Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT4G24770

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation0.00E+00
2GO:0006428: isoleucyl-tRNA aminoacylation0.00E+00
3GO:0033614: chloroplast proton-transporting ATP synthase complex assembly0.00E+00
4GO:0015717: triose phosphate transport0.00E+00
5GO:1905421: regulation of plant organ morphogenesis0.00E+00
6GO:0002184: cytoplasmic translational termination0.00E+00
7GO:0030155: regulation of cell adhesion0.00E+00
8GO:0019323: pentose catabolic process0.00E+00
9GO:0009735: response to cytokinin1.22E-17
10GO:0015979: photosynthesis6.79E-15
11GO:0032544: plastid translation4.80E-12
12GO:0006412: translation5.98E-12
13GO:0042254: ribosome biogenesis3.56E-09
14GO:0009409: response to cold2.22E-07
15GO:0019464: glycine decarboxylation via glycine cleavage system3.70E-07
16GO:0043085: positive regulation of catalytic activity6.16E-07
17GO:0010027: thylakoid membrane organization2.35E-06
18GO:0030388: fructose 1,6-bisphosphate metabolic process3.71E-06
19GO:0006000: fructose metabolic process1.33E-05
20GO:0010206: photosystem II repair1.39E-05
21GO:0042742: defense response to bacterium1.80E-05
22GO:0009773: photosynthetic electron transport in photosystem I3.13E-05
23GO:0045454: cell redox homeostasis3.35E-05
24GO:0005983: starch catabolic process3.93E-05
25GO:0006109: regulation of carbohydrate metabolic process5.37E-05
26GO:0009658: chloroplast organization8.74E-05
27GO:0009768: photosynthesis, light harvesting in photosystem I1.14E-04
28GO:0034599: cellular response to oxidative stress1.37E-04
29GO:0010196: nonphotochemical quenching2.21E-04
30GO:0009645: response to low light intensity stimulus2.21E-04
31GO:0000413: protein peptidyl-prolyl isomerization2.39E-04
32GO:0006662: glycerol ether metabolic process2.65E-04
33GO:0005978: glycogen biosynthetic process2.80E-04
34GO:0005980: glycogen catabolic process2.84E-04
35GO:0044262: cellular carbohydrate metabolic process2.84E-04
36GO:0000023: maltose metabolic process2.84E-04
37GO:0000025: maltose catabolic process2.84E-04
38GO:0019252: starch biosynthetic process3.21E-04
39GO:0006002: fructose 6-phosphate metabolic process3.44E-04
40GO:0005976: polysaccharide metabolic process6.25E-04
41GO:0010270: photosystem II oxygen evolving complex assembly6.25E-04
42GO:0015995: chlorophyll biosynthetic process6.98E-04
43GO:0009817: defense response to fungus, incompatible interaction7.94E-04
44GO:0018298: protein-chromophore linkage7.94E-04
45GO:0006094: gluconeogenesis8.57E-04
46GO:0005986: sucrose biosynthetic process8.57E-04
47GO:0010207: photosystem II assembly9.62E-04
48GO:0019253: reductive pentose-phosphate cycle9.62E-04
49GO:0010581: regulation of starch biosynthetic process1.01E-03
50GO:0006518: peptide metabolic process1.01E-03
51GO:0080055: low-affinity nitrate transport1.01E-03
52GO:0035436: triose phosphate transmembrane transport1.01E-03
53GO:2001295: malonyl-CoA biosynthetic process1.01E-03
54GO:0048281: inflorescence morphogenesis1.01E-03
55GO:0046686: response to cadmium ion1.15E-03
56GO:0010025: wax biosynthetic process1.19E-03
57GO:0006289: nucleotide-excision repair1.32E-03
58GO:0006979: response to oxidative stress1.37E-03
59GO:0006241: CTP biosynthetic process1.45E-03
60GO:0009052: pentose-phosphate shunt, non-oxidative branch1.45E-03
61GO:0010731: protein glutathionylation1.45E-03
62GO:0006424: glutamyl-tRNA aminoacylation1.45E-03
63GO:0006165: nucleoside diphosphate phosphorylation1.45E-03
64GO:0006228: UTP biosynthetic process1.45E-03
65GO:0010148: transpiration1.45E-03
66GO:0051085: chaperone mediated protein folding requiring cofactor1.45E-03
67GO:0009644: response to high light intensity1.61E-03
68GO:0055114: oxidation-reduction process1.92E-03
