GO Enrichment Analysis of Co-expressed Genes with
AT4G04890
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0090627: plant epidermal cell differentiation | 0.00E+00 |
| 2 | GO:0045038: protein import into chloroplast thylakoid membrane | 3.83E-06 |
| 3 | GO:0015995: chlorophyll biosynthetic process | 1.87E-05 |
| 4 | GO:0000373: Group II intron splicing | 2.58E-05 |
| 5 | GO:0001736: establishment of planar polarity | 1.10E-04 |
| 6 | GO:0090391: granum assembly | 1.89E-04 |
| 7 | GO:0015675: nickel cation transport | 1.89E-04 |
| 8 | GO:0009052: pentose-phosphate shunt, non-oxidative branch | 2.78E-04 |
| 9 | GO:0010021: amylopectin biosynthetic process | 3.73E-04 |
| 10 | GO:0010027: thylakoid membrane organization | 3.99E-04 |
| 11 | GO:0009913: epidermal cell differentiation | 5.82E-04 |
| 12 | GO:0009772: photosynthetic electron transport in photosystem II | 8.11E-04 |
| 13 | GO:0006614: SRP-dependent cotranslational protein targeting to membrane | 8.11E-04 |
| 14 | GO:0010196: nonphotochemical quenching | 8.11E-04 |
| 15 | GO:0006605: protein targeting | 9.32E-04 |
| 16 | GO:0048564: photosystem I assembly | 9.32E-04 |
| 17 | GO:0045292: mRNA cis splicing, via spliceosome | 9.32E-04 |
| 18 | GO:0005978: glycogen biosynthetic process | 9.32E-04 |
| 19 | GO:0042761: very long-chain fatty acid biosynthetic process | 1.32E-03 |
| 20 | GO:0005982: starch metabolic process | 1.32E-03 |
| 21 | GO:0048829: root cap development | 1.47E-03 |
| 22 | GO:0009624: response to nematode | 1.54E-03 |
| 23 | GO:0048765: root hair cell differentiation | 1.61E-03 |
| 24 | GO:2000012: regulation of auxin polar transport | 1.92E-03 |
| 25 | GO:0010025: wax biosynthetic process | 2.42E-03 |
| 26 | GO:0009695: jasmonic acid biosynthetic process | 2.77E-03 |
| 27 | GO:0031408: oxylipin biosynthetic process | 2.96E-03 |
| 28 | GO:0003333: amino acid transmembrane transport | 2.96E-03 |
| 29 | GO:0007166: cell surface receptor signaling pathway | 3.00E-03 |
| 30 | GO:0071369: cellular response to ethylene stimulus | 3.33E-03 |
| 31 | GO:0009831: plant-type cell wall modification involved in multidimensional cell growth | 3.33E-03 |
| 32 | GO:0080022: primary root development | 3.93E-03 |
| 33 | GO:0042335: cuticle development | 3.93E-03 |
| 34 | GO:0009958: positive gravitropism | 4.14E-03 |
| 35 | GO:0048825: cotyledon development | 4.56E-03 |
| 36 | GO:0019252: starch biosynthetic process | 4.56E-03 |
| 37 | GO:0016032: viral process | 4.99E-03 |
| 38 | GO:0009828: plant-type cell wall loosening | 5.45E-03 |
| 39 | GO:0015979: photosynthesis | 5.71E-03 |
| 40 | GO:0051607: defense response to virus | 5.91E-03 |
| 41 | GO:0032259: methylation | 7.07E-03 |
| 42 | GO:0010311: lateral root formation | 7.65E-03 |
| 43 | GO:0008152: metabolic process | 8.13E-03 |
| 44 | GO:0006865: amino acid transport | 8.44E-03 |
| 45 | GO:0009926: auxin polar transport | 1.04E-02 |
| 46 | GO:0009644: response to high light intensity | 1.10E-02 |
| 47 | GO:0006855: drug transmembrane transport | 1.16E-02 |
| 48 | GO:0009735: response to cytokinin | 1.20E-02 |
| 49 | GO:0009664: plant-type cell wall organization | 1.22E-02 |
| 50 | GO:0051603: proteolysis involved in cellular protein catabolic process | 1.32E-02 |
| 51 | GO:0048316: seed development | 1.48E-02 |
| 52 | GO:0006396: RNA processing | 1.68E-02 |
| 53 | GO:0009742: brassinosteroid mediated signaling pathway | 1.72E-02 |
| 54 | GO:0009845: seed germination | 2.05E-02 |
| 55 | GO:0006508: proteolysis | 2.10E-02 |
| 56 | GO:0040008: regulation of growth | 2.35E-02 |
| 57 | GO:0007623: circadian rhythm | 2.43E-02 |
| 58 | GO:0045490: pectin catabolic process | 2.43E-02 |
| 59 | GO:0009451: RNA modification | 2.47E-02 |
| 60 | GO:0008380: RNA splicing | 2.76E-02 |
| 61 | GO:0009826: unidimensional cell growth | 3.23E-02 |
