co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G25420

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0045014: negative regulation of transcription by glucose	0.00E+00
2	GO:0061062: regulation of nematode larval development	1.29E-06
3	GO:0009733: response to auxin	5.48E-05
4	GO:0006351: transcription, DNA-templated	1.32E-04
5	GO:0032958: inositol phosphate biosynthetic process	1.62E-04
6	GO:0045786: negative regulation of cell cycle	1.62E-04
7	GO:0010726: positive regulation of hydrogen peroxide metabolic process	1.62E-04
8	GO:0006863: purine nucleobase transport	5.56E-04
9	GO:0090506: axillary shoot meristem initiation	6.04E-04
10	GO:0010321: regulation of vegetative phase change	8.63E-04
11	GO:0006020: inositol metabolic process	8.63E-04
12	GO:0009686: gibberellin biosynthetic process	8.83E-04
13	GO:0042991: transcription factor import into nucleus	1.14E-03
14	GO:0045892: negative regulation of transcription, DNA-templated	1.38E-03
15	GO:0045487: gibberellin catabolic process	1.45E-03
16	GO:0009567: double fertilization forming a zygote and endosperm	1.77E-03
17	GO:0010942: positive regulation of cell death	1.78E-03
18	GO:0042549: photosystem II stabilization	1.78E-03
19	GO:0045736: negative regulation of cyclin-dependent protein serine/threonine kinase activity	1.78E-03
20	GO:0048364: root development	1.98E-03
21	GO:0009861: jasmonic acid and ethylene-dependent systemic resistance	2.14E-03
22	GO:0048573: photoperiodism, flowering	2.47E-03
23	GO:0007050: cell cycle arrest	2.52E-03
24	GO:0006402: mRNA catabolic process	2.91E-03
25	GO:0009704: de-etiolation	2.91E-03
26	GO:0042255: ribosome assembly	2.91E-03
27	GO:0006353: DNA-templated transcription, termination	2.91E-03
28	GO:0048589: developmental growth	3.77E-03
29	GO:0006355: regulation of transcription, DNA-templated	3.79E-03
30	GO:0042546: cell wall biogenesis	4.63E-03
31	GO:0009870: defense response signaling pathway, resistance gene-dependent	4.69E-03
32	GO:0009641: shade avoidance	4.69E-03
33	GO:0048366: leaf development	5.18E-03
34	GO:0008285: negative regulation of cell proliferation	5.19E-03
35	GO:0010152: pollen maturation	5.69E-03
36	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	5.78E-03
37	GO:0010628: positive regulation of gene expression	6.22E-03
38	GO:2000028: regulation of photoperiodism, flowering	6.22E-03
39	GO:0010102: lateral root morphogenesis	6.22E-03
40	GO:0010207: photosystem II assembly	6.76E-03
41	GO:0010223: secondary shoot formation	6.76E-03
42	GO:0009887: animal organ morphogenesis	6.76E-03
43	GO:0006302: double-strand break repair	6.76E-03
44	GO:0048768: root hair cell tip growth	6.76E-03
45	GO:0009969: xyloglucan biosynthetic process	7.32E-03
46	GO:0009624: response to nematode	8.52E-03
47	GO:0051321: meiotic cell cycle	9.72E-03
48	GO:0016114: terpenoid biosynthetic process	9.72E-03
49	GO:0001944: vasculature development	1.10E-02
50	GO:0048443: stamen development	1.17E-02
51	GO:0045492: xylan biosynthetic process	1.17E-02
52	GO:0000271: polysaccharide biosynthetic process	1.31E-02
53	GO:0045489: pectin biosynthetic process	1.38E-02
54	GO:0009734: auxin-activated signaling pathway	1.40E-02
55	GO:0048825: cotyledon development	1.52E-02
56	GO:0071554: cell wall organization or biogenesis	1.60E-02
57	GO:0002229: defense response to oomycetes	1.60E-02
58	GO:0010583: response to cyclopentenone	1.67E-02
59	GO:0032502: developmental process	1.67E-02
60	GO:0006470: protein dephosphorylation	1.69E-02
61	GO:0010090: trichome morphogenesis	1.75E-02
62	GO:0019760: glucosinolate metabolic process	1.83E-02
63	GO:0051301: cell division	2.10E-02
64	GO:0010411: xyloglucan metabolic process	2.33E-02
65	GO:0009817: defense response to fungus, incompatible interaction	2.51E-02
66	GO:0009723: response to ethylene	2.65E-02
67	GO:0006811: ion transport	2.69E-02
68	GO:0016051: carbohydrate biosynthetic process	2.97E-02
69	GO:0006839: mitochondrial transport	3.26E-02
70	GO:0007165: signal transduction	3.83E-02
71	GO:0009664: plant-type cell wall organization	4.18E-02
72	GO:0009736: cytokinin-activated signaling pathway	4.39E-02
73	GO:0006417: regulation of translation	4.72E-02
74	GO:0016310: phosphorylation	4.84E-02

