co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G04890

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0051484: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway involved in terpenoid biosynthetic process	0.00E+00
2	GO:0046838: phosphorylated carbohydrate dephosphorylation	0.00E+00
3	GO:0035970: peptidyl-threonine dephosphorylation	0.00E+00
4	GO:0090042: tubulin deacetylation	0.00E+00
5	GO:0000025: maltose catabolic process	6.42E-05
6	GO:0010480: microsporocyte differentiation	6.42E-05
7	GO:0005983: starch catabolic process	9.25E-05
8	GO:0010289: homogalacturonan biosynthetic process	1.55E-04
9	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	3.82E-04
10	GO:0006020: inositol metabolic process	3.82E-04
11	GO:0051639: actin filament network formation	3.82E-04
12	GO:0051764: actin crosslink formation	5.10E-04
13	GO:0031122: cytoplasmic microtubule organization	5.10E-04
14	GO:0006021: inositol biosynthetic process	5.10E-04
15	GO:0019287: isopentenyl diphosphate biosynthetic process, mevalonate pathway	5.10E-04
16	GO:0010021: amylopectin biosynthetic process	5.10E-04
17	GO:0016120: carotene biosynthetic process	6.45E-04
18	GO:0042549: photosystem II stabilization	7.90E-04
19	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	7.90E-04
20	GO:0046855: inositol phosphate dephosphorylation	7.90E-04
21	GO:0048437: floral organ development	1.10E-03
22	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	1.18E-03
23	GO:0000105: histidine biosynthetic process	1.26E-03
24	GO:0008610: lipid biosynthetic process	1.26E-03
25	GO:0071482: cellular response to light stimulus	1.44E-03
26	GO:0045036: protein targeting to chloroplast	2.01E-03
27	GO:0019538: protein metabolic process	2.01E-03
28	GO:0006535: cysteine biosynthetic process from serine	2.01E-03
29	GO:0046856: phosphatidylinositol dephosphorylation	2.21E-03
30	GO:0009773: photosynthetic electron transport in photosystem I	2.21E-03
31	GO:1903507: negative regulation of nucleic acid-templated transcription	2.21E-03
32	GO:0048229: gametophyte development	2.21E-03
33	GO:0006790: sulfur compound metabolic process	2.42E-03
34	GO:0018105: peptidyl-serine phosphorylation	2.52E-03
35	GO:0018107: peptidyl-threonine phosphorylation	2.64E-03
36	GO:0009718: anthocyanin-containing compound biosynthetic process	2.64E-03
37	GO:0010075: regulation of meristem growth	2.64E-03
38	GO:0010102: lateral root morphogenesis	2.64E-03
39	GO:0006006: glucose metabolic process	2.64E-03
40	GO:0009934: regulation of meristem structural organization	2.87E-03
41	GO:0046854: phosphatidylinositol phosphorylation	3.09E-03
42	GO:0019344: cysteine biosynthetic process	3.57E-03
43	GO:0051017: actin filament bundle assembly	3.57E-03
44	GO:0046686: response to cadmium ion	3.71E-03
45	GO:0008299: isoprenoid biosynthetic process	3.82E-03
46	GO:0016575: histone deacetylation	3.82E-03
47	GO:0035556: intracellular signal transduction	4.06E-03
48	GO:2000022: regulation of jasmonic acid mediated signaling pathway	4.34E-03
49	GO:0048653: anther development	5.43E-03
50	GO:0009791: post-embryonic development	6.31E-03
51	GO:0019252: starch biosynthetic process	6.31E-03
52	GO:1901657: glycosyl compound metabolic process	7.24E-03
53	GO:0016126: sterol biosynthetic process	8.54E-03
54	GO:0010027: thylakoid membrane organization	8.54E-03
55	GO:0046777: protein autophosphorylation	8.59E-03
56	GO:0009816: defense response to bacterium, incompatible interaction	8.88E-03
57	GO:0015979: photosynthesis	9.17E-03
58	GO:0015995: chlorophyll biosynthetic process	9.57E-03
59	GO:0009817: defense response to fungus, incompatible interaction	1.03E-02
60	GO:0016042: lipid catabolic process	1.15E-02
61	GO:0016051: carbohydrate biosynthetic process	1.22E-02
62	GO:0031347: regulation of defense response	1.66E-02
63	GO:0009611: response to wounding	2.16E-02
64	GO:0042744: hydrogen peroxide catabolic process	2.97E-02
65	GO:0007623: circadian rhythm	3.41E-02
66	GO:0010150: leaf senescence	3.41E-02
67	GO:0010228: vegetative to reproductive phase transition of meristem	3.52E-02
68	GO:0009739: response to gibberellin	3.69E-02
69	GO:0006470: protein dephosphorylation	3.75E-02
70	GO:0010468: regulation of gene expression	3.86E-02
71	GO:0006468: protein phosphorylation	4.07E-02
72	GO:0009733: response to auxin	4.78E-02