69GO:2000122: negative regulation of stomatal complex development1.94E-03
70GO:0010600: regulation of auxin biosynthetic process1.94E-03
71GO:0006546: glycine catabolic process1.94E-03
72GO:0015713: phosphoglycerate transport1.94E-03
73GO:0010021: amylopectin biosynthetic process1.94E-03
74GO:0010037: response to carbon dioxide1.94E-03
75GO:0006542: glutamine biosynthetic process1.94E-03
76GO:0006808: regulation of nitrogen utilization1.94E-03
77GO:0019676: ammonia assimilation cycle1.94E-03
78GO:0015976: carbon utilization1.94E-03
79GO:0010023: proanthocyanidin biosynthetic process1.94E-03
80GO:0009765: photosynthesis, light harvesting1.94E-03
81GO:0006183: GTP biosynthetic process1.94E-03
82GO:0045727: positive regulation of translation1.94E-03
83GO:0032543: mitochondrial translation2.48E-03
84GO:0006544: glycine metabolic process2.48E-03
85GO:0006461: protein complex assembly2.48E-03
86GO:0009435: NAD biosynthetic process2.48E-03
87GO:0006828: manganese ion transport3.06E-03
88GO:0009643: photosynthetic acclimation3.06E-03
89GO:0006563: L-serine metabolic process3.06E-03
90GO:0010304: PSII associated light-harvesting complex II catabolic process3.06E-03
91GO:0042549: photosystem II stabilization3.06E-03
92GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway3.06E-03
93GO:0000470: maturation of LSU-rRNA3.06E-03
94GO:0030163: protein catabolic process3.66E-03
95GO:0010244: response to low fluence blue light stimulus by blue low-fluence system3.68E-03
96GO:0042026: protein refolding3.68E-03
97GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)3.68E-03
98GO:1901259: chloroplast rRNA processing3.68E-03
99GO:0010555: response to mannitol3.68E-03
100GO:0009955: adaxial/abaxial pattern specification3.68E-03
101GO:0070370: cellular heat acclimation4.34E-03
102GO:0010103: stomatal complex morphogenesis4.34E-03
103GO:0010161: red light signaling pathway4.34E-03
104GO:0010928: regulation of auxin mediated signaling pathway5.03E-03
105GO:0030091: protein repair5.03E-03
106GO:0009642: response to light intensity5.03E-03
107GO:0009704: de-etiolation5.03E-03
108GO:0048564: photosystem I assembly5.03E-03
109GO:0001558: regulation of cell growth5.77E-03
110GO:0019430: removal of superoxide radicals5.77E-03
111GO:0009657: plastid organization5.77E-03
112GO:0006783: heme biosynthetic process6.54E-03
113GO:0010218: response to far red light6.68E-03
114GO:0007623: circadian rhythm6.71E-03
115GO:0042761: very long-chain fatty acid biosynthetic process7.35E-03
116GO:0010380: regulation of chlorophyll biosynthetic process7.35E-03
117GO:0005982: starch metabolic process7.35E-03
118GO:0010205: photoinhibition7.35E-03
119GO:0035999: tetrahydrofolate interconversion7.35E-03
120GO:0009637: response to blue light7.68E-03
121GO:0009853: photorespiration7.68E-03
122GO:0006782: protoporphyrinogen IX biosynthetic process8.19E-03
123GO:0006816: calcium ion transport9.06E-03
124GO:0072593: reactive oxygen species metabolic process9.06E-03
125GO:0006415: translational termination9.06E-03
126GO:0009750: response to fructose9.06E-03
127GO:0018119: peptidyl-cysteine S-nitrosylation9.06E-03
128GO:0016485: protein processing9.06E-03
129GO:0010114: response to red light9.92E-03
130GO:0045037: protein import into chloroplast stroma9.96E-03
131GO:0010102: lateral root morphogenesis1.09E-02
132GO:0006807: nitrogen compound metabolic process1.09E-02
133GO:0009718: anthocyanin-containing compound biosynthetic process1.09E-02
134GO:0009767: photosynthetic electron transport chain1.09E-02
135GO:0010020: chloroplast fission1.19E-02
136GO:0009266: response to temperature stimulus1.19E-02
137GO:0005985: sucrose metabolic process1.29E-02
138GO:0009585: red, far-red light phototransduction1.34E-02
