GO Enrichment Analysis of Co-expressed Genes with
AT3G61860
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0055122: response to very low light intensity stimulus | 0.00E+00 |
| 2 | GO:0039694: viral RNA genome replication | 0.00E+00 |
| 3 | GO:0031564: transcription antitermination | 0.00E+00 |
| 4 | GO:0070478: nuclear-transcribed mRNA catabolic process, 3'-5' exonucleolytic nonsense-mediated decay | 0.00E+00 |
| 5 | GO:0043419: urea catabolic process | 0.00E+00 |
| 6 | GO:0032499: detection of peptidoglycan | 0.00E+00 |
| 7 | GO:0045900: negative regulation of translational elongation | 0.00E+00 |
| 8 | GO:0002752: cell surface pattern recognition receptor signaling pathway | 0.00E+00 |
| 9 | GO:0002221: pattern recognition receptor signaling pathway | 4.16E-07 |
| 10 | GO:0080142: regulation of salicylic acid biosynthetic process | 7.19E-06 |
| 11 | GO:0009868: jasmonic acid and ethylene-dependent systemic resistance, jasmonic acid mediated signaling pathway | 8.78E-05 |
| 12 | GO:0006422: aspartyl-tRNA aminoacylation | 8.78E-05 |
| 13 | GO:0032491: detection of molecule of fungal origin | 8.78E-05 |
| 14 | GO:0042539: hypotonic salinity response | 8.78E-05 |
| 15 | GO:0030010: establishment of cell polarity | 2.08E-04 |
| 16 | GO:0010541: acropetal auxin transport | 2.08E-04 |
| 17 | GO:0015914: phospholipid transport | 2.08E-04 |
| 18 | GO:2000072: regulation of defense response to fungus, incompatible interaction | 2.08E-04 |
| 19 | GO:0060149: negative regulation of posttranscriptional gene silencing | 2.08E-04 |
| 20 | GO:0010053: root epidermal cell differentiation | 2.16E-04 |
| 21 | GO:0006421: asparaginyl-tRNA aminoacylation | 3.48E-04 |
| 22 | GO:0071323: cellular response to chitin | 5.01E-04 |
| 23 | GO:0001676: long-chain fatty acid metabolic process | 5.01E-04 |
| 24 | GO:0007112: male meiosis cytokinesis | 6.66E-04 |
| 25 | GO:0071219: cellular response to molecule of bacterial origin | 6.66E-04 |
| 26 | GO:0019287: isopentenyl diphosphate biosynthetic process, mevalonate pathway | 6.66E-04 |
| 27 | GO:0031087: deadenylation-independent decapping of nuclear-transcribed mRNA | 6.66E-04 |
| 28 | GO:0060548: negative regulation of cell death | 6.66E-04 |
| 29 | GO:0042742: defense response to bacterium | 7.86E-04 |
| 30 | GO:0045116: protein neddylation | 8.44E-04 |
| 31 | GO:0009734: auxin-activated signaling pathway | 8.73E-04 |
| 32 | GO:0006468: protein phosphorylation | 9.62E-04 |
| 33 | GO:0045040: protein import into mitochondrial outer membrane | 1.03E-03 |
| 34 | GO:0006354: DNA-templated transcription, elongation | 1.03E-03 |
| 35 | GO:0016070: RNA metabolic process | 1.03E-03 |
| 36 | GO:0009817: defense response to fungus, incompatible interaction | 1.21E-03 |
| 37 | GO:0052033: pathogen-associated molecular pattern dependent induction by symbiont of host innate immune response | 1.23E-03 |
| 38 | GO:0000911: cytokinesis by cell plate formation | 1.23E-03 |
| 39 | GO:0006694: steroid biosynthetic process | 1.23E-03 |
| 40 | GO:0009861: jasmonic acid and ethylene-dependent systemic resistance | 1.23E-03 |
| 41 | GO:0006499: N-terminal protein myristoylation | 1.32E-03 |
| 42 | GO:0048527: lateral root development | 1.39E-03 |
| 43 | GO:0006614: SRP-dependent cotranslational protein targeting to membrane | 1.44E-03 |
| 44 | GO:0006333: chromatin assembly or disassembly | 1.44E-03 |
| 45 | GO:0045087: innate immune response | 1.52E-03 |
| 46 | GO:0016559: peroxisome fission | 1.66E-03 |
| 47 | GO:0006002: fructose 6-phosphate metabolic process | 1.89E-03 |
| 48 | GO:0009880: embryonic pattern specification | 1.89E-03 |
