Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT4G24770

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0034337: RNA folding0.00E+00
2GO:0006982: response to lipid hydroperoxide0.00E+00
3GO:2000505: regulation of energy homeostasis0.00E+00
4GO:0002184: cytoplasmic translational termination0.00E+00
5GO:0010335: response to non-ionic osmotic stress0.00E+00
6GO:1901918: negative regulation of exoribonuclease activity0.00E+00
7GO:0017038: protein import0.00E+00
8GO:0090279: regulation of calcium ion import0.00E+00
9GO:0090470: shoot organ boundary specification0.00E+00
10GO:0071474: cellular hyperosmotic response0.00E+00
11GO:0018023: peptidyl-lysine trimethylation0.00E+00
12GO:0051484: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway involved in terpenoid biosynthetic process0.00E+00
13GO:0015995: chlorophyll biosynthetic process2.04E-12
14GO:0055114: oxidation-reduction process4.82E-09
15GO:0010021: amylopectin biosynthetic process4.05E-07
16GO:0019252: starch biosynthetic process8.11E-07
17GO:0015979: photosynthesis3.37E-05
18GO:0010207: photosystem II assembly6.35E-05
19GO:0019253: reductive pentose-phosphate cycle6.35E-05
20GO:0009904: chloroplast accumulation movement8.98E-05
21GO:0009658: chloroplast organization9.87E-05
22GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway1.30E-04
23GO:0009903: chloroplast avoidance movement1.78E-04
24GO:0009854: oxidative photosynthetic carbon pathway1.78E-04
25GO:0006633: fatty acid biosynthetic process2.12E-04
26GO:0009735: response to cytokinin2.50E-04
27GO:0016559: peroxisome fission2.94E-04
28GO:0010362: negative regulation of anion channel activity by blue light2.94E-04
29GO:0009090: homoserine biosynthetic process2.94E-04
30GO:0015969: guanosine tetraphosphate metabolic process2.94E-04
31GO:1902478: negative regulation of defense response to bacterium, incompatible interaction2.94E-04
32GO:0031426: polycistronic mRNA processing2.94E-04
33GO:1904966: positive regulation of vitamin E biosynthetic process2.94E-04
34GO:0009704: de-etiolation2.94E-04
35GO:0043953: protein transport by the Tat complex2.94E-04
36GO:0000481: maturation of 5S rRNA2.94E-04
37GO:1904964: positive regulation of phytol biosynthetic process2.94E-04
38GO:2000070: regulation of response to water deprivation2.94E-04
39GO:0010426: DNA methylation on cytosine within a CHH sequence2.94E-04
40GO:0065002: intracellular protein transmembrane transport2.94E-04
41GO:0043686: co-translational protein modification2.94E-04
42GO:0051775: response to redox state2.94E-04
43GO:0071277: cellular response to calcium ion2.94E-04
44GO:0046167: glycerol-3-phosphate biosynthetic process2.94E-04
45GO:1902458: positive regulation of stomatal opening2.94E-04
46GO:0006783: heme biosynthetic process4.36E-04
47GO:0006096: glycolytic process4.59E-04
48GO:0006779: porphyrin-containing compound biosynthetic process5.16E-04
49GO:0006782: protoporphyrinogen IX biosynthetic process6.02E-04
50GO:0010027: thylakoid membrane organization6.04E-04
51GO:1903426: regulation of reactive oxygen species biosynthetic process6.45E-04
52GO:0030388: fructose 1,6-bisphosphate metabolic process6.45E-04
53GO:0051262: protein tetramerization6.45E-04
54GO:0042819: vitamin B6 biosynthetic process6.45E-04
55GO:0018026: peptidyl-lysine monomethylation6.45E-04
56GO:1902326: positive regulation of chlorophyll biosynthetic process6.45E-04
57GO:0006435: threonyl-tRNA aminoacylation6.45E-04
58GO:0006650: glycerophospholipid metabolic process6.45E-04
59GO:0010155: regulation of proton transport6.45E-04
60GO:0006729: tetrahydrobiopterin biosynthetic process6.45E-04
61GO:0018119: peptidyl-cysteine S-nitrosylation6.94E-04
62GO:0006094: gluconeogenesis8.98E-04
63GO:0010143: cutin biosynthetic process1.01E-03
64GO:0000913: preprophase band assembly1.04E-03
65GO:0031022: nuclear migration along microfilament1.04E-03
66GO:0034051: negative regulation of plant-type hypersensitive response1.04E-03
