gene detail

Gene description

TAIR ID: AT3G62030

Short description: rotamase CYP 4

Pathogen responsiveness: -0.59

General responsiveness: 2.01

Orthologous

Rice: No orthologous gene

Maize:

Wheat: No orthologous gene

GO biological process

response to abscisic acid, cysteine biosynthetic process, response to cytokinin, defense response to bacterium, response to light intensity, protein peptidyl-prolyl isomerization, signal transduction, protein folding, response to mannitol, response to salt stress, response to oxidative stress

GO cellular component

chloroplast stroma, cytosolic ribosome, chloroplast thylakoid membrane, mitochondrion, chloroplast, chloroplast envelope, apoplast, thylakoid lumen, thylakoid

GO molecular function

peptidyl-prolyl cis-trans isomerase activity, protein binding

Protein domain

Pfam	PF00160, Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD

Metabolic pathway

Not involved in metabolic pathway

KEGG pathway

Not involved in KEGG pathway

Transcriptional regulation

Regulator:
AT1G51600, AT4G18770

Target:
none

Protein-protein interaction network

The number of partners (degree) is: 10 (Top20%)

click to view PPI network

Coexpression network

GSE45212_WT_PSTDC3000_AVRRPT2  view
GSE26679_WT_GC  view
GSE56094_WT_HRPA-  view
GSE13739_WT_GO  view
GSE13739_EDS16_GO  view
GSE5686_WT_GO  view
GSE56094_WT_PSTDC3000  view
GSE45212_MED14_PSTDC3000_AVRRPT2  view

Differentially expressed condition

12 conditions

Series	Control	Treatment	Log₂FC	Adj. P value
GSE18978	Col, WT, control 24 h	Col, WT, PsmES4326 24 h	-3.77	6.64E-13
GSE45212	Col, WT, PstDC3000 AvrRpt2 0 h	Col, WT, PstDC3000 AvrRpt2 12 h	-1.56	2.80E-07
GSE45212	Col, med14, PstDC3000 AvrRpt2 0 h	Col, med14, PstDC3000 AvrRpt2 12 h	-2.04	7.01E-09
GSE45212	Col, med14, PstDC3000 AvrRpt2 0 h	Col, med14, PstDC3000 AvrRpt2 8 h	-1.75	5.40E-08
GSE50526	Col, WT, mock 24 h	Col, WT, A. brassicicola 24 h	-1.58	3.72E-03
GSE5520	Col, WT, control 10 h	Col, WT, Cor- 10 h	-2.45	1.28E-04
GSE5520	Col, WT, control 7 h	Col, WT, PstDC3000 7 h	-1.84	3.72E-04
GSE56094	Col, WT, control 10 h	Col, WT, PstDC3000 10 h	-1.88	6.75E-10
GSE56094	Col, WT, control 11 h	Col, WT, PstDC3000 11 h	-1.69	2.88E-08
GSE56094	Col, WT, control 11 h	Col, WT, hrpA- 11 h	-1.68	1.45E-07
GSE56094	Col, WT, control 13 h	Col, WT, PstDC3000 13 h	-2.04	4.47E-11
GSE6176	Col, WT, control 12 h	Col, WT, PstDC3000 12 h	-1.51	5.70E-05