| 49 | GO:0006261: DNA-dependent DNA replication | 1.89E-03 |
| 50 | GO:0010093: specification of floral organ identity | 1.89E-03 |
| 51 | GO:0006972: hyperosmotic response | 1.89E-03 |
| 52 | GO:0006379: mRNA cleavage | 2.14E-03 |
| 53 | GO:0009862: systemic acquired resistance, salicylic acid mediated signaling pathway | 2.39E-03 |
| 54 | GO:0042761: very long-chain fatty acid biosynthetic process | 2.39E-03 |
| 55 | GO:0006886: intracellular protein transport | 2.49E-03 |
| 56 | GO:0000103: sulfate assimilation | 2.65E-03 |
| 57 | GO:0043069: negative regulation of programmed cell death | 2.65E-03 |
| 58 | GO:0010105: negative regulation of ethylene-activated signaling pathway | 3.21E-03 |
| 59 | GO:0000266: mitochondrial fission | 3.21E-03 |
| 60 | GO:0006807: nitrogen compound metabolic process | 3.50E-03 |
| 61 | GO:0006626: protein targeting to mitochondrion | 3.50E-03 |
| 62 | GO:0007031: peroxisome organization | 4.10E-03 |
| 63 | GO:0070588: calcium ion transmembrane transport | 4.10E-03 |
| 64 | GO:0000027: ribosomal large subunit assembly | 4.74E-03 |
| 65 | GO:0010187: negative regulation of seed germination | 4.74E-03 |
| 66 | GO:0009845: seed germination | 4.99E-03 |
| 67 | GO:0043622: cortical microtubule organization | 5.07E-03 |
| 68 | GO:0061077: chaperone-mediated protein folding | 5.42E-03 |
| 69 | GO:0007131: reciprocal meiotic recombination | 5.76E-03 |
| 70 | GO:0031348: negative regulation of defense response | 5.76E-03 |
| 71 | GO:0009738: abscisic acid-activated signaling pathway | 6.17E-03 |
| 72 | GO:0006284: base-excision repair | 6.48E-03 |
| 73 | GO:0042391: regulation of membrane potential | 7.24E-03 |
| 74 | GO:0010501: RNA secondary structure unwinding | 7.24E-03 |
| 75 | GO:0000413: protein peptidyl-prolyl isomerization | 7.24E-03 |
| 76 | GO:0007166: cell surface receptor signaling pathway | 7.26E-03 |
| 77 | GO:0006662: glycerol ether metabolic process | 7.62E-03 |
| 78 | GO:0006623: protein targeting to vacuole | 8.42E-03 |
| 79 | GO:0009791: post-embryonic development | 8.42E-03 |
| 80 | GO:0010193: response to ozone | 8.83E-03 |
| 81 | GO:0030163: protein catabolic process | 9.67E-03 |
| 82 | GO:0010252: auxin homeostasis | 1.01E-02 |
| 83 | GO:0006904: vesicle docking involved in exocytosis | 1.05E-02 |
| 84 | GO:0006970: response to osmotic stress | 1.06E-02 |
| 85 | GO:0016126: sterol biosynthetic process | 1.14E-02 |
| 86 | GO:0046777: protein autophosphorylation | 1.31E-02 |
| 87 | GO:0016310: phosphorylation | 1.39E-02 |
| 88 | GO:0045454: cell redox homeostasis | 1.46E-02 |
| 89 | GO:0009631: cold acclimation | 1.53E-02 |
| 90 | GO:0009414: response to water deprivation | 1.53E-02 |
| 91 | GO:0009867: jasmonic acid mediated signaling pathway | 1.63E-02 |
| 92 | GO:0034599: cellular response to oxidative stress | 1.68E-02 |
| 93 | GO:0006631: fatty acid metabolic process | 1.84E-02 |
| 94 | GO:0006887: exocytosis | 1.84E-02 |
| 95 | GO:0006897: endocytosis | 1.84E-02 |
| 96 | GO:0006397: mRNA processing | 1.89E-02 |
| 97 | GO:0009965: leaf morphogenesis | 2.12E-02 |
| 98 | GO:0009409: response to cold | 2.31E-02 |
| 99 | GO:0009736: cytokinin-activated signaling pathway | 2.41E-02 |
| 100 | GO:0006417: regulation of translation | 2.60E-02 |
| 101 | GO:0006096: glycolytic process | 2.72E-02 |
| 102 | GO:0009626: plant-type hypersensitive response | 2.84E-02 |
| 103 | GO:0009620: response to fungus | 2.91E-02 |
| 104 | GO:0009735: response to cytokinin | 2.93E-02 |
| 105 | GO:0009553: embryo sac development | 3.04E-02 |
| 106 | GO:0009624: response to nematode | 3.10E-02 |
| 107 | GO:0018105: peptidyl-serine phosphorylation | 3.17E-02 |