67GO:0006000: fructose metabolic process1.04E-03
68GO:0046168: glycerol-3-phosphate catabolic process1.04E-03
69GO:0044375: regulation of peroxisome size1.04E-03
70GO:0005977: glycogen metabolic process1.04E-03
71GO:0009853: photorespiration1.13E-03
72GO:0005975: carbohydrate metabolic process1.22E-03
73GO:0006631: fatty acid metabolic process1.40E-03
74GO:0006020: inositol metabolic process1.50E-03
75GO:1901000: regulation of response to salt stress1.50E-03
76GO:0009152: purine ribonucleotide biosynthetic process1.50E-03
77GO:0046653: tetrahydrofolate metabolic process1.50E-03
78GO:0006107: oxaloacetate metabolic process1.50E-03
79GO:0010239: chloroplast mRNA processing1.50E-03
80GO:0009052: pentose-phosphate shunt, non-oxidative branch1.50E-03
81GO:0033014: tetrapyrrole biosynthetic process1.50E-03
82GO:0008615: pyridoxine biosynthetic process1.50E-03
83GO:0010731: protein glutathionylation1.50E-03
84GO:0006072: glycerol-3-phosphate metabolic process1.50E-03
85GO:0042823: pyridoxal phosphate biosynthetic process1.50E-03
86GO:0009067: aspartate family amino acid biosynthetic process1.50E-03
87GO:0010371: regulation of gibberellin biosynthetic process1.50E-03
88GO:0007017: microtubule-based process1.53E-03
89GO:0010109: regulation of photosynthesis2.01E-03
90GO:0019464: glycine decarboxylation via glycine cleavage system2.01E-03
91GO:0015994: chlorophyll metabolic process2.01E-03
92GO:0006546: glycine catabolic process2.01E-03
93GO:0006021: inositol biosynthetic process2.01E-03
94GO:0010600: regulation of auxin biosynthetic process2.01E-03
95GO:0006734: NADH metabolic process2.01E-03
96GO:0000304: response to singlet oxygen2.56E-03
97GO:0006564: L-serine biosynthetic process2.56E-03
98GO:0045038: protein import into chloroplast thylakoid membrane2.56E-03
99GO:0031365: N-terminal protein amino acid modification2.56E-03
100GO:0006520: cellular amino acid metabolic process2.74E-03
101GO:0009646: response to absence of light2.94E-03
102GO:0007018: microtubule-based movement2.94E-03
103GO:0042549: photosystem II stabilization3.16E-03
104GO:0000470: maturation of LSU-rRNA3.16E-03
105GO:0045962: positive regulation of development, heterochronic3.16E-03
106GO:0009791: post-embryonic development3.16E-03
107GO:0046855: inositol phosphate dephosphorylation3.16E-03
108GO:0006412: translation3.77E-03
109GO:0010244: response to low fluence blue light stimulus by blue low-fluence system3.81E-03
110GO:0030488: tRNA methylation3.81E-03
111GO:0009088: threonine biosynthetic process3.81E-03
112GO:1901259: chloroplast rRNA processing3.81E-03
113GO:0046686: response to cadmium ion3.96E-03
114GO:0010161: red light signaling pathway4.49E-03
115GO:0009772: photosynthetic electron transport in photosystem II4.49E-03
116GO:0006400: tRNA modification4.49E-03
117GO:0010928: regulation of auxin mediated signaling pathway5.21E-03
118GO:0005978: glycogen biosynthetic process5.21E-03
119GO:0006605: protein targeting5.21E-03
120GO:0032508: DNA duplex unwinding5.21E-03
121GO:0006002: fructose 6-phosphate metabolic process5.98E-03
122GO:0071482: cellular response to light stimulus5.98E-03
123GO:0015996: chlorophyll catabolic process5.98E-03
124GO:0007186: G-protein coupled receptor signaling pathway5.98E-03
125GO:0006526: arginine biosynthetic process5.98E-03
126GO:0032544: plastid translation5.98E-03
127GO:0009657: plastid organization5.98E-03
128GO:0018298: protein-chromophore linkage6.37E-03
129GO:0010206: photosystem II repair6.77E-03
130GO:0090333: regulation of stomatal closure6.77E-03
131GO:0006754: ATP biosynthetic process6.77E-03
132GO:0048507: meristem development6.77E-03
133GO:0010228: vegetative to reproductive phase transition of meristem7.58E-03
134GO:0009638: phototropism7.60E-03
135GO:0009086: methionine biosynthetic process7.60E-03
136GO:0005982: starch metabolic process7.60E-03
137GO:0006535: cysteine biosynthetic process from serine8.48E-03
