0009817: defense response to fungus, incompatible interaction4.13E-02
168GO:0030244: cellulose biosynthetic process4.13E-02
169GO:0000160: phosphorelay signal transduction system4.28E-02
170GO:0009611: response to wounding4.62E-02
171GO:0016051: carbohydrate biosynthetic process4.88E-02
RankGO TermAdjusted P value
1GO:0046554: malate dehydrogenase (NADP+) activity0.00E+00
2GO:0050236: pyridoxine:NADP 4-dehydrogenase activity0.00E+00
3GO:0036361: racemase activity, acting on amino acids and derivatives0.00E+00
4GO:0051721: protein phosphatase 2A binding0.00E+00
5GO:0042903: tubulin deacetylase activity0.00E+00
6GO:0050278: sedoheptulose-bisphosphatase activity0.00E+00
7GO:0052887: 7,9,9'-tricis-neurosporene:quinone oxidoreductase activity0.00E+00
8GO:0043014: alpha-tubulin binding0.00E+00
9GO:0004760: serine-pyruvate transaminase activity0.00E+00
10GO:0008974: phosphoribulokinase activity0.00E+00
11GO:0016855: racemase and epimerase activity, acting on amino acids and derivatives0.00E+00
12GO:0052886: 9,9'-dicis-carotene:quinone oxidoreductase activity0.00E+00
13GO:0008465: glycerate dehydrogenase activity0.00E+00
14GO:0008942: nitrite reductase [NAD(P)H] activity0.00E+00
15GO:0051738: xanthophyll binding0.00E+00
16GO:0050281: serine-glyoxylate transaminase activity0.00E+00
17GO:0016719: carotene 7,8-desaturase activity0.00E+00
18GO:0052637: delta 3-trans-hexadecenoic acid phosphatidylglycerol desaturase activity0.00E+00
19GO:0004375: glycine dehydrogenase (decarboxylating) activity1.32E-10
20GO:0050307: sucrose-phosphate phosphatase activity1.17E-05
21GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor4.76E-05
22GO:0004332: fructose-bisphosphate aldolase activity1.10E-04
23GO:0016615: malate dehydrogenase activity1.10E-04
24GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity1.51E-04
25GO:0030060: L-malate dehydrogenase activity1.51E-04
26GO:0004033: aldo-keto reductase (NADP) activity2.52E-04
27GO:0090422: thiamine pyrophosphate transporter activity2.65E-04
28GO:0009496: plastoquinol--plastocyanin reductase activity2.65E-04
29GO:0052638: indole-3-butyrate beta-glucosyltransferase activity2.65E-04
30GO:0046028: electron transporter, transferring electrons from cytochrome b6/f complex of photosystem II activity2.65E-04
31GO:0008746: NAD(P)+ transhydrogenase activity2.65E-04
32GO:0016041: glutamate synthase (ferredoxin) activity2.65E-04
33GO:0048038: quinone binding3.07E-04
34GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity5.83E-04
35GO:0004512: inositol-3-phosphate synthase activity5.83E-04
36GO:0036381: pyridoxal 5'-phosphate synthase (glutamine hydrolysing) activity5.83E-04
37GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity5.83E-04
38GO:0008967: phosphoglycolate phosphatase activity5.83E-04
39GO:0010291: carotene beta-ring hydroxylase activity5.83E-04
40GO:0010297: heteropolysaccharide binding5.83E-04
41GO:0004326: tetrahydrofolylpolyglutamate synthase activity5.83E-04
42GO:0004617: phosphoglycerate dehydrogenase activity5.83E-04
43GO:0008686: 3,4-dihydroxy-2-butanone-4-phosphate synthase activity5.83E-04
44GO:0005089: Rho guanyl-nucleotide exchange factor activity5.99E-04
45GO:0008266: poly(U) RNA binding8.73E-04
