gene detail

Gene description

TAIR ID: AT3G61860

Short description: RNA-binding (RRM/RBD/RNP motifs) family protein

Pathogen responsiveness: -1.87

General responsiveness: -2.39

Orthologous

Rice: No orthologous gene

Maize:

Wheat:

GO biological process

mRNA splicing, via spliceosome, RNA splicing

GO cellular component

nuclear speck, spliceosomal complex, cytoplasm

GO molecular function

RNA binding

Protein domain

Pfam	PF00076, RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
SMART	SM00360, RRM

Metabolic pathway

Not involved in metabolic pathway

KEGG pathway

PATH:ath03040: Spliceosome

Transcriptional regulation

Regulator:
AT4G36990

Target:
none

Protein-protein interaction network

The number of partners (degree) is: 10 (Top20%)

Coexpression network

Differentially expressed condition

3 conditions

Series	Control	Treatment	Log₂FC	Adj. P value
GSE45212	Col, med14, PstDC3000 AvrRpt2 0 h	Col, med14, PstDC3000 AvrRpt2 12 h	1.57	9.78E-14
GSE45212	Col, med14, PstDC3000 AvrRpt2 0 h	Col, med14, PstDC3000 AvrRpt2 4 h	1.50	2.38E-13
GSE45212	Col, med14, PstDC3000 AvrRpt2 0 h	Col, med14, PstDC3000 AvrRpt2 8 h	1.86	9.38E-15