139GO:0009944: polarity specification of adaxial/abaxial axis1.50E-02
140GO:0000027: ribosomal large subunit assembly1.50E-02
141GO:0019344: cysteine biosynthetic process1.50E-02
142GO:0006508: proteolysis1.52E-02
143GO:0080167: response to karrikin1.54E-02
144GO:0043086: negative regulation of catalytic activity1.59E-02
145GO:0006418: tRNA aminoacylation for protein translation1.60E-02
146GO:0007017: microtubule-based process1.60E-02
147GO:0051302: regulation of cell division1.60E-02
148GO:0016114: terpenoid biosynthetic process1.72E-02
149GO:0035428: hexose transmembrane transport1.83E-02
150GO:0007005: mitochondrion organization1.83E-02
151GO:0030245: cellulose catabolic process1.83E-02
152GO:0010017: red or far-red light signaling pathway1.83E-02
153GO:0009686: gibberellin biosynthetic process1.95E-02
154GO:0009411: response to UV1.95E-02
155GO:0001944: vasculature development1.95E-02
156GO:0006284: base-excision repair2.07E-02
157GO:0009306: protein secretion2.07E-02
158GO:0006457: protein folding2.21E-02
159GO:0042335: cuticle development2.31E-02
160GO:0046323: glucose import2.44E-02
161GO:0015986: ATP synthesis coupled proton transport2.57E-02
162GO:0042744: hydrogen peroxide catabolic process2.73E-02
163GO:0009790: embryo development2.80E-02
164GO:0000302: response to reactive oxygen species2.83E-02
165GO:0008152: metabolic process2.84E-02
166GO:0009627: systemic acquired resistance3.98E-02
167GO:0048573: photoperiodism, flowering4.13E-02
168GO:0016311: dephosphorylation4.29E-02
169GO:0048481: plant ovule development4.45E-02
170GO:0008219: cell death4.45E-02
171GO:0009813: flavonoid biosynthetic process4.60E-02
172GO:0010119: regulation of stomatal movement4.93E-02
173GO:0007568: aging4.93E-02
RankGO TermAdjusted P value
1GO:0050515: 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase activity0.00E+00
2GO:0047538: 2-carboxy-D-arabinitol-1-phosphatase activity0.00E+00
3GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity0.00E+00
4GO:0004822: isoleucine-tRNA ligase activity0.00E+00
5GO:0009899: ent-kaurene synthase activity0.00E+00
6GO:0102193: protein-ribulosamine 3-kinase activity0.00E+00
7GO:0051738: xanthophyll binding0.00E+00
8GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity0.00E+00
9GO:0019843: rRNA binding1.47E-18
10GO:0003735: structural constituent of ribosome4.38E-15
11GO:0008047: enzyme activator activity4.30E-07
12GO:0051920: peroxiredoxin activity2.83E-06
13GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity3.71E-06
14GO:0016209: antioxidant activity6.91E-06
15GO:0004791: thioredoxin-disulfide reductase activity1.79E-05
16GO:0003755: peptidyl-prolyl cis-trans isomerase activity2.39E-05
17GO:0004375: glycine dehydrogenase (decarboxylating) activity2.99E-05
18GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor3.10E-05
19GO:0008878: glucose-1-phosphate adenylyltransferase activity5.37E-05
20GO:0016168: chlorophyll binding5.54E-05
21GO:0008266: poly(U) RNA binding5.88E-05
22GO:0031409: pigment binding8.35E-05
23GO:0004222: metalloendopeptidase activity9.89E-05
24GO:0047134: protein-disulfide reductase activity2.14E-04
25GO:0004856: xylulokinase activity2.84E-04
26GO:0009496: plastoquinol--plastocyanin reductase activity2.84E-04
27GO:0004134: 4-alpha-glucanotransferase activity2.84E-04
28GO:0047066: phospholipid-hydroperoxide glutathione peroxidase activity2.84E-04
29GO:0004645: phosphorylase activity2.84E-04
30GO:0046028: electron transporter, transferring electrons from cytochrome b6/f complex of photosystem II activity2.84E-04
31GO:0019203: carbohydrate phosphatase activity2.84E-04
32GO:0004853: uroporphyrinogen decarboxylase activity2.84E-04
33GO:0008534: oxidized purine nucleobase lesion DNA N-glycosylase activity2.84E-04
