gene detail

Gene description

TAIR ID: AT4G02220

Short description: zinc finger (MYND type) family protein / programmed cell death 2 C-terminal domain-containing protein

Pathogen responsiveness: -0.27

General responsiveness: -1.67

Orthologous

Rice:

OS03G0300200

Maize:

GRMZM2G134424

Wheat:

TA.24545.1.S1_AT

GO biological process

unkown

GO cellular component

nucleus, cytoplasm

GO molecular function

unkown

Protein domain

Pfam	PF01753, MYND finger
Pfam	PF04194, Programmed cell death protein 2, C-terminal putative domain

Metabolic pathway

Not involved in metabolic pathway

KEGG pathway

Not involved in KEGG pathway

Transcriptional regulation

Regulator:
AT3G24050, AT4G18770

Target:
none

Protein-protein interaction network

The number of partners (degree) is: 3

click to view PPI network

Coexpression network

GSE45212_WT_PSTDC3000_AVRRPT2  view
GSE56094_WT_HRPA-  view
GSE13739_WT_GO  view
GSE13739_EDS16_GO  view
GSE5686_WT_GO  view
GSE56094_WT_PSTDC3000  view
GSE45212_MED14_PSTDC3000_AVRRPT2  view
GSE26679_EDR1_GC  view

Differentially expressed condition

15 conditions

Show entries

Search:

Series	Control	Treatment	Log₂FC	Adj. P value
GSE45212	Col, med14, PstDC3000 AvrRpt2 0 h	Col, med14, PstDC3000 AvrRpt2 8 h	3.54	3.84E-17
GSE45212	Col, med14, PstDC3000 AvrRpt2 0 h	Col, med14, PstDC3000 AvrRpt2 4 h	3.06	1.89E-16
GSE45212	Col, WT, PstDC3000 AvrRpt2 0 h	Col, WT, PstDC3000 AvrRpt2 12 h	2.95	4.11E-16
GSE45212	Col, WT, PstDC3000 AvrRpt2 0 h	Col, WT, PstDC3000 AvrRpt2 8 h	2.84	7.98E-16
GSE58954	Col, WT, Psm AvrRpt2 0 h	Col, WT, Psm AvrRpt2 6 h	2.65	2.13E-04
GSE45212	Col, med14, PstDC3000 AvrRpt2 0 h	Col, med14, PstDC3000 AvrRpt2 12 h	2.53	2.04E-15
GSE5520	Col, WT, control 10 h	Col, WT, Cor- 10 h	2.28	2.67E-06
GSE9674	Ws-4, AtMYB30 ox, control	Ws-4, AtMYB30 ox, Xanthomonas strain Xcc147 6 h	2.19	1.20E-03
GSE9674	Ws-4, WT, control	Ws-4, WT, Xanthomonas strain Xcc147 6 h	2.15	1.57E-03
GSE45214	Col, med16, PstDC3000 AvrRpt2 0 h	Col, med16, PstDC3000 AvrRpt2 4 h	2.08	3.18E-13

Showing 1 to 10 of 15 entries

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