gene detail

Gene description

TAIR ID: AT4G24770

Short description: 31-kDa RNA binding protein

Pathogen responsiveness: -0.28

General responsiveness: 1.67

Orthologous

Rice:

OS09G0565200

Maize:

GRMZM2G011129

Wheat:

TA.9520.1.S1_AT

GO biological process

RNA processing, RNA stabilization, cold acclimation, RNA modification, mRNA processing, base conversion or substitution editing, response to cold, innate immune response

GO cellular component

chloroplast stroma, chloroplast envelope, chloroplast, chloroplast thylakoid membrane, intracellular ribonucleoprotein complex, thylakoid

GO molecular function

unkown

Protein domain

Pfam	PF00076, RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
SMART	SM00360, RRM

Metabolic pathway

Not involved in metabolic pathway

KEGG pathway

Not involved in KEGG pathway

Transcriptional regulation

Regulator:
AT1G51600

Target:
none

Protein-protein interaction network

The number of partners (degree) is: 2

click to view PPI network

Coexpression network

GSE45212_WT_PSTDC3000_AVRRPT2  view
GSE26679_WT_GC  view
GSE56094_WT_HRPA-  view
GSE13739_WT_GO  view
GSE13739_EDS16_GO  view
GSE5686_WT_GO  view
GSE56094_WT_PSTDC3000  view
GSE45212_MED14_PSTDC3000_AVRRPT2  view

Differentially expressed condition

17 conditions

Series	Control	Treatment	Log₂FC	Adj. P value
GSE17500	Col, WT, control 0 h	Col, WT, PstDC3000 24 h	-1.51	2.01E-05
GSE18978	Col, WT, control 24 h	Col, WT, PsmES4326 24 h	-4.30	3.73E-10
GSE37269	Ei2, WT, control	Ei2, WT, TEV 21 d	-1.94	8.91E-03
GSE45212	Col, WT, PstDC3000 AvrRpt2 0 h	Col, WT, PstDC3000 AvrRpt2 12 h	-1.98	9.90E-09
GSE45212	Col, med14, PstDC3000 AvrRpt2 0 h	Col, med14, PstDC3000 AvrRpt2 12 h	-2.23	1.90E-09
GSE45212	Col, med14, PstDC3000 AvrRpt2 0 h	Col, med14, PstDC3000 AvrRpt2 8 h	-1.74	6.03E-08
GSE5520	Col, WT, control 10 h	Col, WT, Cor- 10 h	-1.76	1.27E-04
GSE56094	Col, WT, control 10 h	Col, WT, PstDC3000 10 h	-1.80	2.38E-08
GSE56094	Col, WT, control 10 h	Col, WT, hrpA- 10 h	-1.83	1.16E-07
GSE56094	Col, WT, control 11 h	Col, WT, PstDC3000 11 h	-1.74	8.50E-08
GSE56094	Col, WT, control 11 h	Col, WT, hrpA- 11 h	-1.98	1.01E-08
GSE56094	Col, WT, control 12 h	Col, WT, PstDC3000 12 h	-1.86	1.27E-08
GSE56094	Col, WT, control 12 h	Col, WT, hrpA- 12 h	-1.64	5.71E-06
GSE56094	Col, WT, control 13 h	Col, WT, PstDC3000 13 h	-2.27	1.21E-11
GSE56094	Col, WT, control 8 h	Col, WT, hrpA- 8 h	-1.58	2.95E-06
GSE56094	Col, WT, control 9 h	Col, WT, PstDC3000 9 h	-1.56	2.09E-06
GSE56094	Col, WT, control 9 h	Col, WT, hrpA- 9 h	-1.76	3.78E-07