| 62 | GO:0009723: response to ethylene | 3.68E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0046406: magnesium protoporphyrin IX methyltransferase activity | 0.00E+00 |
| 2 | GO:0016851: magnesium chelatase activity | 1.17E-06 |
| 3 | GO:0004321: fatty-acyl-CoA synthase activity | 4.45E-05 |
| 4 | GO:0005528: FK506 binding | 1.05E-04 |
| 5 | GO:0003844: 1,4-alpha-glucan branching enzyme activity | 1.10E-04 |
| 6 | GO:0015099: nickel cation transmembrane transporter activity | 1.10E-04 |
| 7 | GO:0004751: ribose-5-phosphate isomerase activity | 1.89E-04 |
| 8 | GO:0043169: cation binding | 1.89E-04 |
| 9 | GO:0010011: auxin binding | 3.73E-04 |
| 10 | GO:0010328: auxin influx transmembrane transporter activity | 3.73E-04 |
| 11 | GO:0004525: ribonuclease III activity | 9.32E-04 |
| 12 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 9.59E-04 |
| 13 | GO:0016207: 4-coumarate-CoA ligase activity | 1.19E-03 |
| 14 | GO:0004252: serine-type endopeptidase activity | 2.12E-03 |
| 15 | GO:0004675: transmembrane receptor protein serine/threonine kinase activity | 2.46E-03 |
| 16 | GO:0016787: hydrolase activity | 2.89E-03 |
| 17 | GO:0030570: pectate lyase activity | 3.33E-03 |
| 18 | GO:0005525: GTP binding | 3.88E-03 |
| 19 | GO:0016597: amino acid binding | 5.91E-03 |
| 20 | GO:0008236: serine-type peptidase activity | 7.14E-03 |
| 21 | GO:0003746: translation elongation factor activity | 8.71E-03 |
| 22 | GO:0004712: protein serine/threonine/tyrosine kinase activity | 9.27E-03 |
| 23 | GO:0004185: serine-type carboxypeptidase activity | 1.04E-02 |
| 24 | GO:0015293: symporter activity | 1.13E-02 |
| 25 | GO:0016887: ATPase activity | 1.14E-02 |
| 26 | GO:0015171: amino acid transmembrane transporter activity | 1.38E-02 |
| 27 | GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups | 1.48E-02 |
| 28 | GO:0016874: ligase activity | 1.58E-02 |
| 29 | GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds | 1.73E-02 |
| 30 | GO:0016829: lyase activity | 2.05E-02 |
| 31 | GO:0008017: microtubule binding | 2.51E-02 |
| 32 | GO:0042626: ATPase activity, coupled to transmembrane movement of substances | 2.88E-02 |
| 33 | GO:0042802: identical protein binding | 2.88E-02 |
| 34 | GO:0008168: methyltransferase activity | 3.23E-02 |
| 35 | GO:0004871: signal transducer activity | 4.55E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0098572: stromal side of plastid thylakoid membrane | 0.00E+00 |
| 2 | GO:0009507: chloroplast | 2.01E-07 |
| 3 | GO:0010007: magnesium chelatase complex | 4.81E-07 |
| 4 | GO:0009570: chloroplast stroma | 6.88E-06 |
| 5 | GO:0005786: signal recognition particle, endoplasmic reticulum targeting | 2.05E-05 |
| 6 | GO:0009515: granal stacked thylakoid | 4.45E-05 |
| 7 | GO:0009534: chloroplast thylakoid | 4.83E-05 |
| 8 | GO:0080085: signal recognition particle, chloroplast targeting | 1.10E-04 |
| 9 | GO:0009535: chloroplast thylakoid membrane | 6.57E-04 |
| 10 | GO:0031977: thylakoid lumen | 7.67E-04 |
| 11 | GO:0009986: cell surface | 8.11E-04 |
| 12 | GO:0009501: amyloplast | 9.32E-04 |
| 13 | GO:0042644: chloroplast nucleoid | 1.19E-03 |
| 14 | GO:0055028: cortical microtubule | 1.47E-03 |
| 15 | GO:0090404: pollen tube tip | 1.61E-03 |
| 16 | GO:0009508: plastid chromosome | 1.92E-03 |
| 17 | GO:0005578: proteinaceous extracellular matrix | 1.92E-03 |
| 18 | GO:0009543: chloroplast thylakoid lumen | 1.92E-03 |
| 19 | GO:0009941: chloroplast envelope | 2.39E-03 |
| 20 | GO:0005875: microtubule associated complex | 2.42E-03 |
| 21 | GO:0009295: nucleoid | 5.68E-03 |
| 22 | GO:0030529: intracellular ribonucleoprotein complex | 6.15E-03 |
| 23 | GO:0005618: cell wall | 7.35E-03 |
| 24 | GO:0005623: cell | 1.97E-02 |
| 25 | GO:0005768: endosome | 2.40E-02 |
| 26 | GO:0005874: microtubule | 3.78E-02 |
| 27 | GO:0031969: chloroplast membrane | 3.87E-02 |