138GO:0043069: negative regulation of programmed cell death8.48E-03
139GO:0009089: lysine biosynthetic process via diaminopimelate9.38E-03
140GO:0009773: photosynthetic electron transport in photosystem I9.38E-03
141GO:0008285: negative regulation of cell proliferation9.38E-03
142GO:0006790: sulfur compound metabolic process1.03E-02
143GO:0016024: CDP-diacylglycerol biosynthetic process1.03E-02
144GO:0045037: protein import into chloroplast stroma1.03E-02
145GO:0009744: response to sucrose1.04E-02
146GO:0009725: response to hormone1.13E-02
147GO:0005986: sucrose biosynthetic process1.13E-02
148GO:0006108: malate metabolic process1.13E-02
149GO:0006006: glucose metabolic process1.13E-02
150GO:0009785: blue light signaling pathway1.13E-02
151GO:0018107: peptidyl-threonine phosphorylation1.13E-02
152GO:0009718: anthocyanin-containing compound biosynthetic process1.13E-02
153GO:0009636: response to toxic substance1.17E-02
154GO:0009266: response to temperature stimulus1.23E-02
155GO:0034605: cellular response to heat1.23E-02
156GO:0010020: chloroplast fission1.23E-02
157GO:0007031: peroxisome organization1.33E-02
158GO:0046854: phosphatidylinositol phosphorylation1.33E-02
159GO:0010025: wax biosynthetic process1.44E-02
160GO:0006636: unsaturated fatty acid biosynthetic process1.44E-02
161GO:0019344: cysteine biosynthetic process1.55E-02
162GO:0006289: nucleotide-excision repair1.55E-02
163GO:0009416: response to light stimulus1.62E-02
164GO:0008299: isoprenoid biosynthetic process1.66E-02
165GO:0009768: photosynthesis, light harvesting in photosystem I1.66E-02
166GO:0010073: meristem maintenance1.66E-02
167GO:0010431: seed maturation1.78E-02
168GO:0031408: oxylipin biosynthetic process1.78E-02
169GO:0006306: DNA methylation1.78E-02
170GO:0016114: terpenoid biosynthetic process1.78E-02
171GO:0016226: iron-sulfur cluster assembly1.90E-02
172GO:0010017: red or far-red light signaling pathway1.90E-02
173GO:0035428: hexose transmembrane transport1.90E-02
174GO:0010227: floral organ abscission2.02E-02
175GO:0006396: RNA processing2.07E-02
176GO:0006817: phosphate ion transport2.14E-02
177GO:0051028: mRNA transport2.27E-02
178GO:0015031: protein transport2.32E-02
179GO:0042631: cellular response to water deprivation2.40E-02
180GO:0042335: cuticle development2.40E-02
181GO:0009741: response to brassinosteroid2.53E-02
182GO:0010182: sugar mediated signaling pathway2.53E-02
183GO:0046323: glucose import2.53E-02
184GO:0015986: ATP synthesis coupled proton transport2.66E-02
185GO:0008654: phospholipid biosynthetic process2.80E-02
186GO:0000302: response to reactive oxygen species2.94E-02
187GO:0016032: viral process3.08E-02
188GO:0030163: protein catabolic process3.22E-02
189GO:0010090: trichome morphogenesis3.22E-02
190GO:0009567: double fertilization forming a zygote and endosperm3.37E-02
191GO:0007623: circadian rhythm3.48E-02
192GO:0000910: cytokinesis3.66E-02
193GO:0016126: sterol biosynthetic process3.82E-02
194GO:0009788: negative regulation of abscisic acid-activated signaling pathway3.97E-02
195GO:0042128: nitrate assimilation4.13E-02
196GO:0009817: defense response to fungus, incompatible interaction4.61E-02
197GO:0000160: phosphorelay signal transduction system4.77E-02
198GO:0009813: flavonoid biosynthetic process4.77E-02
199GO:0010311: lateral root formation4.77E-02
200GO:0009407: toxin catabolic process4.94E-02
RankGO TermAdjusted P value
1GO:0004318: enoyl-[acyl-carrier-protein] reductase (NADH) activity0.00E+00
2GO:0004740: pyruvate dehydrogenase (acetyl-transferring) kinase activity0.00E+00
3GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity0.00E+00
4GO:0046554: malate dehydrogenase (NADP+) activity0.00E+00
5GO:0008887: glycerate kinase activity0.00E+00
6GO:0009673: low-affinity phosphate transmembrane transporter activity0.00E+00
7GO:0016631: enoyl-[acyl-carrier-protein] reductase activity0.00E+00