| 108 | GO:0006396: RNA processing | 3.17E-02 |
| 109 | GO:0035556: intracellular signal transduction | 3.38E-02 |
| 110 | GO:0007165: signal transduction | 3.94E-02 |
| 111 | GO:0009790: embryo development | 4.06E-02 |
| 112 | GO:0006457: protein folding | 4.14E-02 |
| 113 | GO:0006413: translational initiation | 4.35E-02 |
| 114 | GO:0010228: vegetative to reproductive phase transition of meristem | 4.73E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0009039: urease activity | 0.00E+00 |
| 2 | GO:0052822: DNA-3-methylguanine glycosylase activity | 0.00E+00 |
| 3 | GO:0004631: phosphomevalonate kinase activity | 0.00E+00 |
| 4 | GO:0001072: transcription antitermination factor activity, RNA binding | 0.00E+00 |
| 5 | GO:0043916: DNA-7-methylguanine glycosylase activity | 0.00E+00 |
| 6 | GO:2001080: chitosan binding | 0.00E+00 |
| 7 | GO:0052821: DNA-7-methyladenine glycosylase activity | 0.00E+00 |
| 8 | GO:0003905: alkylbase DNA N-glycosylase activity | 0.00E+00 |
| 9 | GO:0005524: ATP binding | 2.04E-05 |
| 10 | GO:0000166: nucleotide binding | 2.59E-05 |
| 11 | GO:0015085: calcium ion transmembrane transporter activity | 8.78E-05 |
| 12 | GO:0004815: aspartate-tRNA ligase activity | 8.78E-05 |
| 13 | GO:0038199: ethylene receptor activity | 2.08E-04 |
| 14 | GO:0019781: NEDD8 activating enzyme activity | 2.08E-04 |
| 15 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 2.21E-04 |
| 16 | GO:0016301: kinase activity | 2.55E-04 |
| 17 | GO:0005528: FK506 binding | 2.70E-04 |
| 18 | GO:0005047: signal recognition particle binding | 3.48E-04 |
| 19 | GO:0003854: 3-beta-hydroxy-delta5-steroid dehydrogenase activity | 3.48E-04 |
| 20 | GO:0004816: asparagine-tRNA ligase activity | 3.48E-04 |
| 21 | GO:0016151: nickel cation binding | 3.48E-04 |
| 22 | GO:0030527: structural constituent of chromatin | 5.01E-04 |
| 23 | GO:0051740: ethylene binding | 5.01E-04 |
| 24 | GO:0019199: transmembrane receptor protein kinase activity | 6.66E-04 |
| 25 | GO:0004675: transmembrane receptor protein serine/threonine kinase activity | 7.77E-04 |
| 26 | GO:0008641: small protein activating enzyme activity | 8.44E-04 |
| 27 | GO:0004040: amidase activity | 8.44E-04 |
| 28 | GO:0008725: DNA-3-methyladenine glycosylase activity | 8.44E-04 |
| 29 | GO:0004004: ATP-dependent RNA helicase activity | 1.09E-03 |
| 30 | GO:0102391: decanoate--CoA ligase activity | 1.23E-03 |
| 31 | GO:0003872: 6-phosphofructokinase activity | 1.44E-03 |
| 32 | GO:0008320: protein transmembrane transporter activity | 1.44E-03 |
| 33 | GO:0004467: long-chain fatty acid-CoA ligase activity | 1.44E-03 |
| 34 | GO:0004672: protein kinase activity | 1.53E-03 |
| 35 | GO:0004712: protein serine/threonine/tyrosine kinase activity | 1.65E-03 |
| 36 | GO:0008312: 7S RNA binding | 1.66E-03 |
| 37 | GO:0003724: RNA helicase activity | 1.89E-03 |
| 38 | GO:0005516: calmodulin binding | 2.28E-03 |
| 39 | GO:0004713: protein tyrosine kinase activity | 2.65E-03 |
| 40 | GO:0004673: protein histidine kinase activity | 2.65E-03 |
| 41 | GO:0008794: arsenate reductase (glutaredoxin) activity | 2.93E-03 |
| 42 | GO:0005388: calcium-transporting ATPase activity | 3.50E-03 |
| 43 | GO:0000155: phosphorelay sensor kinase activity | 3.50E-03 |
| 44 | GO:0015035: protein disulfide oxidoreductase activity | 3.80E-03 |
| 45 | GO:0008026: ATP-dependent helicase activity | 3.91E-03 |
| 46 | GO:0030553: cGMP binding | 4.10E-03 |
| 47 | GO:0008061: chitin binding | 4.10E-03 |
| 48 | GO:0003712: transcription cofactor activity | 4.10E-03 |
| 49 | GO:0030552: cAMP binding | 4.10E-03 |
| 50 | GO:0005216: ion channel activity | 5.07E-03 |
