gene detail

Gene description

TAIR ID: AT4G03280

Short description: photosynthetic electron transfer C

Pathogen responsiveness: -0.99

General responsiveness: 3.10

Orthologous

Rice: No orthologous gene

Maize:

GRMZM2G038365

Wheat: No orthologous gene

GO biological process

photosynthetic electron transport chain, nonphotochemical quenching, defense response to bacterium, response to karrikin

GO cellular component

chloroplast thylakoid membrane, chloroplast thylakoid, plasma membrane, chloroplast envelope, thylakoid, chloroplast, membrane, integral component of membrane

GO molecular function

metal ion binding, electron transporter, transferring electrons within cytochrome b6/f complex of photosystem II activity, protein binding, transferring electrons from cytochrome b6/f complex of photosystem II activity, 2 iron, 2 sulfur cluster binding, plastoquinol--plastocyanin reductase activity

Protein domain

Pfam	PF00355, Rieske [2Fe-2S] domain
Pfam	PF08802, Cytochrome B6-F complex Fe-S subunit

Metabolic pathway

PHOTOALL-PWY: oxygenic photosynthesis
PWY-101: photosynthesis light reactions

KEGG pathway

PATH:ath00195: Photosynthesis

Transcriptional regulation

Regulator:
AT1G24260, AT5G61850, AT2G43010

Target:
none

Protein-protein interaction network

The number of partners (degree) is: 6

click to view PPI network

Coexpression network

GSE45212_WT_PSTDC3000_AVRRPT2  view
GSE56094_WT_HRPA-  view
GSE13739_WT_GO  view
GSE13739_EDS16_GO  view
GSE5686_WT_GO  view
GSE56094_WT_PSTDC3000  view

Differentially expressed condition

13 conditions

Series	Control	Treatment	Log₂FC	Adj. P value
GSE18978	Col, WT, control 24 h	Col, WT, PsmES4326 24 h	-2.22	2.18E-10
GSE45212	Col, med14, PstDC3000 AvrRpt2 0 h	Col, med14, PstDC3000 AvrRpt2 12 h	-2.12	4.13E-09
GSE45212	Col, med14, PstDC3000 AvrRpt2 0 h	Col, med14, PstDC3000 AvrRpt2 8 h	-1.68	9.92E-08
GSE5520	Col, WT, control 10 h	Col, WT, Cor- 10 h	-1.94	8.51E-06
GSE5520	Col, WT, control 7 h	Col, WT, PstDC3000 7 h	-1.65	3.68E-06
GSE56094	Col, WT, control 10 h	Col, WT, PstDC3000 10 h	-2.57	1.64E-13
GSE56094	Col, WT, control 10 h	Col, WT, hrpA- 10 h	-1.53	1.14E-05
GSE56094	Col, WT, control 11 h	Col, WT, PstDC3000 11 h	-1.93	1.04E-08
GSE56094	Col, WT, control 11 h	Col, WT, hrpA- 11 h	-1.58	5.31E-06
GSE56094	Col, WT, control 12 h	Col, WT, PstDC3000 12 h	-1.99	4.20E-09
GSE56094	Col, WT, control 13 h	Col, WT, PstDC3000 13 h	-2.10	5.05E-10
GSE56094	Col, WT, control 9 h	Col, WT, PstDC3000 9 h	-2.02	5.22E-09
GSE56094	Col, WT, control 9 h	Col, WT, hrpA- 9 h	-1.97	4.95E-08