Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G62030

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0006223: uracil salvage0.00E+00
2GO:0016553: base conversion or substitution editing0.00E+00
3GO:0006412: translation3.48E-08
4GO:0009735: response to cytokinin2.23E-06
5GO:0032544: plastid translation6.13E-06
6GO:0043489: RNA stabilization2.08E-05
7GO:0071588: hydrogen peroxide mediated signaling pathway2.08E-05
8GO:0009409: response to cold3.27E-05
9GO:0010270: photosystem II oxygen evolving complex assembly5.37E-05
10GO:0042254: ribosome biogenesis1.34E-04
11GO:0006241: CTP biosynthetic process1.42E-04
12GO:0006165: nucleoside diphosphate phosphorylation1.42E-04
13GO:0006228: UTP biosynthetic process1.42E-04
14GO:2000122: negative regulation of stomatal complex development1.95E-04
15GO:0010037: response to carbon dioxide1.95E-04
16GO:0015976: carbon utilization1.95E-04
17GO:0019464: glycine decarboxylation via glycine cleavage system1.95E-04
18GO:0006183: GTP biosynthetic process1.95E-04
19GO:0045727: positive regulation of translation1.95E-04
20GO:0044206: UMP salvage1.95E-04
21GO:0009631: cold acclimation2.30E-04
22GO:0006544: glycine metabolic process2.51E-04
23GO:0043097: pyrimidine nucleoside salvage2.51E-04
24GO:0006563: L-serine metabolic process3.11E-04
25GO:0006828: manganese ion transport3.11E-04
26GO:0006206: pyrimidine nucleobase metabolic process3.11E-04
27GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)3.73E-04
28GO:0010019: chloroplast-nucleus signaling pathway3.73E-04
29GO:0035999: tetrahydrofolate interconversion7.18E-04
30GO:0009089: lysine biosynthetic process via diaminopimelate8.71E-04
31GO:0018119: peptidyl-cysteine S-nitrosylation8.71E-04
32GO:0016485: protein processing8.71E-04
33GO:0006816: calcium ion transport8.71E-04
34GO:0010020: chloroplast fission1.11E-03
35GO:0019253: reductive pentose-phosphate cycle1.11E-03
36GO:0009116: nucleoside metabolic process1.38E-03
37GO:0009411: response to UV1.76E-03
38GO:0000413: protein peptidyl-prolyl isomerization2.07E-03
39GO:0045454: cell redox homeostasis2.32E-03
40GO:0000302: response to reactive oxygen species2.50E-03
41GO:0046686: response to cadmium ion2.59E-03
42GO:0032502: developmental process2.61E-03
43GO:0009817: defense response to fungus, incompatible interaction3.84E-03
44GO:0010119: regulation of stomatal movement4.24E-03
45GO:0045087: innate immune response4.51E-03
46GO:0009853: photorespiration4.51E-03
47GO:0034599: cellular response to oxidative stress4.65E-03
48GO:0042542: response to hydrogen peroxide5.22E-03
49GO:0006364: rRNA processing6.59E-03
50GO:0009585: red, far-red light phototransduction6.59E-03
51GO:0006096: glycolytic process7.40E-03
52GO:0009626: plant-type hypersensitive response7.73E-03
53GO:0006396: RNA processing8.59E-03
54GO:0042742: defense response to bacterium1.01E-02
55GO:0042744: hydrogen peroxide catabolic process1.08E-02
56GO:0055114: oxidation-reduction process1.11E-02
57GO:0016036: cellular response to phosphate starvation1.18E-02
58GO:0007623: circadian rhythm1.24E-02
59GO:0009451: RNA modification1.26E-02
60GO:0015979: photosynthesis2.16E-02
61GO:0006397: mRNA processing2.67E-02
62GO:0008152: metabolic process2.78E-02