| 51 | GO:0004707: MAP kinase activity | 5.42E-03 |
| 52 | GO:0033612: receptor serine/threonine kinase binding | 5.42E-03 |
| 53 | GO:0046872: metal ion binding | 6.54E-03 |
| 54 | GO:0047134: protein-disulfide reductase activity | 6.86E-03 |
| 55 | GO:0005515: protein binding | 7.14E-03 |
| 56 | GO:0030551: cyclic nucleotide binding | 7.24E-03 |
| 57 | GO:0005249: voltage-gated potassium channel activity | 7.24E-03 |
| 58 | GO:0004527: exonuclease activity | 7.62E-03 |
| 59 | GO:0004791: thioredoxin-disulfide reductase activity | 8.02E-03 |
| 60 | GO:0004872: receptor activity | 8.42E-03 |
| 61 | GO:0003676: nucleic acid binding | 9.26E-03 |
| 62 | GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor | 9.67E-03 |
| 63 | GO:0005525: GTP binding | 1.21E-02 |
| 64 | GO:0009931: calcium-dependent protein serine/threonine kinase activity | 1.24E-02 |
| 65 | GO:0004683: calmodulin-dependent protein kinase activity | 1.28E-02 |
| 66 | GO:0003677: DNA binding | 1.30E-02 |
| 67 | GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity | 1.38E-02 |
| 68 | GO:0003697: single-stranded DNA binding | 1.63E-02 |
| 69 | GO:0003899: DNA-directed 5'-3' RNA polymerase activity | 2.41E-02 |
| 70 | GO:0003690: double-stranded DNA binding | 2.47E-02 |
| 71 | GO:0003729: mRNA binding | 2.60E-02 |
| 72 | GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups | 2.78E-02 |
| 73 | GO:0016746: transferase activity, transferring acyl groups | 3.17E-02 |
| 74 | GO:0004386: helicase activity | 3.30E-02 |
| 75 | GO:0008565: protein transporter activity | 4.14E-02 |
| 76 | GO:0008017: microtubule binding | 4.73E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0019034: viral replication complex | 0.00E+00 |
| 2 | GO:0055087: Ski complex | 0.00E+00 |
| 3 | GO:0005829: cytosol | 8.86E-06 |
| 4 | GO:0005886: plasma membrane | 2.08E-05 |
| 5 | GO:0046861: glyoxysomal membrane | 3.48E-04 |
| 6 | GO:0070062: extracellular exosome | 5.01E-04 |
| 7 | GO:0005945: 6-phosphofructokinase complex | 8.44E-04 |
| 8 | GO:0033116: endoplasmic reticulum-Golgi intermediate compartment membrane | 1.44E-03 |
| 9 | GO:0080008: Cul4-RING E3 ubiquitin ligase complex | 1.63E-03 |
| 10 | GO:0005789: endoplasmic reticulum membrane | 1.64E-03 |
| 11 | GO:0030131: clathrin adaptor complex | 1.66E-03 |
| 12 | GO:0009514: glyoxysome | 1.89E-03 |
| 13 | GO:0005742: mitochondrial outer membrane translocase complex | 1.89E-03 |
| 14 | GO:0005786: signal recognition particle, endoplasmic reticulum targeting | 1.89E-03 |
| 15 | GO:0005783: endoplasmic reticulum | 2.44E-03 |
| 16 | GO:0017119: Golgi transport complex | 2.65E-03 |
| 17 | GO:0043234: protein complex | 4.42E-03 |
| 18 | GO:0005887: integral component of plasma membrane | 4.58E-03 |
| 19 | GO:0005737: cytoplasm | 4.89E-03 |
| 20 | GO:0005741: mitochondrial outer membrane | 5.42E-03 |
| 21 | GO:0005905: clathrin-coated pit | 5.42E-03 |
| 22 | GO:0005744: mitochondrial inner membrane presequence translocase complex | 6.48E-03 |
| 23 | GO:0005777: peroxisome | 7.67E-03 |
| 24 | GO:0009504: cell plate | 8.42E-03 |
| 25 | GO:0000785: chromatin | 9.24E-03 |
| 26 | GO:0000145: exocyst | 9.24E-03 |
| 27 | GO:0032580: Golgi cisterna membrane | 1.01E-02 |
| 28 | GO:0030529: intracellular ribonucleoprotein complex | 1.14E-02 |
| 29 | GO:0000932: P-body | 1.14E-02 |
| 30 | GO:0019005: SCF ubiquitin ligase complex | 1.38E-02 |
| 31 | GO:0031902: late endosome membrane | 1.84E-02 |
| 32 | GO:0016607: nuclear speck | 2.78E-02 |
| 33 | GO:0005834: heterotrimeric G-protein complex | 2.84E-02 |
| 34 | GO:0005730: nucleolus | 3.05E-02 |
| 35 | GO:0005654: nucleoplasm | 3.57E-02 |