gene detail

Gene description

TAIR ID: AT4G25420

Short description: 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein

Pathogen responsiveness: -0.80

General responsiveness: -0.99

Orthologous

Rice:

OS03G0856700

Maize: No orthologous gene

Wheat:

TA.141.1.S1_AT TA.141.1.S1_X_AT

GO biological process

leaf development, unidimensional cell growth, gibberellin biosynthetic process, short-day photoperiodism, flowering, oxidation-reduction process, response to gibberellin, flower development, gibberellic acid mediated signaling pathway

GO cellular component

cytoplasm

GO molecular function

oxidoreductase activity, gibberellin 20-oxidase activity, metal ion binding

Protein domain

Pfam	PF14226, non-haem dioxygenase in morphine synthesis N-terminal
Pfam	PF03171, 2OG-Fe(II) oxygenase superfamily

Metabolic pathway

PWY-5070: gibberellin biosynthesis I (non C-3, non C-13 hydroxylation)
PWY-5035: gibberellin biosynthesis III (early C-13 hydroxylation)
PWY-5036: gibberellin biosynthesis II (early C-3 hydroxylation)

KEGG pathway

PATH:ath00904: Diterpenoid biosynthesis

Transcriptional regulation

Regulator:
AT1G14920, AT1G62360, AT4G36920, AT1G24260, AT3G61890, AT2G01570, AT5G61850, AT4G08150

Target:
none

Protein-protein interaction network

No Interactor

Coexpression network

GSE45212_WT_PSTDC3000_AVRRPT2  view
GSE13739_WT_GO  view
GSE13739_EDS16_GO  view
GSE45212_MED14_PSTDC3000_AVRRPT2  view
GSE26679_EDR1_GC  view

Differentially expressed condition

13 conditions

Series	Control	Treatment	Log₂FC	Adj. P value
GSE17500	Col, WT, control 0 h	Col, WT, PstDC3000 24 h	-1.62	2.23E-06
GSE17500	Col, miR393, control 0 h	Col, miR393, PstDC3000 24 h	-1.53	7.51E-06
GSE26679	Col, WT, GC 0 h	Col, WT, GC 18 h	-2.42	1.05E-07
GSE26679	Col, WT, GC 0 h	Col, WT, GC 36 h	-2.82	6.49E-09
GSE26679	Col, edr1, GC 0 h	Col, edr1, GC 18 h	-2.03	1.42E-06
GSE26679	Col, edr1, GC 0 h	Col, edr1, GC 36 h	-2.17	3.37E-07
GSE37269	Ler0, WT, control	Ler0, WT, TEV 21 d	-3.45	2.30E-06
GSE40544	Col, WT, control	Col, WT, PstDC3000 AvrRpt2	-1.54	4.88E-03
GSE40544	Col, WT, control	Col, WT, PstDC3000 EV	-1.90	8.81E-04
GSE40544	Col, Sid2, control	Col, Sid2, PstDC3000 AvrRpt2	-1.51	5.99E-03
GSE40544	Col, Sid2, control	Col, Sid2, PstDC3000 EV	-1.82	3.18E-03
GSE45214	Col, med16, PstDC3000 AvrRpt2 0 h	Col, med16, PstDC3000 AvrRpt2 4 h	-1.99	2.24E-05
GSE50526	Col, WT, mock 24 h	Col, WT, A. brassicicola 24 h	-1.98	1.03E-04