Rank	GO Term	Adjusted P value
1	GO:0009899: ent-kaurene synthase activity	0.00E+00
2	GO:0033857: diphosphoinositol-pentakisphosphate kinase activity	1.62E-04
3	GO:0000829: inositol heptakisphosphate kinase activity	1.62E-04
4	GO:0000828: inositol hexakisphosphate kinase activity	1.62E-04
5	GO:0045543: gibberellin 2-beta-dioxygenase activity	3.69E-04
6	GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity	3.69E-04
7	GO:0005345: purine nucleobase transmembrane transporter activity	6.78E-04
8	GO:0052634: C-19 gibberellin 2-beta-dioxygenase activity	8.63E-04
9	GO:0043565: sequence-specific DNA binding	9.61E-04
10	GO:0010011: auxin binding	1.14E-03
11	GO:0030332: cyclin binding	1.78E-03
12	GO:0004861: cyclin-dependent protein serine/threonine kinase inhibitor activity	1.78E-03
13	GO:0003700: transcription factor activity, sequence-specific DNA binding	3.00E-03
14	GO:0008378: galactosyltransferase activity	5.69E-03
15	GO:0003712: transcription cofactor activity	7.32E-03
16	GO:0004722: protein serine/threonine phosphatase activity	7.82E-03
17	GO:0033612: receptor serine/threonine kinase binding	9.72E-03
18	GO:0008408: 3'-5' exonuclease activity	9.72E-03
19	GO:0010333: terpene synthase activity	9.72E-03
20	GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity	1.04E-02
21	GO:0003727: single-stranded RNA binding	1.17E-02
22	GO:0000977: RNA polymerase II regulatory region sequence-specific DNA binding	1.22E-02
23	GO:0016853: isomerase activity	1.45E-02
24	GO:0016762: xyloglucan:xyloglucosyl transferase activity	1.60E-02
25	GO:0016413: O-acetyltransferase activity	1.99E-02
26	GO:0000287: magnesium ion binding	2.25E-02
27	GO:0016798: hydrolase activity, acting on glycosyl bonds	2.33E-02
28	GO:0005096: GTPase activator activity	2.60E-02
29	GO:0030145: manganese ion binding	2.78E-02
30	GO:0009055: electron carrier activity	4.48E-02
31	GO:0003690: double-stranded DNA binding	4.50E-02
32	GO:0016298: lipase activity	4.50E-02
33	GO:0044212: transcription regulatory region DNA binding	4.52E-02
34	GO:0004519: endonuclease activity	4.54E-02
35	GO:0003777: microtubule motor activity	4.72E-02

Rank	GO Term	Adjusted P value
1	GO:0043224: nuclear SCF ubiquitin ligase complex	0.00E+00
2	GO:0000791: euchromatin	1.62E-04
3	GO:0030870: Mre11 complex	3.69E-04
4	GO:0009531: secondary cell wall	8.63E-04
5	GO:0000795: synaptonemal complex	1.45E-03
6	GO:0009508: plastid chromosome	6.22E-03
7	GO:0005875: microtubule associated complex	7.90E-03
8	GO:0009654: photosystem II oxygen evolving complex	9.09E-03
9	GO:0009532: plastid stroma	9.72E-03
10	GO:0019898: extrinsic component of membrane	1.52E-02
11	GO:0009504: cell plate	1.52E-02
12	GO:0016592: mediator complex	1.67E-02
13	GO:0000785: chromatin	1.67E-02
14	GO:0009295: nucleoid	1.91E-02
15	GO:0030529: intracellular ribonucleoprotein complex	2.07E-02