8GO:0050613: delta14-sterol reductase activity0.00E+00
9GO:0050515: 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase activity0.00E+00
10GO:0050278: sedoheptulose-bisphosphatase activity0.00E+00
11GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity0.00E+00
12GO:0004314: [acyl-carrier-protein] S-malonyltransferase activity0.00E+00
13GO:0030604: 1-deoxy-D-xylulose-5-phosphate reductoisomerase activity0.00E+00
14GO:0033840: NDP-glucose-starch glucosyltransferase activity0.00E+00
15GO:0008465: glycerate dehydrogenase activity0.00E+00
16GO:0008942: nitrite reductase [NAD(P)H] activity0.00E+00
17GO:0016491: oxidoreductase activity2.53E-07
18GO:0019843: rRNA binding9.18E-07
19GO:0004373: glycogen (starch) synthase activity1.41E-05
20GO:0016851: magnesium chelatase activity3.17E-05
21GO:0009011: starch synthase activity5.68E-05
22GO:0008886: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (non-phosphorylating) activity2.94E-04
23GO:0003942: N-acetyl-gamma-glutamyl-phosphate reductase activity2.94E-04
24GO:0004729: oxygen-dependent protoporphyrinogen oxidase activity2.94E-04
25GO:0004801: sedoheptulose-7-phosphate:D-glyceraldehyde-3-phosphate glyceronetransferase activity2.94E-04
26GO:0005227: calcium activated cation channel activity2.94E-04
27GO:0080132: fatty acid alpha-hydroxylase activity2.94E-04
28GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity2.94E-04
29GO:0008746: NAD(P)+ transhydrogenase activity2.94E-04
30GO:0004325: ferrochelatase activity2.94E-04
31GO:0004853: uroporphyrinogen decarboxylase activity2.94E-04
32GO:0042586: peptide deformylase activity2.94E-04
33GO:0008124: 4-alpha-hydroxytetrahydrobiopterin dehydratase activity2.94E-04
34GO:0031957: very long-chain fatty acid-CoA ligase activity2.94E-04
35GO:0051287: NAD binding2.96E-04
36GO:0009977: proton motive force dependent protein transmembrane transporter activity6.45E-04
37GO:0004617: phosphoglycerate dehydrogenase activity6.45E-04
38GO:0052832: inositol monophosphate 3-phosphatase activity6.45E-04
39GO:0033201: alpha-1,4-glucan synthase activity6.45E-04
40GO:0003844: 1,4-alpha-glucan branching enzyme activity6.45E-04
41GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity6.45E-04
42GO:0016630: protochlorophyllide reductase activity6.45E-04
43GO:0004829: threonine-tRNA ligase activity6.45E-04
44GO:0019156: isoamylase activity6.45E-04
45GO:0008934: inositol monophosphate 1-phosphatase activity6.45E-04
46GO:0008728: GTP diphosphokinase activity6.45E-04
47GO:0052833: inositol monophosphate 4-phosphatase activity6.45E-04
48GO:0004412: homoserine dehydrogenase activity6.45E-04
49GO:0036381: pyridoxal 5'-phosphate synthase (glutamine hydrolysing) activity6.45E-04
50GO:0050017: L-3-cyanoalanine synthase activity6.45E-04
51GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity6.45E-04
52GO:0042389: omega-3 fatty acid desaturase activity6.45E-04
53GO:0004618: phosphoglycerate kinase activity6.45E-04
54GO:0005525: GTP binding9.54E-04
55GO:0008266: poly(U) RNA binding1.01E-03
56GO:0015462: ATPase-coupled protein transmembrane transporter activity1.04E-03
57GO:0005504: fatty acid binding1.04E-03
58GO:0043169: cation binding1.04E-03
59GO:0004751: ribose-5-phosphate isomerase activity1.04E-03
60GO:0004148: dihydrolipoyl dehydrogenase activity1.04E-03
61GO:0016742: hydroxymethyl-, formyl- and related transferase activity1.04E-03
62GO:0004367: glycerol-3-phosphate dehydrogenase [NAD+] activity1.04E-03
63GO:0070402: NADPH binding1.04E-03
64GO:0008864: formyltetrahydrofolate deformylase activity1.04E-03
65GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor1.04E-03
66GO:0004072: aspartate kinase activity1.50E-03
67GO:0004375: glycine dehydrogenase (decarboxylating) activity1.50E-03
68GO:0048027: mRNA 5'-UTR binding1.50E-03
69GO:0009882: blue light photoreceptor activity1.50E-03
70GO:0043023: ribosomal large subunit binding1.50E-03
71GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor1.50E-03
72GO:0003755: peptidyl-prolyl cis-trans isomerase activity1.89E-03
73GO:0042802: identical protein binding2.01E-03
74GO:0070628: proteasome binding2.01E-03
75GO:0045430: chalcone isomerase activity2.01E-03
76GO:0043495: protein anchor2.01E-03
77GO:0016279: protein-lysine N-methyltransferase activity2.01E-03
78GO:0003735: structural constituent of ribosome2.33E-03
79GO:0003959: NADPH dehydrogenase activity2.56E-03
80GO:0004332: fructose-bisphosphate aldolase activity3.16E-03
81GO:0031593: polyubiquitin binding3.16E-03
82GO:0004556: alpha-amylase activity3.16E-03
83GO:0004130: cytochrome-c peroxidase activity3.16E-03
84GO:0035673: oligopeptide transmembrane transporter activity3.16E-03
85GO:0004366: glycerol-3-phosphate O-acyltransferase activity3.16E-03
86GO:0016615: malate dehydrogenase activity3.16E-03
87GO:0042578: phosphoric ester hydrolase activity3.16E-03
88GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity3.16E-03
89GO:0016887: ATPase activity3.57E-03
90GO:0004124: cysteine synthase activity3.81E-03
91GO:0004017: adenylate kinase activity3.81E-03
92GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity3.81E-03
93GO:0102391: decanoate--CoA ligase activity3.81E-03
94GO:0030060: L-malate dehydrogenase activity3.81E-03
95GO:0005261: cation channel activity3.81E-03
96GO:0003886: DNA (cytosine-5-)-methyltransferase activity3.81E-03
97GO:0009927: histidine phosphotransfer kinase activity3.81E-03
98GO:0005200: structural constituent of cytoskeleton4.35E-03
99GO:0019899: enzyme binding4.49E-03
100GO:0004467: long-chain fatty acid-CoA ligase activity4.49E-03
101GO:0016597: amino acid binding4.61E-03
102GO:0003723: RNA binding4.85E-03
103GO:0016168: chlorophyll binding5.16E-03
104GO:0004033: aldo-keto reductase (NADP) activity5.21E-03
105GO:0008135: translation factor activity, RNA binding5.98E-03
106GO:0008173: RNA methyltransferase activity5.98E-03
107GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water5.98E-03
108GO:0071949: FAD binding6.77E-03
109GO:0003924: GTPase activity6.81E-03
110GO:0008017: microtubule binding7.58E-03
111GO:0004028: 3-chloroallyl aldehyde dehydrogenase activity7.60E-03
112GO:0004743: pyruvate kinase activity7.60E-03
113GO:0030955: potassium ion binding7.60E-03
114GO:0003746: translation elongation factor activity8.08E-03
115GO:0030234: enzyme regulator activity8.48E-03
116GO:0004364: glutathione transferase activity1.00E-02
117GO:0015198: oligopeptide transporter activity1.03E-02
118GO:0003729: mRNA binding1.07E-02
119GO:0004565: beta-galactosidase activity1.13E-02
120GO:0005315: inorganic phosphate transmembrane transporter activity1.13E-02
121GO:0031072: heat shock protein binding1.13E-02
122GO:0000155: phosphorelay sensor kinase activity1.13E-02
123GO:0005524: ATP binding1.21E-02
124GO:0042973: glucan endo-1,3-beta-D-glucosidase activity1.23E-02
125GO:0031409: pigment binding1.44E-02
126GO:0043130: ubiquitin binding1.55E-02
127GO:0005528: FK506 binding1.55E-02
128GO:0051536: iron-sulfur cluster binding1.55E-02
129GO:0003777: microtubule motor activity1.56E-02
130GO:0022891: substrate-specific transmembrane transporter activity2.02E-02
131GO:0016787: hydrolase activity2.14E-02
132GO:0003727: single-stranded RNA binding2.14E-02
133GO:0042803: protein homodimerization activity2.18E-02
134GO:0046933: proton-transporting ATP synthase activity, rotational mechanism2.53E-02
135GO:0016853: isomerase activity2.66E-02
136GO:0005355: glucose transmembrane transporter activity2.66E-02
137GO:0010181: FMN binding2.66E-02
138GO:0005507: copper ion binding2.74E-02
139GO:0004872: receptor activity2.80E-02
140GO:0003684: damaged DNA binding3.37E-02
141GO:0016791: phosphatase activity3.37E-02
142GO:0008236: serine-type peptidase activity4.44E-02
143GO:0004222: metalloendopeptidase activity4.94E-02
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Gene type



Gene DE type