34GO:0004801: sedoheptulose-7-phosphate:D-glyceraldehyde-3-phosphate glyceronetransferase activity2.84E-04
35GO:0008184: glycogen phosphorylase activity2.84E-04
36GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity2.84E-04
37GO:0018708: thiol S-methyltransferase activity6.25E-04
38GO:0008967: phosphoglycolate phosphatase activity6.25E-04
39GO:0004618: phosphoglycerate kinase activity6.25E-04
40GO:0010297: heteropolysaccharide binding6.25E-04
41GO:0033201: alpha-1,4-glucan synthase activity6.25E-04
42GO:0004750: ribulose-phosphate 3-epimerase activity6.25E-04
43GO:0004373: glycogen (starch) synthase activity1.01E-03
44GO:0045158: electron transporter, transferring electrons within cytochrome b6/f complex of photosystem II activity1.01E-03
45GO:0017150: tRNA dihydrouridine synthase activity1.01E-03
46GO:0005504: fatty acid binding1.01E-03
47GO:0002161: aminoacyl-tRNA editing activity1.01E-03
48GO:0004148: dihydrolipoyl dehydrogenase activity1.01E-03
49GO:0004075: biotin carboxylase activity1.01E-03
50GO:0045174: glutathione dehydrogenase (ascorbate) activity1.01E-03
51GO:0030267: glyoxylate reductase (NADP) activity1.01E-03
52GO:0071917: triose-phosphate transmembrane transporter activity1.01E-03
53GO:0080054: low-affinity nitrate transmembrane transporter activity1.01E-03
54GO:0004324: ferredoxin-NADP+ reductase activity1.01E-03
55GO:0004857: enzyme inhibitor activity1.32E-03
56GO:0005528: FK506 binding1.32E-03
57GO:0016149: translation release factor activity, codon specific1.45E-03
58GO:0016851: magnesium chelatase activity1.45E-03
59GO:0004550: nucleoside diphosphate kinase activity1.45E-03
60GO:0043023: ribosomal large subunit binding1.45E-03
61GO:0019201: nucleotide kinase activity1.45E-03
62GO:0016810: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds1.94E-03
63GO:0045430: chalcone isomerase activity1.94E-03
64GO:0009011: starch synthase activity1.94E-03
65GO:0019199: transmembrane receptor protein kinase activity1.94E-03
66GO:0042277: peptide binding1.94E-03
67GO:0015120: phosphoglycerate transmembrane transporter activity1.94E-03
68GO:0019104: DNA N-glycosylase activity1.94E-03
69GO:0004372: glycine hydroxymethyltransferase activity2.48E-03
70GO:0003959: NADPH dehydrogenase activity2.48E-03
71GO:0016773: phosphotransferase activity, alcohol group as acceptor2.48E-03
72GO:0004356: glutamate-ammonia ligase activity2.48E-03
73GO:0003989: acetyl-CoA carboxylase activity2.48E-03
74GO:0004601: peroxidase activity2.51E-03
75GO:0050662: coenzyme binding2.80E-03
76GO:0004130: cytochrome-c peroxidase activity3.06E-03
77GO:2001070: starch binding3.06E-03
78GO:0015035: protein disulfide oxidoreductase activity3.47E-03
79GO:0033743: peptide-methionine (R)-S-oxide reductase activity3.68E-03
80GO:0004017: adenylate kinase activity3.68E-03
81GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity3.68E-03
82GO:0004602: glutathione peroxidase activity3.68E-03
83GO:0008237: metallopeptidase activity4.14E-03
84GO:0004252: serine-type endopeptidase activity5.08E-03
85GO:0008236: serine-type peptidase activity5.76E-03
86GO:0015078: hydrogen ion transmembrane transporter activity5.77E-03
87GO:0008138: protein tyrosine/serine/threonine phosphatase activity6.54E-03
88GO:0003747: translation release factor activity6.54E-03
89GO:0005384: manganese ion transmembrane transporter activity7.35E-03
90GO:0016491: oxidoreductase activity7.62E-03
91GO:0015386: potassium:proton antiporter activity9.06E-03
92GO:0044183: protein binding involved in protein folding9.06E-03
93GO:0042626: ATPase activity, coupled to transmembrane movement of substances9.10E-03
94GO:0000049: tRNA binding9.96E-03
95GO:0004565: beta-galactosidase activity1.09E-02
96GO:0004022: alcohol dehydrogenase (NAD) activity1.09E-02
