Gene description
TAIR ID: AT4G04890
Short description: protodermal factor 2
Pathogen responsiveness: -0.33
General responsiveness: 0.49
Orthologous
GO biological process
maintenance of floral organ identity, regulation of transcription, DNA-templated, seed germination, epidermal cell differentiation, cotyledon development, transcription
GO cellular component
nucleus
GO molecular function
transcription factor activity, sequence-specific DNA binding, lipid binding
Protein domain
| Pfam | PF00046, Homeobox domain |
| Pfam | PF01852, START domain |
| SMART | SM00234, START |
| SMART | SM00389, HOX |
Metabolic pathway
Not involved in metabolic pathway
KEGG pathway
Not involved in KEGG pathway
Transcriptional regulation
Regulator:
none
Target:
AT1G58430, AT4G13630, AT5G07590, AT5G39120, AT2G20470, AT3G48370, AT3G23180, AT2G18480, AT5G39150, AT2G42840, AT2G24490, AT1G11600, AT5G39180, AT3G56240, AT5G19520, AT3G58080, AT5G01140
Protein-protein interaction network
The number of partners (degree) is: 9 (Top20%)
click to view PPI networkCoexpression network
Differentially expressed condition 
16 conditions
| Series | Control | Treatment | Log2FC | Adj. P value |
|---|---|---|---|---|
| GSE17464 | Penta, control | Penta, Alternaria brassicicola 3 d | 1.57 | 1.70E-04 |
| GSE17464 | Penta, control | Penta, PstDC3000 12 h | 1.83 | 1.28E-05 |
| GSE17500 | Col, miR393, control 0 h | Col, miR393, PstDC3000 24 h | -1.52 | 1.95E-04 |
| GSE18978 | Col, WT, control 24 h | Col, WT, PsmES4326 24 h | -2.55 | 8.11E-09 |
| GSE45212 | Col, WT, PstDC3000 AvrRpt2 0 h | Col, WT, PstDC3000 AvrRpt2 12 h | -2.14 | 7.39E-15 |
| GSE45212 | Col, WT, PstDC3000 AvrRpt2 0 h | Col, WT, PstDC3000 AvrRpt2 4 h | -1.58 | 2.18E-12 |
| GSE45212 | Col, WT, PstDC3000 AvrRpt2 0 h | Col, WT, PstDC3000 AvrRpt2 8 h | -2.02 | 2.24E-14 |
| GSE45212 | Col, med14, PstDC3000 AvrRpt2 0 h | Col, med14, PstDC3000 AvrRpt2 12 h | -2.28 | 3.49E-15 |
| GSE45212 | Col, med14, PstDC3000 AvrRpt2 0 h | Col, med14, PstDC3000 AvrRpt2 4 h | -2.09 | 1.18E-14 |
| GSE45212 | Col, med14, PstDC3000 AvrRpt2 0 h | Col, med14, PstDC3000 AvrRpt2 8 h | -2.28 | 3.04E-15 |
| GSE45214 | Col, med16, PstDC3000 AvrRpt2 0 h | Col, med16, PstDC3000 AvrRpt2 4 h | -2.41 | 1.23E-11 |
| GSE50526 | Col, WT, mock 24 h | Col, WT, A. brassicicola 24 h | -1.51 | 2.50E-03 |
| GSE5520 | Col, WT, control 10 h | Col, WT, Cor- 10 h | -2.11 | 6.58E-07 |
| GSE5520 | Col, WT, control 7 h | Col, WT, PstDC3000 7 h | -2.23 | 5.23E-09 |
| GSE56094 | Col, WT, control 12 h | Col, WT, PstDC3000 12 h | -1.55 | 8.46E-12 |
| GSE58954 | Col, WT, Psm AvrRpt2 0 h | Col, WT, Psm AvrRpt2 6 h | -1.73 | 4.86E-03 |
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