46GO:0045158: electron transporter, transferring electrons within cytochrome b6/f complex of photosystem II activity9.47E-04
47GO:0004148: dihydrolipoyl dehydrogenase activity9.47E-04
48GO:0003935: GTP cyclohydrolase II activity9.47E-04
49GO:0003983: UTP:glucose-1-phosphate uridylyltransferase activity9.47E-04
50GO:0070402: NADPH binding9.47E-04
51GO:0017089: glycolipid transporter activity1.35E-03
52GO:0052854: medium-chain-(S)-2-hydroxy-acid oxidase activity1.35E-03
53GO:0048487: beta-tubulin binding1.35E-03
54GO:0016149: translation release factor activity, codon specific1.35E-03
55GO:0052852: very-long-chain-(S)-2-hydroxy-acid oxidase activity1.35E-03
56GO:0009882: blue light photoreceptor activity1.35E-03
57GO:0004365: glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity1.35E-03
58GO:0008508: bile acid:sodium symporter activity1.35E-03
59GO:0052853: long-chain-(S)-2-hydroxy-long-chain-acid oxidase activity1.35E-03
60GO:0051287: NAD binding1.63E-03
61GO:0008453: alanine-glyoxylate transaminase activity1.81E-03
62GO:0016987: sigma factor activity1.81E-03
63GO:0008891: glycolate oxidase activity1.81E-03
64GO:0001053: plastid sigma factor activity1.81E-03
65GO:0051861: glycolipid binding1.81E-03
66GO:0016787: hydrolase activity1.92E-03
67GO:0016491: oxidoreductase activity1.95E-03
68GO:0004372: glycine hydroxymethyltransferase activity2.31E-03
69GO:0051538: 3 iron, 4 sulfur cluster binding2.31E-03
70GO:0010181: FMN binding2.53E-03
71GO:0000210: NAD+ diphosphatase activity2.85E-03
72GO:0042578: phosphoric ester hydrolase activity2.85E-03
73GO:0030983: mismatched DNA binding2.85E-03
74GO:0004849: uridine kinase activity3.43E-03
75GO:0004723: calcium-dependent protein serine/threonine phosphatase activity3.43E-03
76GO:0019843: rRNA binding3.90E-03
77GO:0016168: chlorophyll binding4.43E-03
78GO:0043022: ribosome binding4.69E-03
79GO:0032041: NAD-dependent histone deacetylase activity (H3-K14 specific)5.37E-03
80GO:0015078: hydrogen ion transmembrane transporter activity5.37E-03
81GO:0008135: translation factor activity, RNA binding5.37E-03
82GO:0003747: translation release factor activity6.09E-03
83GO:0005381: iron ion transmembrane transporter activity6.83E-03
84GO:0047617: acyl-CoA hydrolase activity6.83E-03
85GO:0016844: strictosidine synthase activity6.83E-03
86GO:0005525: GTP binding8.25E-03
87GO:0015386: potassium:proton antiporter activity8.42E-03
88GO:0004860: protein kinase inhibitor activity8.42E-03
89GO:0044183: protein binding involved in protein folding8.42E-03
90GO:0051537: 2 iron, 2 sulfur cluster binding9.68E-03
91GO:0004089: carbonate dehydratase activity1.01E-02
92GO:0031072: heat shock protein binding1.01E-02
93GO:0000155: phosphorelay sensor kinase activity1.01E-02
94GO:0031409: pigment binding1.29E-02
95GO:0003777: microtubule motor activity1.34E-02
96GO:0004407: histone deacetylase activity1.39E-02
97GO:0005528: FK506 binding1.39E-02
98GO:0003824: catalytic activity1.39E-02
99GO:0043424: protein histidine kinase binding1.49E-02
100GO:0015079: potassium ion transmembrane transporter activity1.49E-02
101GO:0004176: ATP-dependent peptidase activity1.59E-02
102GO:0051082: unfolded protein binding1.72E-02
103GO:0022891: substrate-specific transmembrane transporter activity1.81E-02
