Gene: AT3G61860
     


Gene description


TAIR ID: AT3G61860

Short description: RNA-binding (RRM/RBD/RNP motifs) family protein

Pathogen responsiveness: -1.87

General responsiveness: -2.39

Orthologous


Rice: No orthologous gene
Maize:

GRMZM2G064612  

Wheat:

TA.9412.1.S1_AT  


GO biological process


mRNA splicing, via spliceosome, RNA splicing


GO cellular component


nuclear speck, spliceosomal complex, cytoplasm


GO molecular function


RNA binding


Protein domain


PfamPF00076, RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
SMARTSM00360, RRM

Metabolic pathway


Not involved in metabolic pathway


Transcriptional regulation


Regulator:
AT4G36990

Target:
none

Protein-protein interaction network


The number of partners (degree) is: 10 (Top20%)

click to view PPI network

Differentially expressed condition


3 conditions



SeriesControlTreatmentLog2FCAdj. P value
GSE45212Col, med14, PstDC3000 AvrRpt2 0 hCol, med14, PstDC3000 AvrRpt2 12 h1.579.78E-14
GSE45212Col, med14, PstDC3000 AvrRpt2 0 hCol, med14, PstDC3000 AvrRpt2 4 h1.502.38E-13
GSE45212Col, med14, PstDC3000 AvrRpt2 0 hCol, med14, PstDC3000 AvrRpt2 8 h1.869.38E-15






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