63GO:0006508: proteolysis3.13E-02
64GO:0009734: auxin-activated signaling pathway3.31E-02
65GO:0009416: response to light stimulus3.90E-02
66GO:0045893: positive regulation of transcription, DNA-templated4.30E-02
67GO:0006457: protein folding4.68E-02
RankGO TermAdjusted P value
1GO:0003735: structural constituent of ribosome5.05E-10
2GO:0019843: rRNA binding1.56E-08
3GO:0008266: poly(U) RNA binding1.45E-07
4GO:0051920: peroxiredoxin activity2.49E-06
5GO:0016209: antioxidant activity4.70E-06
6GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase5.37E-05
7GO:0004618: phosphoglycerate kinase activity5.37E-05
8GO:0050662: coenzyme binding8.51E-05
9GO:0030267: glyoxylate reductase (NADP) activity9.50E-05
10GO:0070402: NADPH binding9.50E-05
11GO:0004148: dihydrolipoyl dehydrogenase activity9.50E-05
12GO:0004550: nucleoside diphosphate kinase activity1.42E-04
13GO:0004845: uracil phosphoribosyltransferase activity1.95E-04
14GO:0004222: metalloendopeptidase activity2.19E-04
15GO:0004372: glycine hydroxymethyltransferase activity2.51E-04
16GO:0016688: L-ascorbate peroxidase activity3.11E-04
17GO:0004130: cytochrome-c peroxidase activity3.11E-04
18GO:0004849: uridine kinase activity3.73E-04
19GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity3.73E-04
20GO:0003755: peptidyl-prolyl cis-trans isomerase activity3.82E-04
21GO:0005384: manganese ion transmembrane transporter activity7.18E-04
22GO:0004089: carbonate dehydratase activity1.03E-03
23GO:0015095: magnesium ion transmembrane transporter activity1.03E-03
24GO:0031072: heat shock protein binding1.03E-03
25GO:0005528: FK506 binding1.38E-03
26GO:0004601: peroxidase activity1.58E-03
27GO:0003729: mRNA binding2.45E-03
28GO:0008237: metallopeptidase activity2.96E-03
29GO:0051082: unfolded protein binding8.42E-03
30GO:0030170: pyridoxal phosphate binding1.06E-02
31GO:0016491: oxidoreductase activity1.34E-02
32GO:0008233: peptidase activity1.94E-02
33GO:0042803: protein homodimerization activity2.31E-02
34GO:0005515: protein binding3.87E-02
35GO:0046872: metal ion binding4.65E-02
RankGO TermAdjusted P value
1GO:0044391: ribosomal subunit0.00E+00
2GO:0009570: chloroplast stroma3.80E-30
3GO:0009507: chloroplast2.54E-29
4GO:0009941: chloroplast envelope6.73E-26
5GO:0009579: thylakoid7.24E-18
6GO:0009534: chloroplast thylakoid2.18E-12
7GO:0009535: chloroplast thylakoid membrane8.56E-10
8GO:0010319: stromule1.86E-08
9GO:0005840: ribosome9.18E-07
10GO:0009543: chloroplast thylakoid lumen1.02E-06
11GO:0031977: thylakoid lumen8.85E-06
12GO:0000311: plastid large ribosomal subunit1.71E-05
13GO:0048046: apoplast3.18E-05
14GO:0010287: plastoglobule3.87E-05
15GO:0009533: chloroplast stromal thylakoid4.37E-04
16GO:0005759: mitochondrial matrix9.50E-04
17GO:0000312: plastid small ribosomal subunit1.11E-03
18GO:0009536: plastid1.92E-03
19GO:0031969: chloroplast membrane1.94E-03
20GO:0022625: cytosolic large ribosomal subunit2.04E-03
21GO:0030529: intracellular ribonucleoprotein complex3.21E-03
22GO:0022626: cytosolic ribosome4.80E-03
23GO:0009706: chloroplast inner membrane8.42E-03
24GO:0016020: membrane9.53E-03
25GO:0022627: cytosolic small ribosomal subunit1.51E-02
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Gene type



Gene DE type