104GO:0003756: protein disulfide isomerase activity1.92E-02
105GO:0008080: N-acetyltransferase activity2.26E-02
106GO:0050662: coenzyme binding2.38E-02
107GO:0004518: nuclease activity2.76E-02
108GO:0003684: damaged DNA binding3.02E-02
109GO:0005509: calcium ion binding3.26E-02
110GO:0016597: amino acid binding3.28E-02
111GO:0009931: calcium-dependent protein serine/threonine kinase activity3.70E-02
112GO:0004683: calmodulin-dependent protein kinase activity3.84E-02
113GO:0005215: transporter activity4.23E-02
114GO:0015238: drug transmembrane transporter activity4.28E-02
115GO:0004222: metalloendopeptidase activity4.43E-02
116GO:0008168: methyltransferase activity4.43E-02
117GO:0046982: protein heterodimerization activity4.51E-02
118GO:0000287: magnesium ion binding4.51E-02
119GO:0050897: cobalt ion binding4.58E-02
120GO:0016788: hydrolase activity, acting on ester bonds4.68E-02
121GO:0003746: translation elongation factor activity4.88E-02
RankGO TermAdjusted P value
1GO:0009575: chromoplast stroma0.00E+00
2GO:0009344: nitrite reductase complex [NAD(P)H]0.00E+00
3GO:0042579: microbody0.00E+00
4GO:0009571: proplastid stroma0.00E+00
5GO:0009507: chloroplast5.04E-50
6GO:0009535: chloroplast thylakoid membrane2.44E-24
7GO:0009941: chloroplast envelope4.87E-21
8GO:0009570: chloroplast stroma4.87E-18
9GO:0009534: chloroplast thylakoid1.12E-15
10GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)7.36E-12
11GO:0009579: thylakoid6.87E-11
12GO:0005960: glycine cleavage complex1.32E-10
13GO:0048046: apoplast2.00E-08
14GO:0009543: chloroplast thylakoid lumen5.39E-07
15GO:0030095: chloroplast photosystem II1.24E-06
16GO:0010319: stromule3.24E-05
17GO:0010287: plastoglobule8.64E-05
18GO:0009654: photosystem II oxygen evolving complex9.78E-05
19GO:0031969: chloroplast membrane1.14E-04
20GO:0009782: photosystem I antenna complex2.65E-04
21GO:0009523: photosystem II2.80E-04
22GO:0019898: extrinsic component of membrane2.80E-04
23GO:0016020: membrane4.01E-04
24GO:0000427: plastid-encoded plastid RNA polymerase complex5.83E-04
25GO:0009509: chromoplast9.47E-04
26GO:0005759: mitochondrial matrix9.61E-04
27GO:0005777: peroxisome1.18E-03
28GO:0009517: PSII associated light-harvesting complex II1.81E-03
29GO:0030286: dynein complex1.81E-03
30GO:0009512: cytochrome b6f complex2.31E-03
31GO:0045263: proton-transporting ATP synthase complex, coupling factor F(o)2.85E-03
32GO:0009840: chloroplastic endopeptidase Clp complex3.43E-03
33GO:0009533: chloroplast stromal thylakoid4.04E-03
34GO:0005623: cell4.04E-03
35GO:0009707: chloroplast outer membrane5.46E-03
36GO:0005819: spindle7.57E-03
37GO:0016324: apical plasma membrane7.61E-03
38GO:0031977: thylakoid lumen8.24E-03
39GO:0005765: lysosomal membrane8.42E-03
40GO:0009508: plastid chromosome1.01E-02
41GO:0019013: viral nucleocapsid1.01E-02
42GO:0030076: light-harvesting complex1.20E-02
43GO:0005875: microtubule associated complex1.29E-02
44GO:0005871: kinesin complex2.03E-02
45GO:0009504: cell plate2.51E-02
46GO:0005694: chromosome2.76E-02
47GO:0009295: nucleoid3.15E-02
48GO:0030529: intracellular ribonucleoprotein complex3.42E-02
49GO:0005829: cytosol4.78E-02
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Gene type



Gene DE type