Rank	GO Term	Adjusted P value
1	GO:0102193: protein-ribulosamine 3-kinase activity	0.00E+00
2	GO:0051721: protein phosphatase 2A binding	0.00E+00
3	GO:0042903: tubulin deacetylase activity	0.00E+00
4	GO:0016730: oxidoreductase activity, acting on iron-sulfur proteins as donors	0.00E+00
5	GO:0030604: 1-deoxy-D-xylulose-5-phosphate reductoisomerase activity	0.00E+00
6	GO:0090471: 9,15,9'-tri-cis-zeta-carotene isomerase activity	0.00E+00
7	GO:0043014: alpha-tubulin binding	0.00E+00
8	GO:0004723: calcium-dependent protein serine/threonine phosphatase activity	1.57E-05
9	GO:0003879: ATP phosphoribosyltransferase activity	6.42E-05
10	GO:0030941: chloroplast targeting sequence binding	6.42E-05
11	GO:0050308: sugar-phosphatase activity	6.42E-05
12	GO:0004134: 4-alpha-glucanotransferase activity	6.42E-05
13	GO:0008568: microtubule-severing ATPase activity	6.42E-05
14	GO:0019203: carbohydrate phosphatase activity	6.42E-05
15	GO:0004163: diphosphomevalonate decarboxylase activity	6.42E-05
16	GO:0052832: inositol monophosphate 3-phosphatase activity	1.55E-04
17	GO:0033201: alpha-1,4-glucan synthase activity	1.55E-04
18	GO:0008934: inositol monophosphate 1-phosphatase activity	1.55E-04
19	GO:0052833: inositol monophosphate 4-phosphatase activity	1.55E-04
20	GO:0050017: L-3-cyanoalanine synthase activity	1.55E-04
21	GO:0070402: NADPH binding	2.63E-04
22	GO:0004373: glycogen (starch) synthase activity	2.63E-04
23	GO:0019201: nucleotide kinase activity	3.82E-04
24	GO:0004445: inositol-polyphosphate 5-phosphatase activity	3.82E-04
25	GO:0008893: guanosine-3',5'-bis(diphosphate) 3'-diphosphatase activity	3.82E-04
26	GO:0048487: beta-tubulin binding	3.82E-04
27	GO:0051861: glycolipid binding	5.10E-04
28	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	5.10E-04
29	GO:0009011: starch synthase activity	5.10E-04
30	GO:2001070: starch binding	7.90E-04
31	GO:0042578: phosphoric ester hydrolase activity	7.90E-04
32	GO:0034485: phosphatidylinositol-3,4,5-trisphosphate 5-phosphatase activity	7.90E-04
33	GO:0004124: cysteine synthase activity	9.40E-04
34	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	9.40E-04
35	GO:0004017: adenylate kinase activity	9.40E-04
36	GO:0005524: ATP binding	1.42E-03
37	GO:0032041: NAD-dependent histone deacetylase activity (H3-K14 specific)	1.44E-03
38	GO:0008138: protein tyrosine/serine/threonine phosphatase activity	1.62E-03
39	GO:0004439: phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity	2.42E-03
40	GO:0004672: protein kinase activity	3.39E-03
41	GO:0004407: histone deacetylase activity	3.57E-03
42	GO:0005528: FK506 binding	3.57E-03
43	GO:0003714: transcription corepressor activity	3.57E-03
44	GO:0004707: MAP kinase activity	4.08E-03
45	GO:0033612: receptor serine/threonine kinase binding	4.08E-03
46	GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity	4.34E-03
47	GO:0042802: identical protein binding	5.33E-03
48	GO:0016787: hydrolase activity	6.00E-03
49	GO:0016853: isomerase activity	6.01E-03
50	GO:0004674: protein serine/threonine kinase activity	6.06E-03
51	GO:0016301: kinase activity	6.44E-03
52	GO:0016788: hydrolase activity, acting on ester bonds	6.60E-03
53	GO:0048038: quinone binding	6.61E-03
54	GO:0051015: actin filament binding	7.24E-03
55	GO:0052689: carboxylic ester hydrolase activity	8.88E-03
56	GO:0009931: calcium-dependent protein serine/threonine kinase activity	9.22E-03
57	GO:0004683: calmodulin-dependent protein kinase activity	9.57E-03
58	GO:0102483: scopolin beta-glucosidase activity	9.57E-03
59	GO:0004721: phosphoprotein phosphatase activity	9.57E-03
60	GO:0008236: serine-type peptidase activity	9.93E-03
61	GO:0030145: manganese ion binding	1.14E-02
62	GO:0008422: beta-glucosidase activity	1.29E-02
63	GO:0046872: metal ion binding	1.35E-02
64	GO:0043621: protein self-association	1.54E-02
65	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	1.62E-02
66	GO:0003779: actin binding	2.26E-02
67	GO:0004252: serine-type endopeptidase activity	2.92E-02
68	GO:0030170: pyridoxal phosphate binding	2.92E-02
69	GO:0005509: calcium ion binding	3.94E-02
70	GO:0042626: ATPase activity, coupled to transmembrane movement of substances	4.04E-02
71	GO:0008168: methyltransferase activity	4.52E-02
72	GO:0000287: magnesium ion binding	4.58E-02
73	GO:0004601: peroxidase activity	4.65E-02

Rank	GO Term	Adjusted P value
1	GO:0009507: chloroplast	3.06E-12
2	GO:0009570: chloroplast stroma	8.11E-07
3	GO:0009535: chloroplast thylakoid membrane	7.40E-06
4	GO:0009501: amyloplast	2.83E-05
5	GO:0010287: plastoglobule	3.11E-04
6	GO:0032432: actin filament bundle	3.82E-04
7	GO:0031359: integral component of chloroplast outer membrane	1.10E-03
8	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	1.62E-03
9	GO:0005884: actin filament	2.21E-03
10	GO:0009534: chloroplast thylakoid	4.81E-03
11	GO:0009941: chloroplast envelope	5.59E-03
12	GO:0009707: chloroplast outer membrane	1.03E-02
13	GO:0009579: thylakoid	2.53E-02
14	GO:0009543: chloroplast thylakoid lumen	2.71E-02