97GO:0004089: carbonate dehydratase activity1.09E-02
98GO:0015095: magnesium ion transmembrane transporter activity1.09E-02
99GO:0031072: heat shock protein binding1.09E-02
100GO:0015079: potassium ion transmembrane transporter activity1.60E-02
101GO:0004176: ATP-dependent peptidase activity1.72E-02
102GO:0051082: unfolded protein binding1.91E-02
103GO:0008810: cellulase activity1.95E-02
104GO:0022891: substrate-specific transmembrane transporter activity1.95E-02
105GO:0004812: aminoacyl-tRNA ligase activity2.19E-02
106GO:0001085: RNA polymerase II transcription factor binding2.44E-02
107GO:0005355: glucose transmembrane transporter activity2.57E-02
108GO:0046872: metal ion binding2.63E-02
109GO:0030170: pyridoxal phosphate binding2.66E-02
110GO:0048038: quinone binding2.83E-02
111GO:0003684: damaged DNA binding3.25E-02
112GO:0005200: structural constituent of cytoskeleton3.39E-02
113GO:0030247: polysaccharide binding4.13E-02
114GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity4.45E-02
115GO:0005524: ATP binding4.70E-02
116GO:0001228: transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding4.93E-02
RankGO TermAdjusted P value
1GO:0030931: heterotetrameric ADPG pyrophosphorylase complex0.00E+00
2GO:0044391: ribosomal subunit0.00E+00
3GO:0009571: proplastid stroma0.00E+00
4GO:0098572: stromal side of plastid thylakoid membrane0.00E+00
5GO:0009507: chloroplast1.39E-85
6GO:0009570: chloroplast stroma7.05E-76
7GO:0009941: chloroplast envelope7.38E-70
8GO:0009579: thylakoid1.01E-49
9GO:0009534: chloroplast thylakoid1.25E-49
10GO:0009535: chloroplast thylakoid membrane3.24E-45
11GO:0031977: thylakoid lumen1.81E-16
12GO:0005840: ribosome1.64E-15
13GO:0009543: chloroplast thylakoid lumen2.33E-15
14GO:0010319: stromule3.96E-13
15GO:0010287: plastoglobule1.86E-12
16GO:0048046: apoplast8.59E-10
17GO:0016020: membrane4.78E-09
18GO:0009533: chloroplast stromal thylakoid4.56E-06
19GO:0009523: photosystem II2.07E-05
20GO:0005960: glycine cleavage complex2.99E-05
21GO:0030095: chloroplast photosystem II5.88E-05
22GO:0030076: light-harvesting complex7.05E-05
23GO:0009706: chloroplast inner membrane7.44E-05
24GO:0031969: chloroplast membrane1.46E-04
25GO:0009536: plastid1.80E-04
26GO:0009538: photosystem I reaction center2.80E-04
27GO:0009782: photosystem I antenna complex2.84E-04
28GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex2.84E-04
29GO:0009522: photosystem I2.92E-04
30GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)4.15E-04
31GO:0009295: nucleoid4.89E-04
32GO:0030093: chloroplast photosystem I6.25E-04
33GO:0000311: plastid large ribosomal subunit7.56E-04
34GO:0009508: plastid chromosome8.57E-04
35GO:0015934: large ribosomal subunit9.50E-04
36GO:0010007: magnesium chelatase complex1.01E-03
37GO:0022626: cytosolic ribosome1.01E-03
38GO:0009654: photosystem II oxygen evolving complex1.45E-03
39GO:0009517: PSII associated light-harvesting complex II1.94E-03
40GO:0009512: cytochrome b6f complex2.48E-03
41GO:0019898: extrinsic component of membrane3.01E-03
42GO:0045263: proton-transporting ATP synthase complex, coupling factor F(o)3.06E-03
43GO:0009840: chloroplastic endopeptidase Clp complex3.68E-03
44GO:0022625: cytosolic large ribosomal subunit3.77E-03
45GO:0009501: amyloplast5.03E-03
46GO:0042644: chloroplast nucleoid6.54E-03
47GO:0045298: tubulin complex6.54E-03
48GO:0005763: mitochondrial small ribosomal subunit6.54E-03
49GO:0000312: plastid small ribosomal subunit1.19E-02
50GO:0015935: small ribosomal subunit1.72E-02
51GO:0009532: plastid stroma1.72E-02
52GO:0005759: mitochondrial matrix3.01E-02
53GO:0005667: transcription factor complex3.98E-02
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Gene type



Gene DE type